BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45130.1
Length=2546
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473836 jgi|Araly1|473836|fgenesh2_kg.1__3790__AT1G45130.1 3901 0.0
Ahg492198 jgi|Araly1|492198|fgenesh2_kg.7__1631__AT4G26140.1 444 2e-123
> Ahg473836 jgi|Araly1|473836|fgenesh2_kg.1__3790__AT1G45130.1
Length=2448
Score = 3901 bits (2112), Expect = 0.0
Identities = 2331/2436 (96%), Gaps = 18/2436 (1%)
Strand=Plus/Plus
Query 76 AGACCAACGTCACTTATTTACACACTCTGttttcttttttttggttgcttcttctctgat 135
||||||||| |||||||||||||| |||| || |||||||| || ||||||||| ||
Sbjct 28 AGACCAACGACACTTATTTACACAATCTG--TT-TTTTTTTT--TT-CTTCTTCTCAAAT 81
Query 136 ctttctttctttttttttttttGAAAGAATCAATTTCCCTCTCAAATCAGAAATCTAAAA 195
||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 82 CTTTCTTTC--ATTTTTTTTTTGAAAGATTCAATTTCCCTCTCATATCAGAAATCTAAAA 139
Query 196 ATGGGAACAACGATCTTGGTTCTCTCCAAGATCCTAACTTTCTTACTAACAACAATGCTG 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 ATGGGAACAACGATCTTGGTTCTCTCCAAGATCCTAACTTTCTTACTAACAACAATGCTG 199
Query 256 ATTGGATCCAGTGTGATCCAGTGTAGTAGTGTAACCTACGATAAGAAAGCTATCGTCATC 315
||||||||||| ||||||||||||||||||| || ||||| ||||||||||||||||||
Sbjct 200 ATTGGATCCAGCATGATCCAGTGTAGTAGTGTGACTTACGACAAGAAAGCTATCGTCATC 259
Query 316 AATGGCCACCGTAGAATCCTCCTCTCTGGTTCTATTCACTACCCAAGAAGCACTCCTGAG 375
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 260 AATGGCCACCGTAGAATCCTCCTCTCCGGTTCTATTCATTACCCAAGAAGCACTCCTGAG 319
Query 376 ATGTGGGAAGATCTTATAAAGAAAGCTAAAGACGGTGGCTTGGATGTTATTGATACTTAT 435
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 320 ATGTGGGAAGATCTTATAAAGAAAGCTAAAGATGGAGGCTTGGATGTTATTGATACTTAT 379
Query 436 GTTTTCTGGAATGGTCATGAACCTTCTCCTGGAACTTACAATTTCGAAGGAAGATATGAT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 GTTTTCTGGAATGGTCATGAACCTTCTCCTGGAACTTACAATTTCGAAGGAAGATATGAT 439
Query 496 TTGGTAAGATTCATTAAGACGATTCAGGAAGTGGGTCTTTATGTTCATCTCAGAATTGGT 555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 TTGGTAAGATTCATTAAGACGATTCAGGAAGTGGGTCTTTATGTTCATCTCAGAATTGGT 499
Query 556 CCTTATGTTTGTGCAGAATGGAATTTTGGAGGGTTTCCTGTGTGGTTGAAGTATGTAGAT 615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CCTTATGTTTGTGCAGAATGGAATTTTGGAGGGTTTCCTGTGTGGTTGAAGTATGTAGAT 559
Query 616 GGGATTAGTTTCAGAACTGACAATGGACCCTTCAAGTCTGCAATGCAAGGATTCACAGAG 675
||||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||||
Sbjct 560 GGGATTAGTTTCAGAACTGACAATGGACCATTCAAGGCTGCAATGCAAGGTTTCACAGAG 619
Query 676 AAGATTGTTCAGATGATGAAAGAACATAGATTCTTTGCGTCACAAGGTGGACCTATCATT 735
