BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44960.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473830 jgi|Araly1|473830|fgenesh2_kg.1__3784__AT1G44960.1 1517 0.0
> Ahg473830 jgi|Araly1|473830|fgenesh2_kg.1__3784__AT1G44960.1
Length=990
Score = 1517 bits (821), Expect = 0.0
Identities = 917/963 (95%), Gaps = 7/963 (1%)
Strand=Plus/Plus
Query 13 TTCTCTTCTCATCTCAGAGCTCCGTGATGAAGAAATGGTTAGCAATCGCAGCGACGGTGG 72
||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TTCTCTTCTGATCTCAAAGCTCCGTGATGAAGAAATGGTTAGCAATCGCCGCGACGGTGG 60
Query 73 CGATAATTGCAATAATCGTTAGACAAGGCACGACACAATACGGATGGAACAAAGAGGCGG 132
||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| |||
Sbjct 61 CGATAATTGCAATAATCGTGAGACAAGGCACGACTCAATACGGTTGGAACAAAGAGTCGG 120
Query 133 CGTTGGAAAAGCTAAAGGAATGGTCAGATCGGCTGGGGATTTGGGCGATTCCAACGTATG 192
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 121 CGTTGGAAAAGCTAAAGGAATGGTCAGATCGGCTCGGGATTTGGGCGATTCCGACGTATG 180
Query 193 TAGCGGTTCACACAATAACCTTAGCTCTTTGTCTCCCTCACGCCGTCTTCTTTGAAGCTG 252
||||||| ||||| |||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 181 TAGCGGTACACACCGTAACATTAGCTCTTTGTCTCCCTCACGCCGTCTTTTTTGAAGCTG 240
Query 253 GTGCTTCTATGCTCTTTGGTTTCCTTCCTGCTCTTCTCTGTGTTTTCTCTGCTAAAGTTC 312
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 241 GTGCTTCTATACTCTTTGGTTTCCTTCCTGCTCTTCTCTGTGTTTTCTCCGCTAAAGTTC 300
Query 313 TCGCCGCTTCTTTCTCCTTCTGGATCGGCAGGTTTGTTTTTAAGAGTTCCACCAGAGCTA 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TCGCCGCTTCTTTCTCCTTCTGGATCGGCAGGTTTGTTTTTAAGAGTTCCACCAGAGCTA 360
Query 373 CAGGGTGGGCGCATAGCAACAAGTACTTCAATATTCTCTCAAGAGGAGTTGAGCGCGATG 432
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 361 CAGGGTGGGCGCATAGAAACAAATACTTCAATATTCTCTCAAGAGGAGTTGAGCGAGATG 420
Query 433 GTTGGAAGTTTGTTCTTCTTGCAAGGTTCTCGCCCATTCCTTCCTATGTCATAAACTACG 492
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GTTGGAAGTTTGTTCTTCTAGCAAGGTTCTCGCCCATTCCTTCCTATGTCATAAACTACG 480
Query 493 CTTTGGCAGCTACTGAAGTCCGGTTTGTAGCTGATTTTCTGTTCCCCACGGTTATTGGCT 552
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CTTTGGCAGCCACAGAAGTCCGGTTTGTAGCTGATTTTCTGTTCCCCACGGTTATTGGCT 540
Query 553 GCCTCCCGATGATCCTGCAGAACGCATCAGTCGGTAGCCTCGCTGGTATGGCTGTGGCTT 612
|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 541 GCCTCCCGATGATCTTGCAGAACGCATCAGTCGGAAGCCTTGCTGGTATGGCTGTGGCTT 600
Query 613 CAGTAGCTGGAAAACAGAAAAGTCAGGTCTGGGGTTATGTTTTCCCAGTACTTGGGATAC 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CAGTAGCTGGAAAACAGAAAAGTCAGGTCTGGGGTTATGTTTTCCCAGTACTTGGGATAC 660
Query 673 TGTCAAGTGTTCTGATTTCATTGAGGATCAAAAAGTACTCAGCTGGAATTACAGAGGCAT 732
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 661 TGTCAAGTGTTCTGATTTCGTTGAGGATCAAAAAGTACTCAGCTGGAATTACAGAGACAT 720
Query 733 CATCAGATACCTCTGCTAACAACTCTAGTTTAGCTTCATC-T--GAAAC-TGCGAATCCC 788
||||||| ||||||||||||| |||||||||||||||||| | ||||| | ||||||||
Sbjct 721 CATCAGAGACCTCTGCTAACAGCTCTAGTTTAGCTTCATCATCTGAAACCT-CGAATCCC 779
Query 789 GCTTATGGAACCGATGGATCCAAGAAAAGTGAGTGATTATACAAACCATGATGGTGGTTT 848
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 ACTTATGGAACCGATGGATCCAAGAAAAGTGAGTGATGATACAAACCATGATGGTGGTTT 839
Query 849 TTGATCGCCGGTATTACACTTTGTTTGGTTTGCAGCTATCAGATTCTCAACATCATGGCT 908
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TTGATCGCTGGCAATACACTTTGTTTGGTTTGCAGCTATCAGATTCTCAACATCATGGCT 899
Query 909 TATTTTGGACGAGTTAGGCAGTATCTTAATAGTAACA-AAGCATTAGTTTTTGTACTTCT 967
|||||||||||| ||||||||| |||||| ||||||| || ||||||||||||| ||||
Sbjct 900 TATTTTGGACGAATTAGGCAGTCTCTTAAAAGTAACAGAAT-ATTAGTTTTTGTAGTTCT 958
Query 968 TAA 970
|||
Sbjct 959 TAA 961
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5