BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G44970.1
Length=1286
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922939 jgi|Araly1|922939|scaffold_104220.1 1698 0.0
> Ahg922939 jgi|Araly1|922939|scaffold_104220.1
Length=1083
Score = 1698 bits (919), Expect = 0.0
Identities = 1021/1071 (95%), Gaps = 3/1071 (0%)
Strand=Plus/Plus
Query 104 ACTCCCAAGTAACAAAAATGGCTATCTCAAAGCTTATTCCTACTCTTGTGCTCTTTGTTT 163
|||| ||||| | ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 6 ACTCTCAAGTTATGAAAATGGCTATCTCAAAGCTTATTCCTACTCTTGTGCTCTTTGCTT 65
Query 164 TGTTCTCTTTTGATGTTAGTGTTGCTCATCCAGGTCTAGGATTTGGATGGGGAAGTAATA 223
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 66 TGTTCTCTTTTGATGTTGGTGTTGCTCATCCAGGTCTAGGATTTGGATGGGGAAGTAATA 125
Query 224 GTCCCATTGGAGGATCTTTTTAC-TCAAATCTTTACCCACAATTTTACCAGTTCTCTTGT 282
|||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||
Sbjct 126 ATCCCATTGGAGGATCTTTTT-CTTCAAATCTTTACCCACAGTTTTACCAGTTCTCTTGC 184
Query 283 CCACAAGCTGATGAGATTGTTATGACGGTGCTCGAAAAAGCCATAGCTAAAGAACCAAGA 342
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 185 CCACAAGCTGATGAGATTGTCATGACGGTGCTCGAAAAAGCCATAGCTAAAGAACCAAGA 244
Query 343 ATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGGGCTGTGATGCA 402
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 245 ATGGCAGCATCTTTACTCAGGCTTCACTTCCACGACTGCTTCGTTCAGGGCTGTGATGCA 304
Query 403 TCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAAAAGAATGCTGGACCAAACAAG 462
||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 305 TCAATCTTGTTGGATGATAGTGCTACAATAAGAAGTGAAAAGAATGCGGGACCAAACAAG 364
Query 463 AACTCCGTTAGAGGGTTTCAAGTAATCGACGAGATCAAAGCCAAACTTGAGCAAGCTTGT 522
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 AACTCTATTAGAGGGTTTCAAGTAATCGACGAGATCAAAGCCAAACTTGAGCAAGCTTGC 424
Query 523 CCTCAAACTGTCTCCTGCGCCGACATTCTAGCTCTAGCTGCTCGTGGCTCAACTATACTG 582
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 425 CCTCAAACTGTCTCCTGCGCCGACATTCTAGCTCTTGCTGCTCGTGGCTCAACTATACTG 484
Query 583 AGTGGTGGACCATCATGGGAGCTTCCACTAGGGAGGAGAGACTCGAGGACCGCTAGCCTT 642
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 485 AGCGGTGGACCATCATGGGAGCTTCCACTAGGGAGGAGAGACTCGAGGACAGCGAGCCTT 544
Query 643 AATGGCGCAAACACGAACATTCCTGCACCTAACTCAACTATTCAAAATCTCTTAACCATG 702
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||
Sbjct 545 AATGGCGCAAACACGAACATTCCTGCACCTAACTCCACTATTCAGAATCTCTTAACCTTG 604
Query 703 TTCCAACGTAAAGGTTTGAACGAAGAAGACCTTGTTTCCCTATCAGGAGGACATACGATT 762
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 605 TTCCAACGCCAAGGTTTGAACGAAGAAGACCTTGTTTCCCTATCAGGGGGACATACGATT 664
Query 763 GGAGTAGCGAGGTGCACAACGTTTAAACAAAGACTATACAATCAAAACGGTAATAACCAA 822
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 665 GGAGTAGCGAGGTGCACAACGTTTAAACAAAGGCTATACAATCAAAACGGTAACAACCAA 724
Query 823 CCAGACGAGACGCTAGAGAGGTCTTACTACTATGGTCTCAGGTCAATTTGTCCACCAACA 882
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 725 CCAGACGAGACGCTAGAGAGGTCTTACTACTATGGTCTCAGGTCGATTTGTCCACCAACG 784
Query 883 GGCGGTGACAACAATATTTCACCTCTAGACTTAGCCTCTCCTGCAAGATTCGACAACACA 942
|||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 785 GGCGGTGACAACAACATTTCACCTCTAGACTTAGCCTCTCCTTCTCGATTCGACAACACA 844
Query 943 TACTTCAAGCTCCTTCTATGGGGCAAAGGCTTATTGACATCAGATGAAGTGCTTCTCACT 1002
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 845 TACTTCAAGCTCCTTCTATGGGGAAAAGGCTTATTGACTTCAGATGAAGTGCTTCTCACT 904
Query 1003 GGCAATGTAGGCAAGACTGGTGCATTAGTGAAAGCTTATGCCGAAGACGAGAGACTTTTC 1062
||||| ||||||| |||||||||| ||||||||||||| || ||||||||||||||||||
Sbjct 905 GGCAACGTAGGCAGGACTGGTGCACTAGTGAAAGCTTACGCAGAAGACGAGAGACTTTTC 964
Query 1063 TTCCAACAATTCGCAAAGTCGATGGTTAACATGGGAAACATTCAGCCTCTTACTGGTTTT 1122
||||| ||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 965 TTCCACCAATTTGCGAAGTCGATGGTAAACATGGGGAACATTCAGCCTCTTACTGGTTTT 1024
Query 1123 AATGGTGAGATCAGGAAGAGTTGTCATGTGATTAACTAAA-GAAACTGTGT 1172
|||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1025 AATGGTGAGATCAGGAAGAGTTGTCATGTGATTAACTAAAAGAAACTGTGT 1075
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48072998337
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5