BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45170.1
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922958 jgi|Araly1|922958|scaffold_104239.1 1003 0.0
> Ahg922958 jgi|Araly1|922958|scaffold_104239.1
Length=690
Score = 1003 bits (543), Expect = 0.0
Identities = 623/663 (94%), Gaps = 0/663 (0%)
Strand=Plus/Plus
Query 99 GATGAAGGCTTCTTTCAAGGGAAAGTTCGATGTCGACAAGAGCGGTAGCGTTGCTTCGCT 158
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 27 GATGAAAGCTTCTTTCAAGGGAAAGTTCGATGTCGACAAGAGCGGTGGCGTTGCTTCGCT 86
Query 159 TACCTTCAACGCCGGCAATGCTAAGCTACGAGCCACCATGACTGATGCTTCCTTCGTCGC 218
| ||||||||||||||||||| |||||||| ||||||||||||||| ||||| |||||||
Sbjct 87 TTCCTTCAACGCCGGCAATGCCAAGCTACGCGCCACCATGACTGATACTTCCCTCGTCGC 146
Query 219 CGGTCCTAGCTTTAATGGTCTCTCTCTCGCCGTTGAGAAGCCTGGCTTCTTCATCATCGA 278
|||||||||||| || || |||||||||||||| ||||||||||||||||||||||| ||
Sbjct 147 CGGTCCTAGCTTGAACGGCCTCTCTCTCGCCGTCGAGAAGCCTGGCTTCTTCATCATTGA 206
Query 279 CTACAACGTCCCTAAAAAGGATGTTAGGTTTCAGTTTATGAACACTATCAGAATTGCAGA 338
|||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||||
Sbjct 207 CTACAACGTCCCTAAAAAGGATGTGAGGTTTCAGTTCATGAACACTGTTAGAATTGCAGA 266
Query 339 GAAGCCTTTGAATCTGACTTACATTCATATGAGAGGAGATAACCGGACGATTGTTGACGG 398
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 267 GAAGCCTTTGAATCTGACTTACATTCATATGAGAGGAGATAACCGGACAATTGTTGACGG 326
Query 399 GAGTTTTGTGATTGATCCAGCAAACAAGTTGTCTGCTAATTACATGGTGGGTACAAAGAA 458
|||| ||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 327 GAGTCTTGTGATTGATCCGGCTAACAAGTTGTCTGCTAATTACATGGTGGGCACTAAGAA 386
Query 459 TTGTAAGCTGAAGTATACTTATGTTCATGGAGGGATAGCTACATTTGAGCCTTGTTATGA 518
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 387 CTGTAAGCTGAAGTATACTTATGTTCATGGAGGGATAGCTACATTTGAGCCATGTTATGA 446
Query 519 CGTGGCTAAGAATATGTGGGACTTTGCGATTTCTCATAAACTTTATGGTGGTGATAATCT 578
| || |||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 447 CTTGTCTAAGAATGTGTGGGACTTTGCGGTTTCTCGGAAACTTTATGGTGGTGATAATCT 506
Query 579 CAAGGCAACTTATCAGACTTCTAGTAAGATGCTTGGTTTGGAATGGTCGAACAACTCTAA 638
|||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 507 CAAGGCCACTTATCAGACTTCTAGTAAGATGCTTGGTTTGGAATGGTCGAGGAATTCTCA 566
Query 639 ATCAACTGGATCTTTCAAGGTATGTGCATCAATGAATCTAGCTGAGGAATTGAAGCCGCC 698
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 567 ATCGACTGGATCTTTCAAGGTATGTGCATCAATGAATCTAGCCGAGGAATTGAAGCCACC 626
Query 699 AAAACTGACCGCAGAAACTACATGGAACCTGGAACTTTAGCTCCCAAAAAGTCTCAATTC 758
|||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 627 AAAACTGACCGCAGAAACTACATGGAACCTGGAAATTTAGCTCCCAAGAAGTCTCAATTC 686
Query 759 TTT 761
|||
Sbjct 687 TTT 689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36826737822
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5