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 620 AAGATTGTTCAGATGATGAAGGAACATAGATTCTTTGCGTCACAAGGTGGACCCATTATT 679
Query 736 CTT-TCTCAGATTGAGAATGAGTTTGAACCAGATCTTAAAGGGCTTGGACCGGCTGGTCA 794
|| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 680 -TTGTCTCAGATTGAGAATGAGTTTGAACCAGAGCTTAAAGGGCTTGGACCAGCTGGTCA 738
Query 795 CTCGTATGTCAATTGGGCTGCGAAAATGGCGGTCGGTTTAAACACGGGAGTACCGTGGGT 854
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 739 CTCGTATGTCAATTGGGCTGCGAAAATGGCGGTCGGTTTAAATACTGGAGTACCGTGGGT 798
Query 855 GATGTGCAAGGAAGATGATGCACCTGACCCAATTATAAACACTTGCAACGGATTCTACTG 914
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 799 GATGTGCAAGGAAGATGATGCACCTGACCCAATTATAAATTCTTGCAACGGATTTTACTG 858
Query 915 TGATTATTTTACTCCAAATAAACCGTATAAGCCAACTATGTGGACAGAGGCATGGAGTGG 974
|||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 859 CGATTATTTTACTCCTAATAAACCATATAAGCCAACTATGTGGACAGAGGCATGGAGTGG 918
Query 975 CTGGTTCACAGAGTTTGGTGGAACTGTTCCTAAACGACCTGTAGAGGATCTAGCATTTGG 1034
|||||||||||||||||||||||| |||| |||||||| || ||||||||||| |||||
Sbjct 919 CTGGTTCACAGAGTTTGGTGGAACCATTCCAAAACGACCAGTTGAGGATCTAGCTTTTGG 978
Query 1035 AGTAGCTCGTTTCATTCAAAAGGGCGGTTCGTATATAAACTACTACATGTACCATGGAGG 1094
|||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 979 AGTAGCCCGTTTCATTCAAAAGGGTGGATCGTATATAAACTACTACATGTACCATGGAGG 1038
Query 1095 AACAAACTTTGGACGCACCGCAGGAGGTCCATTTATCACCACTAGTTATGACTATGATGC 1154
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 AACAAACTTTGGACGCACAGCAGGAGGTCCATTTATCACCACTAGTTATGACTATGATGC 1098
Query 1155 TCCTATCGATGAATACGGGTTGGTCCAAGAGCCCAAGTACAGTCATCTTAAGCAGCTTCA 1214
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 TCCCATCGATGAATACGGGTTGGTCCAAGAGCCCAAGTACAGTCATCTTAAGCAGCTTCA 1158
Query 1215 TCAGGCAATCAAGCAATGTGAAGCTGCCTTAGTTTCTTCTGATCCACATGTTACTAAACT 1274
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1159 TCAGGCAATTAAGCAATGTGAAGCTGCCTTAGTTTCTTCTGATCCACATGTTACTAAACT 1218
Query 1275 AGGAAACTACGAGGAGGCTCATGTGTTCACTGCTGGCAAAGGAAGTTGTGTAGCTTTCTT 1334
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1219 AGGAAACTACGAGGAGGCTCATGTGTTCACTGCCGGCAAAGGAAGTTGTGTAGCTTTCCT 1278
Query 1335 AACGAACTATCACATGAATGCACCTGCAAAAGTAGTGTTCAATAACCGACACTATACTCT 1394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1279 AACGAACTATCACATGAATGCACCTGCAAAAGTAGTGTTCAATAACCGACACTATACTCT 1338
Query 1395 ACCTGCTTGGTCCATCAGCATTCTTCCAGATTGTAGAAACGTTGTTTTCAACACTGCGAC 1454
