BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45010.1
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473834 jgi|Araly1|473834|fgenesh2_kg.1__3788__AT1G45010.1 1123 0.0
> Ahg473834 jgi|Araly1|473834|fgenesh2_kg.1__3788__AT1G45010.1
Length=702
Score = 1123 bits (608), Expect = 0.0
Identities = 670/701 (96%), Gaps = 0/701 (0%)
Strand=Plus/Plus
Query 90 ATCATATGGAGGAAGAACAAGTAAGAGCAATTAAGATAATAGTATTTGGAGTCATCTCAT 149
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATCATATGGAGGAAGAACAAGTAAGAGCAATTAAGATAATAGTATTTGGAGTAATCTCAT 60
Query 150 GGGGTGTGGCCTTCATTCTCACCCGGAGAATCTTCTCAAGCTACTCATTCAGCTTCAGCA 209
||||| | |||||||||||||| |||| ||||||||| ||||||||||||||||||||||
Sbjct 61 GGGGTCTTGCCTTCATTCTCACTCGGAAAATCTTCTCTAGCTACTCATTCAGCTTCAGCA 120
Query 210 ACCGTCTTCTCTCCACGGCTCACGCGACTATCGCTGTCACTTTAGCAACACTCTCTGTTC 269
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 121 ACCGTCTTCTTTCCACGGCTCACGCGACAATCGCTGTCACTTTAGCAACACTCTCTGTTC 180
Query 270 AAGATTTGTCTTGCCCTGTTTGTCCCCTTGCTTCTAAGCCATCTCATAAACAGATGGACG 329
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 181 AAGATTTGTCTTGCCCTGTTTGTCCCCTTGCTTCTAAGCCATCTCCTAAACAGATGGACG 240
Query 330 TGATGGCGTTTTCGTTGTCGTACATGATCTACGATCTAATATGTTGTCATTTCGATCAAG 389
|||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||
Sbjct 241 TGATGGCGTTTTCGTTATCGTACATGATCTACGATCTTATATGTTGTCATTTCGATAAAG 300
Query 390 TGTTTAGCATTGATAACGCGGTTCATCATTTCGTTAGCATTCTTGGTTTTATAGCTGGAC 449
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TGTTTAGCATTGATAATGCGGTTCATCATTTTGTTAGCATTCTTGGTTTTATAGCTGGAC 360
Query 450 TTGCATACCAAAAGTCTGGATCTGAGATCGTGGCTACACTGTGGGTAGCAGAGATATCAA 509
|||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
Sbjct 361 TTGCTTACCAAAAGTCTGGATCTGAGATTGTGGCTACACTGTGGGTAGCAGAAATATCGA 420
Query 510 GTCCTTTTTTCCACCTTAGGGAGATTCTCAAAGAGATTGGATACAAAGACACCAAACTCA 569
||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 421 GTCCTTTCTTCCACCTTAGGGAGATTCTCAAAGAGATTGGATACAAAGACACTAGCCTCA 480
Query 570 ATCTAGCTGCCGATGTGTGTTTTGCCACTATATTCACATTGGCGAGAATTGTGTGTGGAC 629
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 481 ATCTAGCCGCTGATGTGTGTTTTGCCACTATATTCACATTGGCGAGGATTGTGTGTGGAC 540
Query 630 CTTTCCTCGTTTACGTCAGTCTATCAGCTGATAATCCCATCTTCATCAAGGCAATGGGAT 689
|||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 CTTTTCTTGTTTACGTCAGTCTATCAACTGATAATCCCATCTTCATCAAGGCAATGGGAT 600
Query 690 CAGGATTACAACTCGTGAGCATCTTTTGGTTCTATAAAATTTTCGGGATGATGAGATATA 749
|||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct 601 CAGGATTACAACTCGTGAGCATATTTTGGTTCTATAAAATCTTCGGAATGATGAGATATA 660
Query 750 AACTTTTTAAGAAGCCAAAGTCAAACAAAAAGTCTACTTAG 790
|||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AACTTTTTAAGAAGCCAAAGTCAAACAAAAAGTCTACTTAG 701
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33471921126
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5