BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45110.1
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
Ahg336805 jgi|Araly1|336805|fgenesh1_pg.C_scaffold_1003370 1585 0.0
Ahg336806 jgi|Araly1|336806|fgenesh1_pg.C_scaffold_1003371 475 3e-133
> Ahg336805 jgi|Araly1|336805|fgenesh1_pg.C_scaffold_1003370
Length=1029
Score = 1585 bits (858), Expect = 0.0
Identities = 971/1025 (95%), Gaps = 9/1025 (1%)
Strand=Plus/Plus
Query 39 ATGGCGAGAGTTTGTCTTCCTTGT-TCTT--TCC-TTCGTACCTCTACTCTCTCGATTCT 94
||||||||| |||||||||||||| | || ||| ||||| | ||| |||| ||||||||
Sbjct 1 ATGGCGAGACTTTGTCTTCCTTGTGT-TTCCTCCATTCGTGCTTCTTCTCTTTCGATTCT 59
Query 95 CTTCCGTTCACCGATTCTCTCCACAACCGCCGCAATTTCATTTTGCTCGTCGTCGGAGTT 154
||||||||| ||||||||||||| |||| ||| |||||||||||| ||||||||||| ||
Sbjct 60 CTTCCGTTCTCCGATTCTCTCCAGAACCACCGGAATTTCATTTTGTTCGTCGTCGGAATT 119
Query 155 CGCCGACTCTGTAG-CCAAG-GATGATTCAAAACGCGGTCCTCTCAAGCCTGGGCTTTAC 212
|||||||||||| | || || |||||||||||||||||||||||||||||||| ||||||
Sbjct 120 CGCCGACTCTGT-GACC-AGAGATGATTCAAAACGCGGTCCTCTCAAGCCTGGTCTTTAC 177
Query 213 CTCGTCGGAACTCCAATCGGAAACCTCGAAGATATCACTTTACGTGCGATTCGTGTATTG 272
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 178 CTCGTCGGAACTCCAATCGGAAATCTCGAAGATATCACTTTACGTGCGATTCGTGTATTG 237
Query 273 AGATCTGCGGATGTGATACTCTCTGAGGATACAAGACACTCTGGGAAGTTGCTACAGTAT 332
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 238 AGATCTGCGGATGTGATACTCTCTGAGGACACGAGACACTCTGGGAAGTTGCTACAGTAT 297
Query 333 TACAATATTAAAGCTCAGCTTCTTAGTTATCACAAGTTCAACGAGGCTCAGAGAGAACAA 392
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 298 TACAATATTAAAGCTCAGCTTCTTAGTTATCACAAGTTCAACGAGGCCCAGAGAGAGCAG 357
Query 393 GCGGTGTTGACACGGTTGAAACAAGGAGAGATTGTTGCACTTATCAGCGATGCTGGCACA 452
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 358 GCGGTGTTGACACGGTTGAAACAAGGAGAGATTGTAGCGCTTATCAGCGATGCGGGCACA 417
Query 453 CCGGGAATTAGTGATCCCGGTACTCAACTTGCTAAAATGTGTGCGAAAGAAAATATAGAT 512
|| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 CCCGGAATTAGTGATCCTGGTACTCAACTTGCTAAAATGTGTGCGAAAGAAAATATAGAT 477
Query 513 GTGATTCCAATCCCTGGGGCTTGTGCTGTAGTTGCTGCTCTTTCTGCATCTGGTTTGGAG 572
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 478 GTGATTCCAATCCCTGGGGCTTGTGCTGTAGTTGCTGCTCTTTCTGCCTCTGGTTTGGAT 537
Query 573 ACAGATGAGTTCACATTCGTTGGATTTCTTCCTAAGCATTCTGGAACAAGGAAGGAGAGG 632
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 538 ACAGATGAGTTCACATTCGTTGGATTTCTTCCTAAGCATTCTGGAACGAGGAAGGAGAGG 597
Query 633 CTGATTGTTTCATCAAATGAGACAAGAACACAGATCTTTTATGTTCCCCCTCATAAGTTG 692
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 598 CTGATTGTTTCATCAAATGAGACAAGAACACAGATCTTTTATGTTCCCCCTCATAAATTG 657
