BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G45145.1

Length=753
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg922950 jgi|Araly1|922950|scaffold_104231.1                        617    3e-176


> Ahg922950 jgi|Araly1|922950|scaffold_104231.1
Length=397

 Score =  617 bits (334),  Expect = 3e-176
 Identities = 376/396 (95%), Gaps = 3/396 (1%)
 Strand=Plus/Plus

Query  54   gcttaagaacaaataataaa-aatGGCCGGTGAAGGAGAAGTGATTGCTTGCCATACCCT  112
            |||| |||| ||| || ||| ||||||||| |||||||||||||| |||||||| |||||
Sbjct  1    GCTT-AGAAGAAA-AAAAAACAATGGCCGGAGAAGGAGAAGTGATCGCTTGCCACACCCT  58

Query  113  CGAAGTTTGGAACGAGAAGGTCAAAGACGCCAATGAATCCAAGAAACTGATTGTGATAGA  172
            ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct  59   CGAAGTTTGGAACGAGAAGGTTAAAGAAGCCAACGAATCCAAGAAACTGATTGTGATAGA  118

Query  173  CTTCACAGCATCATGGTGTCCACCTTGCCGTTTCATTGCACCAGTGTTTGCAGAGATGGC  232
            ||||||||||||||||||||||||||||||||||||||| || || |||||||| |||||
Sbjct  119  CTTCACAGCATCATGGTGTCCACCTTGCCGTTTCATTGCCCCCGTATTTGCAGACATGGC  178

Query  233  TAAGAAGTTCACTAATGTTGTCTTCTTCAAGATCGATGTTGATGAATTGCAAGCTGTTGC  292
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||
Sbjct  179  TAAGAAGTTCACTAATGTTTTCTTCTTCAAGATCGATGTTGATGAATTGCAAGATGTTGC  238

Query  293  TCAGGAATTCAAAGTTGAGGCAATGCCTACTTTTGTTTTCATGAAAGAAGGCAACATCAT  352
            | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  239  TAAGGAATTCAAAGTTGAGGCAATGCCTACTTTTGTTTTCATGAAAGAAGGCAACATCGT  298

Query  353  TGATCGTGTTGTCGGTGCTGCGAAAGATGAGATCAATGAGAAGCTGATGAAGCATGGTGG  412
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  299  TGATCGTGTTGTCGGTGCTGCGAAAGATGAGATCCATGAGAAGCTGATGAAGCATGGTGG  358

Query  413  TCTTGTAGCTTCTGCTTGATTGATTTCAGTTTCTAA  448
            ||||||||||||||||||||||||||||||||||||
Sbjct  359  TCTTGTAGCTTCTGCTTGATTGATTTCAGTTTCTAA  394



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27753483576


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5