BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44920.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913657 jgi|Araly1|913657|Al_scaffold_0001_3911 1188 0.0
> Ahg913657 jgi|Araly1|913657|Al_scaffold_0001_3911
Length=780
Score = 1188 bits (643), Expect = 0.0
Identities = 735/780 (94%), Gaps = 3/780 (0%)
Strand=Plus/Plus
Query 12 ATGAGAATGTTAGTTCTTCGCACTCCCACCGGACCTGTCTCCGCCGTCAGATTCATCACC 71
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGAGAATGTTAGTTCTTCGCACTCCCACCGGACCTGTCTCCGCCGTCAAATTCATCACC 60
Query 72 AAATCCAAACCTTCTCCTTTCTCTTCTCCCGATTCATGGCTCCTCCCTGCACCAAACACT 131
||||||||||||||| |||||||| |||||||||||||||| |||| || |||||||||
Sbjct 61 AAATCCAAACCTTCTGCTTTCTCTAGTCCCGATTCATGGCTCGTCCCCGCTCCAAACACT 120
Query 132 CACCGGAGTCGTCCCCGCGTCGTCCTCGCTCTCTCTAACCCCGACGGAAGCGTCAACTCA 191
| |||||| || | ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 CGCCGGAGACGGCAACGCGTCGTCCTCGCTCTCTCTAACCCCGACGGAAGCGTCAAGTCC 180
Query 192 AAACCCTCAACCTCAGCTTCTCAAATCCCTTCTTCAGGAGATGAAACAGTTTTCGTGGGT 251
|||||||||||||||| |||||||||||| |||||||||||||| |||||||||||||||
Sbjct 181 AAACCCTCAACCTCAGTTTCTCAAATCCCGTCTTCAGGAGATGACACAGTTTTCGTGGGT 240
Query 252 CAAGATAATGTTCCTCTCGAGGGCGTGATTCAATTCGATAAA-C--CGTCATCTACTTCA 308
||||| ||||||||||||||||| |||||||| ||||||||| | | ||||||||||||
Sbjct 241 CAAGAGAATGTTCCTCTCGAGGGTGTGATTCAGTTCGATAAACCATCATCATCTACTTCA 300
Query 309 TCTTCTAACATTACCAAATGGGGTCGTGTGGCTTTACTTGCGGGTGGTGATGTTTTAGCT 368
||||||||||||||||||||||||||||| || |||||||| |||||||||||||| |||
Sbjct 301 TCTTCTAACATTACCAAATGGGGTCGTGTTGCGTTACTTGCTGGTGGTGATGTTTTGGCT 360
Query 369 CTGCTTATCTTCTCTGCCATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTCTTGAT 428
||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 361 CTGCTTATCTTCTCTGCAATTGGGAGATTTAGCCATGGTTTCCCTGTTTTTTCTATTGAT 420
Query 429 ACTCTCCACACAGCTGACCCTTTCATTGCGGGATGGTTTCTGAGTGCTTATTTCTTGGGG 488
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 ACTCTCCACACAGCTGACCCTTTCATTGCGGGATGGTTTCTGAGTGCATATTTCTTGGGG 480
Query 489 GGTTATGCGGAGGAAGGACGAGGAATGAAGGGAAAGTCTAAAGCTGTGGTTGCAGCTGCG 548
||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 481 GGTTATGCGGAGGAAGGGCGAGGAATGAAGGGTCGGTCTAAAGCTGTGGTTGCAGCTGCC 540
Query 549 AAATCTTGGATTGTCGGAACTCCGCTTGGAATTATCATTAGGTCAGCTTCATCAGGTCAC 608
|||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||
Sbjct 541 AAATCTTGGATTGTCGGAGCTCCGCTTGGAATTATCATTAGATCAGCTTCATCGGGTCAC 600
Query 609 ATTCCGGCATATAGCTTTGTGTTGGTGACAATGGGAAGTACTGCTGTTTTACTTATAGGA 668
|||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 601 ATTCCGGCTTCTAGCTTTGTGTTGGTGACAATGGGAAGTACTGCTGTTTTACTTATCGGA 660
Query 669 TGGAGAGCATTGTTATTCAGTGTGCTTCCTACAGAGTCCAAGAAGAAAGATGATACGTAT 728
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 661 TGGAGAGCATTGTTATTCAGTGTGCTTCCAACAGAGTCCAAGAAGAAAGATGATACGTAT 720
Query 729 CGGAAGGGTAGTGCATTCGAGCTATTTGAGTTGCTTACTTCATTGATAAGACGATGGTGA 788
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 721 CGGAAGGGCAGTGCATTCGAGCTATTTGAGTTGCTTACTTCATTGATAAGACGGTGGTGA 780
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5