BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45150.1
Length=2272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473837 jgi|Araly1|473837|fgenesh2_kg.1__3791__AT1G45150.1 3393 0.0
Ahg933702 jgi|Araly1|933702|scaffold_401690.1 296 4e-79
> Ahg473837 jgi|Araly1|473837|fgenesh2_kg.1__3791__AT1G45150.1
Length=2201
Score = 3393 bits (1837), Expect = 0.0
Identities = 2092/2213 (95%), Gaps = 26/2213 (1%)
Strand=Plus/Plus
Query 57 TGTTCTTTGGCTTCCTTTCACAAA-TCTCTCGCAAAACGCGATCGTCTCTCCTCCTTCTT 115
|||| ||| ||||||||||||||| | ||||||||||||||||||||||| || ||||||
Sbjct 1 TGTTGTTTTGCTTCCTTTCACAAAGTTTCTCGCAAAACGCGATCGTCTCTTCTTCTTCTT 60
Query 116 CAAGC--CCTGAAAGAATCTCCAGATTCTCTGCGACTTTCTCGGAAAACCaaaaaaaaaa 173
| | | | || || | || ||| ||||||||||||||| ||| | |||||||
Sbjct 61 C-TTCTTCTTCAATCCCTCACAAGTTTC-CTGCGACTTTCTCGGGAAA-C---AAAAAAA 114
Query 174 aTGGACAACAATGTATCT-CAAGAGATGACTGTGCCAGTAGAAGGAGTGGCTGGTGGAGG 232
||||||||||||| || | |||||||||||||| ||||||||||||||||||||||||||
Sbjct 115 ATGGACAACAATGGAT-TGCAAGAGATGACTGTACCAGTAGAAGGAGTGGCTGGTGGAGG 173
Query 233 AACAGCTTATGGGTTTAATGATGCTGAGCCACTTAAACAATCTACAGATCCATCAGAGGT 292
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 174 AACAGCTTATGGGTTTAATGATGCAGAGCCACTTAAACAATCTACGGATCCATCAGAGGT 233
Query 293 TCCAACTGCTGATTTGGTGAATGTTTGGTGTATGCCTAATACAGTTAATGTTGGTTCACA 352
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 TCCAACTGCTGATTTGGTGAATGTTTGGTGTATGCCTAATACTGTTAATGTTGGTTCACA 293
Query 353 AGAAACACCTCGAGCTCTAGAGCCTATAAATCTTTTGGCGGCTAGAAATGAAAGAGAAAG 412
|||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 294 AGAAACACCTCGTCCTCTAGAGCCTATAAATCTTTTGGCAGCTAGAAATGAGAGAGAAAG 353
Query 413 TTTTCAGATAGCCATGCGTCCTAAAGTTTCTTGGGCTGCTTCCAGCCCTTCCGGGATTGT 472
||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 354 TTTTCAGATCGCCATGCGCCCTAAAGTTTCTTGGGCTGCTTCCAGCCCTTCCGGGAGTGT 413
Query 473 TCAGGTTCAGTGCAGTGACTTATGCTCTTCTGCTGGAGATAGATTGGTTGTTGGCCAGTC 532
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 414 TCAGGTTCAGTGCAATGACTTATGCTCCTCTGCTGGAGATAGATTGGTTGTTGGCCAGTC 473
Query 533 ACTAAAGTTGCGGCGAGTGGTGCCTGTCTTAGGCGTTCCTGATGCTTTGGTGCCCCTTGA 592
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 474 GCTAAACTTGCGGCGAGTGGTGCCTGTCTTAGGTGTTCCTGATGCTTTGGTGCCCCTTGA 533
Query 593 TTTGCCTGTTTCTCAACTTAGCTTATTTCCAGGAGAAACAAGTGTCATTTGGGTCTCAAT 652
||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 TTTACCCGTTTCTCAACTTAGCTTATTTCCAGGAGAAACAAGTGTGATTTGGGTCTCAAT 593
Query 653 AGACGTTCCTACTGGGCAGCCTCCTGGTCAATATGAAGGAGAGATCATTATTTCTGCTAT 712
||||||||||| | |||||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 594 AGACGTTCCTAATCGGCAGCCTCCTGGTCAATATGAGGGAGAGATCATTGTTTCTGCAAT 653
Query 713 GAAAACTGATGGAGGCGGTTCTTCTCACTTGGCAAAGCATGAGAAGGATCAGCTCTGTGT 772
|||||||||||||||||||||| ||||||||| |||||||||||| |||||||| |||||
Sbjct 654 GAAAACTGATGGAGGCGGTTCTGCTCACTTGGGAAAGCATGAGAAAGATCAGCTATGTGT 713
Query 773 GGAACTTAATACCTGTCTTGATATTATGGAACCAATAGAGGGAAAACCCATGGATGAAGT 832
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 GGAACTTAATAACTGTCTTGATATTATGGAACCAATAGAGGGAAAACCCATGGATGAAGT 773