Query 693 TCACAGTTTCTTGAAGAAACAACCCCTTACTTTGGTGAATCAAGGCAATGTGTAATAGCT 752
|||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 658 TCACAGTTTCTTGAAGAAACCTCTCCTTACTTTGGTGAATCAAGGCAATGTGTAATAGCT 717
Query 753 CGAGAGATTACAAAGCTGCATGAAGAGTTTTGGAGGGGTTCGATAGCGGAAGCCAAGCAA 812
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 718 CGAGAGATTACAAAGCTGCATGAAGAGTTTTGGAGGGGTTCGATAGGGGAAGCCAAGGAA 777
Query 813 GAGTTTCTGATCCGCCAACCAAAAGGAGAAATCACGCTTTTGATAGAAGGAAAGGAAGAA 872
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 778 GAGTTTCTGATCCGCCAACCAAAAGGAGAAATCACGCTTTTGATTGAAGGAAAGGAAGAA 837
Query 873 ACCAAAGCTGAAAATCCAACAGAGTCTCAACTTGAAGAAGAGTTGAGAGGCCTGATCTCT 932
|||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||
Sbjct 838 ACCAAAGCTGAAAATCCAACGGAGTCTCAACTTGAAGAAGAGTTAAGAGGGCTGATCTCT 897
Query 933 GATGGGCATAGCCTTTCCACGGCGGTGAAAACGGTTGCAGAAAGAACATCAATGAGAAAG 992
||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 898 GATGGACATAGCCTTTCCACGGCGGTGAAAACGGTGGCGGAGAGAACATCAATGAGAAAG 957
Query 993 AAAGAAGTATATTCTCTGGCATTGAAGAAATTCGGGAAGCAGATTCGGGTAGAAGAAGAA 1052
||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 958 AAAGAGGTATATTCGCTGGCATTGAAGAAATTCGGGAAGCAGATTCAGGTAGAAGATGAA 1017
Query 1053 GATGA 1057
| |||
Sbjct 1018 GCTGA 1022
> Ahg336806 jgi|Araly1|336806|fgenesh1_pg.C_scaffold_1003371
Length=396
Score = 475 bits (257), Expect = 3e-133
Identities = 298/318 (94%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 737 GCAATGTGTAATAGCTCGAGAGATTACAAAGCTGCATGAAGAGTTTTGGAGGGGTTCGAT 796
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 69 GCAATGTGTAATAGCTCGAGAGATTACAAAGCTGCATGAAGAGTTTTGGAGAGGTTATAT 128
Query 797 AGCGGAAGCCAAGCAAGAGTTTCTGATCCGCCAACCAAAAGGAGAAATCACGCTTTTGAT 856
|| |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 129 AGGGGAAGCCAAGCAAGAGTTTCTGATTCGCCAACCAAAAGGAGAAGTCACGCTTTTGAT 188
Query 857 AGAAGGAAAGGAAGAAACCAAAGCTGAAAATCCAACAGAGTCTCAACTTGAAGAAGAGTT 916
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 189 TGAAGGAAAGGAAGAAACCAAAGCTGAAAATCCAACGGAGTCTCAACTTGAAGAAGAGTT 248
Query 917 GAGAGGCCTGATCTCTGATGGGCATAGCCTTTCCACGGCGGTGAAAACGGTTGCAGAAAG 976
||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 249 AAGAGGGCTGATCTCTGATGGACATAGCCTTTCCACGGCGGTGAAAACGGTGGCGGAAAG 308
Query 977 AACATCAATGAGAAAGAAAGAAGTATATTCTC-TGGCATTGAAGAAATTCGGGAAGCAGA 1035
||||||||||||||||||||| ||||||| | |||||||||||||||||| ||||||||
Sbjct 309 AACATCAATGAGAAAGAAAGAGGTATATT-TGATGGCATTGAAGAAATTCGCGAAGCAGA 367
Query 1036 TTCGGGTAGAAGAAGAAG 1053
||| ||||||||| ||||
Sbjct 368 TTCAGGTAGAAGATGAAG 385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49216685847
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5