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1339 ACCTGCTTGGTCCATCAGCATTCTTCCAGATTGTAGAAATGTTGTTTTCAACACTGCGAC 1398
Query 1455 GGTTGCTGCAAAGACATCACATGTGCAAATGGTGCCATCTGGTTCCATATTGTACTCGGT 1514
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1399 GGTTGCTGCAAAGACATCACATGTGCAAATGATGCCATCTGGTTCCATATTGTACTCGGT 1458
Query 1515 TGCTAGATACGATGAAGATATTGCTACTTATGGAAACCGTGGGACAATCACAGCTCGTGG 1574
||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 1459 TGCTAGATATGATGAAGATATTGCTACTTATGGAGACCGTGGGACAATCACAGCCCGTGG 1518
Query 1575 ATTGTTGGAGCAGGTTAATGTTACACGAGATACAACTGATTACCTGTGGTACACAACCAG 1634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1519 ATTGTTGGAGCAGGTTAATGTTACACGAGATACAACTGATTACCTGTGGTACACAACCAG 1578
Query 1635 TGTGGATATTAAGGCATCAGAATCATTCTTGCGTGGAGGAAAATGGCCAACTCTTACAGT 1694
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1579 TGTGGATATTAAGGCGTCAGAATCATTCTTGCGTGGAGGAAAATGGCCGACTCTTATGGT 1638
Query 1695 GGATTCTGCAGGGCATGCTGTTCATGTGTTTGTCAATGGACATTTTTACGGATCTGCCTT 1754
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1639 GGATTCTGCAGGGCATGCTGTTCATGTGTTTGTCAATGGACATTTTTACGGATCCGCCTT 1698
Query 1755 TGGAACAAGAGAAAACAGAAAGTTTTCATTTAGCTCCCAAGTCAATCTACGAGGTGGAGC 1814
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1699 TGGGACAAGAGAAAACAGAAAGTTTTCATTTAGCTCCCAAGTCAATCTACGAGGTGGAGC 1758
Query 1815 TAACAAAATCGCACTACTGAGTGTAGCAGTTGGGTTGCCGAATGTTGGACCACATTTTGA 1874
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1759 TAACAGAATCGCACTACTGAGCGTAGCAGTTGGGTTGCCGAATGTTGGACCACATTTTGA 1818
Query 1875 GACGTGGGCCACAGGAATCGTCGGGTCTGTGGTGCTTCATGGCCTTGACGAGGGTAACAA 1934
||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 1819 GACATGGGCCACAGGAATCGTCGGGTCTGTGGTGCTTCACGGCCTTGGCGAAGGTAACAA 1878
Query 1935 AGACTTGAGTTGGCAGAAATGGACTTATCAGGCTGGTCTGCGAGGGGAATCAATGAACTT 1994
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1879 AGACTTGAGTTGGCAGAAATGGACATATCAGGCTGGTCTGCGAGGGGAAGCAATGAACTT 1938
Query 1995 GGTCTCTCCTACTGAGGACTCCTCTGTTGATTGGATCAAAGGCTCATTGGCTAAGCAAAA 2054
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1939 GGTCTCTCCTACTGAAGATTCCTCTGTTGATTGGATCAAAGGCTCATTGGCTAAGCAAAA 1998
Query 2055 CAAACAACCTTTGACATGGTACAAGGCCTATTTTGACGCGCCTAGAGGGAACGAGCCGCT 2114
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1999 CAAACAACCTTTGACATGGTACAAGGCCTACTTTGACGCGCCTAGAGGGAACGAGCCGCT 2058
Query 2115 GGCTTTGGATCTAAAGAGTATGGGGAAAGGGCAAGCTTGGATAAACGGGCAAAGCATAGG 2174
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2059 GGCTTTGGATCTAAATAGTATGGGGAAAGGGCAAGCTTGGATAAACGGGCAAAGCGTAGG 2118