Query 833 GGTAGAAAGAATTAAATGTGCAAGTTCGTCATTAAGAAGAATTCTCTTCTCTCCATCATT 892
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 774 GGTAGAAAGAATAAAATGTGCAAGTTCGTCATTAAGAAGAATTATCTTCTCTCCATCATT 833
Query 893 TTCGGAGTTCATTTCTACGAATGGATCAACTGATATGATGGAAGAAGATGTTGTTTCAAA 952
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 834 TTCGGAGTTCATTTCTACGAATGGATCAACCGATATGATGGAAGAAGATGTTGTTTCAAA 893
Query 953 CCTTTCACTGCGTATCAAGCTAAGATTGACAGTTTGGGAATTTATTATTCCAGTGACTCC 1012
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 CCTTTCGCTGCGTATCAAGCTAAGATTGACAGTTTGGGAATTTATTATTCCAGTGACTCC 953
Query 1013 ATCACTCCCTGCTGTTATTGGTGTCTCTGACACTGTTATTGAGGATCGTTTTGCTGTTGA 1072
|||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 954 ATCACTCCCTTCTGTTATTGGCGTCTCTGACACTGTTATTGAGGATCGTTTTGGTGTTGA 1013
Query 1073 ACATGGAAGTGAAGATTGGTACAAGAAATTGGATCTCCATTTTAAATGGCTTCTTCAGTA 1132
|| |||||||||||| |||||| |||||||||||||||||||||| ||||| ||||||||
Sbjct 1014 ACGTGGAAGTGAAGAGTGGTACGAGAAATTGGATCTCCATTTTAAGTGGCTACTTCAGTA 1073
Query 1133 TCGGATCAGTCCGTACTTTTGCAAATGGGGTGAAAGCATGCGTGTCTTGACATACACCTC 1192
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1074 TCGGATCAGTCCATACTTTTGCAAATGGGGTGAAGGCATGCGTGTCTTGACATACACCTC 1133
Query 1193 ACCATGGCCTGCTGATCATCCAAAATCTGATGAATATCTCTCTGATTCAAGGCTTGCCGC 1252
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1134 ACCATGGCCTGCCGATCATCCAAAATCTGATGAATATCTCTCTGATCCAAGGCTTGCCGC 1193
Query 1253 ATATGCAGTACCGTATAGACAAGTTATAGCAGGGGATGAT-TCAAGGGAAAGTTATCTGC 1311
||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1194 TTATGCAGTACCGTATAGACAAGTTATAGCAGGGGATGATAT-ACGGGAAAGTTATCTGC 1252
Query 1312 GGAAAGAAGTTGAGATATTGAGAAGTAAACCCCATTGGAACAAAGCTTACTTTTACTTGT 1371
| ||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1253 GAAAAGAAGTTGAGATACTGAGGAGTAAACCCCATTGGAAAAAAGCTTACTTTTACTTGT 1312
Query 1372 GGGATGAGCCACTGAATATGGAGCACTTTGACAACGTTCGCAAGATGGCCAGTGAAATTT 1431
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1313 GGGATGAGCCACTGAATATGGAGCACTTTGACAGCGTTCGCAAGATGGCCAGTGAAATTT 1372
Query 1432 ACGCCTATGCCCCGGATTCTCGTGTTTTGACTACATACTACTGTGGACCGGGAGATGCAC 1491
||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||
Sbjct 1373 ACGCCTATGCCCCGGATGCTCGTGTTTTGACTACATACTACTGTGGACCCGGTGATGCAC 1432
Query 1492 CTCTTGCTCCGACACCTTTTGAATCTTTTGTCAAAGTTCCAAATCTCCTTCGACCCT-AT 1550
||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||| ||
Sbjct 1433 CTCTTGCTCCGACACCTTTCGAATCTTTTGTCAAAGTTCCAAATCTACTTCGA-CCTCAT 1491
Query 1551 ACTCAGATATACTGCACAAGTGAGTGGGTGCTTGGTAACCGGGAGGATTTGGTGAAGGAT 1610
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1492 ACTCAGATATACTGCACAAGTGAGTGGGTGCTTGGAAACCGGGAGGATTTGGTGAAGGAT 1551
Query 1611 ATTCTTGACGAATTGCAGACAGAGAATGGTGAGGAATGGTGGACATACATATGCCTTGGA 1670
||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1552 ATTGTTGAGGAATTGCAGACAGAGAATGGTGAGGAATGGTGGACGTACATATGCCTTGGA 1611
Query 1671 CCTTCAGATCCTCACCCAAATTGGCATCTGGGGATGCGTGGTACACAGCAACGGGCAGTG 1730
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1612 CCTTCAGATCCTCACCCAAATTGGCATCTGGGGATGCGTGGAACACAGCAACGGGCAGTG 1671
Query 1731 ATGTGGCGTGTGTGGAAAGAAGGTGGAACCGGGTTCTTGTACTGGGGTGCAAATTGCTAT 1790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1672 ATGTGGCGTGTGTGGAAAGAAGGTGGAACCGGGTTCTTGTACTGGGGTGCAAATTGCTAT 1731
Query 1791 GAGAAGGCAACGGTTCCAAGCGCCGAGGTAAAGTTTAGGCGCGGTCTTCCTCCTGGTGAT 1850
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1732 GAGAAGGCAACGGTTCCAAGCGCCGAGGTAAAGTTCAGGCGCGGTCTTCCTCCTGGTGAT 1791
Query 1851 GGAGTTCTTTACTACCCCGGTGAAGTTTTCTCATCTTCTTCAGAGCCAGTTGCTTCACTT 1910
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 1792 GGAGTTCTTTACTACCCCGGTGAAGTTTTCTCATCTTCCTCAGAGCCCGTTGCTTCACTT 1851
Query 1911 AGGCTAGAGCGCCTTCTTAGTGGCTTACAGGATTATGAGTACTTGAAGCTGTATGAGTCA 1970
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1852 AGGCTAGAGCGCCTTCTTAGTGGCTTACAGGATTATGAGTACTTAAAGCTGTATGAGTCA 1911
Query 1971 AAATACGGAAGAG-AGGAAGCGATGGGGCTATTGGAGAAGACAGGGGTGTACACGGGGCC 2029
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1912 AAATACGGAAGAGCAG-AAGCAATGGGGCTATTGGAGAAGACAGGGGTGTACACGGGGCC 1970
Query 2030 GGAGCGCTACACTTTGGAACATAGACCGATCGATGTATTGCGAGGAGAAGTGTACAACAC 2089
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1971 GGAGCGATACACTTTGGAACATAGACCAATCGATGTATTGCGAGGAGAAGTGTACAACAC 2030
Query 2090 ATGTAGACCATCTTGAGTAACCAGATCGTTTAGTATCTA--TA-A-ACACTCTCGGTTAG 2145
||||||||||||||||||||||||||||||| ||||||| || | ||||||| |||||
Sbjct 2031 ATGTAGACCATCTTGAGTAACCAGATCGTTTTGTATCTACCTATACACACTCTAAGTTAG 2090
Query 2146 CCCTAAGTTAATAATAAAAGAACATAA-CAAGAAAACTCTAACAATGTCTAGATTA-CCA 2203
|||||| |||| ||||||||||||||| || |||||||||||||| ||||||||| |||
Sbjct 2091 CCCTAATTTAACAATAAAAGAACATAAGCA-GAAAACTCTAACAACGTCTAGATTGTCCA 2149
Query 2204 GTGAAAAAGGTTAATTAGTATGAAAATAATAAAATAGATAGATT-TGCTTTGT 2255
|||||||||||||||||||||||||| ||||||||||||||||| | ||||||
Sbjct 2150 GTGAAAAAGGTTAATTAGTATGAAAACAATAAAATAGATAGATTGT-CTTTGT 2201
> Ahg933702 jgi|Araly1|933702|scaffold_401690.1
Length=382
Score = 296 bits (160), Expect = 4e-79
Identities = 211/235 (90%), Gaps = 6/235 (3%)
Strand=Plus/Plus
Query 921 ACTGATATGATGG-AAGAAGATGTTGTTTCAAACCTTTCACTGCGTATCAAGCTAAGATT 979
|||||||||| || ||| || |||||||||||||||| || || |||| |||||||||||
Sbjct 15 ACTGATATGA-GGAAAGCAGTTGTTGTTTCAAACCTTGCAGTGAGTATAAAGCTAAGATT 73
Query 980 GACAGTTTGGGAATTTATTATTCCAGTGACTCCATCACTCCCTGCTGTTAT-TGGTGTCT 1038
||||||||||||||||||||||| |||||||| ||||||| |||||||||| || ||||
Sbjct 74 GACAGTTTGGGAATTTATTATTCTAGTGACTCTATCACTCTCTGCTGTTATATGC-GTCT 132
Query 1039 CTGACACTGTTATTGAGGATCGTTTTGCTGTTGAACATGGAAGTGAAGATTGGTACAAGA 1098
|||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 133 CTGACACTGTAATTGAGGATCGTTTTGATGTTGAACATGGAAGTGAAGAGTGGTACAAGA 192
Query 1099 AATTGGATCTCCATTTTAAATGGCTTCTTCAGT-ATCGGATCAGTCCGTACTTTT 1152
| |||| |||||||||||| ||||||||||| | ||||||||| ||| |||||||
Sbjct 193 AGTTGGGTCTCCATTTTAAGTGGCTTCTTCA-TCATCGGATCAATCCATACTTTT 246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85550690270
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5