Query 2175 GAGATACTGGATGGCATTTGCCAAAGGAGACTGCGGAAGTTGTAACTACGCTGGAACATA 2234
|| || ||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 2119 AAGGTATTGGATGGCATTTGCCAAAGGAAACTGCGGAAGTTGTAACTACGCTGGAACTTA 2178
Query 2235 CAGGCAGAACAAATGCCAGTCTGGTTGTGGCGAGCCGACACAAAGATGGTATCATGTTCC 2294
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 CAGGCAAAACAAATGCCAATCTGGTTGTGGCGAGCCGACACAAAGATGGTATCATGTTCC 2238
Query 2295 GCGTTCGTGGTTGAAGCCAAAAGGGAACTTGTTAGTACTTTTTGAAGAACTTGGTGGAGA 2354
|||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||
Sbjct 2239 GCGTTCGTGGTTGAAGCCAAGAGGAAACTTGTTAGTACTCTTTGAAGAACTTGGTGGCGA 2298
Query 2355 TATATCCAAAGTCTCTGTTGTGAAGAGATCAGTAAACTAACTTAAAAAATAAAACCAATA 2414
|||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||
Sbjct 2299 TATATCCAAAGTCTCTGTTGTGAAGAGATCAGTAAACTAACT-AAAAAA-ACT-C-AATA 2354
Query 2415 TTGTGTGTGCATTACACTAAA-AGCATTACTCGTGCTGTGTTTAATTTATCCCTCTTTGT 2473
||||||||||||||||| ||| ||||||||||||||||||||||| |||| | |||||||
Sbjct 2355 TTGTGTGTGCATTACAC-AAATAGCATTACTCGTGCTGTGTTTAAATTATTCTTCTTTGT 2413
Query 2474 GAA-CAGAAACCATATTTGAAACTCGAGATAGTTAT 2508
|| ||||||||| ||||||||||||||||||||||
Sbjct 2414 -AATCAGAAACCAGATTTGAAACTCGAGATAGTTAT 2448
> Ahg492198 jgi|Araly1|492198|fgenesh2_kg.7__1631__AT4G26140.1
Length=2383
Score = 444 bits (240), Expect = 2e-123
Identities = 750/989 (76%), Gaps = 63/989 (6%)
Strand=Plus/Plus
Query 301 AAAGCTATCG-TCATCAATGGCCACCGTAGAATCCTCCTCTCTGGTTCTATTCACTACCC 359
|||||| | | |||||||||| || | || ||||| |||||||| || |||||||||||
Sbjct 174 AAAGCTGT-GATCATCAATGGTCAGAGAAGGATCCTTCTCTCTGGCTCCATTCACTACCC 232
Query 360 AAGAAGCACTCCTGAGATGTGGGAAGATCTTATA-AAGAAAGCTAAAGACGGTGGCTTGG 418
||||||||| |||||||||||| || |||||| || || || ||||| || || ||||
Sbjct 233 AAGAAGCACACCTGAGATGTGGCCTGACCTTATACAA-AAGGCCAAAGATGGAGGTTTGG 291
Query 419 ATGTTATTGATACTTATGTTTTCTGGAATGGTCATGAACCTTCTCCTGGAAC-TTACAAT 477
||||||| | |||||||||||||||||||| ||||||||||||||||| || || ||
Sbjct 292 ATGTTATACAGACTTATGTTTTCTGGAATGGGCATGAACCTTCTCCTGG-ACAATATTAT 350
Query 478 TTCGAAGGA-AGATATGATTTGG-TAAGATTCATTAAGAC-GATTCAGGAAG-TGGGTCT 533
|| | |||| ||||||||||||| |||| ||||| || || | | || ||| | |||||
Sbjct 351 TTTG-AGGACAGATATGATTTGGTTAAG-TTCATCAA-ACTGGTACAACAAGCT-GGTCT 406
Query 534 TTATGTTCATCTCAGAATTGGTCCTTATGTTTGTGCAGAATGGAATTTTGGAGGGTTTCC 593
||| ||||||||||||||||||||||||||||| || |||||||| || |||||||||||
Sbjct 407 TTACGTTCATCTCAGAATTGGTCCTTATGTTTGCGCTGAATGGAACTTCGGAGGGTTTCC 466
Query 594 TGTGTGGTTGAAGTATGTA---GATG-GGATTAGTTTCAGAACTGACAATGGACCCTTCA 649
||| ||| | || ||||| ||| || | |||| || || ||||||| ||| ||||
Sbjct 467 TGTTTGGCTCAAATATGTTCCCGATATGG-T--GTTT-AGGACCGACAATGAACCTTTCA 522
Query 650 AGTCTGCAATGCAAGGATTCACAGAGAAGATTGTTCAGATGATGAAAGAACATAGATTCT 709
|| ||||||||||| |||||| ||||||||||| ||||||||||||| | | ||| |
Sbjct 523 AGGCTGCAATGCAAAAATTCACTGAGAAGATTGTGGGGATGATGAAAGAAGAAAAATTAT 582
Query 710 TTGCGTCACAAGGTGGACCTATCATTCTTTCTCAGATTGAGAATGAGTTTGAACCAGATC 769
||| | | ||||| ||||| |||||||| || ||||| |||||||||| || |||| ||
Sbjct 583 TTGAGACTCAAGGAGGACCCATCATTCTGTCACAGATAGAGAATGAGTATGGACCA-ATA 641
Query 770 TTAAAGGGCT-T-GGACCGGCTGGTCACTCGTATGTCAAT-TGGGCT-GC-GAAAATGGC 824
| ||| | ||| | | || | | || ||| |||| | || |||| ||||
Sbjct 642 G-AGTGGGAGATAGGAGCACCAGGGAAGGCATACA-CAAAATGGG-TAGCTGAAA-TGGC 697
Query 825 GGTCGGTTTAAACACGGGAGTACCGTGGGTGATGTGCAAGGAAGATGATGCACCTGACCC 884
|| | ||| || || || ||| | ||||||||| |||||||||| ||| || |
Sbjct 698 ACAAGGACTCTCCACCGGTGTCCCATGGATTATGTGCAAGCAAGATGATGCTCCTAACTC 757
Query 885 AATTATAAACACTTGCAACGGATTCTACTGTGATTATTTTACTCCAAA-TAA-ACCGTAT 942
||||| ||||| ||||| || || || ||||| |||| | ||||| | || ||
Sbjct 758 TATTATTAACACATGCAATGGGTTTTATTGTGAGAATTTCAAACCAAACTCGGACA--AT 815
Query 943 AAGCC-AACTATGTGGACAGAGG-CATGGAGTGGCTGGTTCACAGAGTTTGGTGGAACTG 1000
||||| || |||||||||||| | |||| ||| ||||||||||||||||| || | |
Sbjct 816 AAGCCGAAA-ATGTGGACAGAGAAC-TGGACTGGTTGGTTCACAGAGTTTGGAGGTGCGG 873
Query 1001 TTCC-TAAACGACCTGTAGAGGATC-TAGCATT-TGGAGTAGCTCGTTTCATTCAAAAGG 1057
| || || | |||| | || || | | || || | || ||||| ||||| || || |
Sbjct 874 TACCATACA-GACCAGCCGAAGA-CATTGCCTTATCC-GTGGCTCGCTTCATACAGAACG 930
Query 1058 GCGGTTCGTAT-ATAAACTACTACATGTACCATGGAGGAACAAACTTTGGAC-GCACCGC 1115
| || || | | || |||||||| ||||||||||||||||| ||||| | || | || ||
Sbjct 931 GTGGCTCCT-TCATCAACTACTATATGTACCATGGAGGAACCAACTTCG-ACAGAACAGC 988
Query 1116 AGGAGGTCCATTTATCACCACTAGTTATGACTATGATGCTCCTATCGATGAATACGGGTT 1175
|| | ||| ||| |||| || |||||||||||||||||| | |||||||| |||||
Sbjct 989 TGGCGA---ATTCATCGCCACCAGCTATGACTATGATGCTCCTCTTGATGAATATGGGTT 1045
Query 1176 GGTCCAAGAGC-CC-AAGTACAGTCATCTT-AAGCAG-CTTCATCAGG-CAATCAAGCAA 1230
| || |||| || ||||| ||||| ||| || || || ||| ||| || ||||||
Sbjct 1046 G--CCGAGAGAACCTAAGTATAGTCA-CTTGAAA-AGGCTGCATAAGGTCA-TCAAGCTC 1100
Query 1231 TGTGAAGCTGCCTTAGTTTCTTCTGATCC 1259
|||||| | || || || ||| |||||||
Sbjct 1101 TGTGAACCGGCATTGGTCTCTGCTGATCC 1129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95987417400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5