BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G45170.1 Length=991 Score E Sequences producing significant alignments: (Bits) Value Ahg922958 jgi|Araly1|922958|scaffold_104239.1 1003 0.0 > Ahg922958 jgi|Araly1|922958|scaffold_104239.1 Length=690 Score = 1003 bits (543), Expect = 0.0 Identities = 623/663 (94%), Gaps = 0/663 (0%) Strand=Plus/Plus Query 99 GATGAAGGCTTCTTTCAAGGGAAAGTTCGATGTCGACAAGAGCGGTAGCGTTGCTTCGCT 158 |||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 27 GATGAAAGCTTCTTTCAAGGGAAAGTTCGATGTCGACAAGAGCGGTGGCGTTGCTTCGCT 86 Query 159 TACCTTCAACGCCGGCAATGCTAAGCTACGAGCCACCATGACTGATGCTTCCTTCGTCGC 218 | ||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||||||| Sbjct 87 TTCCTTCAACGCCGGCAATGCCAAGCTACGCGCCACCATGACTGATACTTCCCTCGTCGC 146 Query 219 CGGTCCTAGCTTTAATGGTCTCTCTCTCGCCGTTGAGAAGCCTGGCTTCTTCATCATCGA 278 |||||||||||| || || |||||||||||||| ||||||||||||||||||||||| || Sbjct 147 CGGTCCTAGCTTGAACGGCCTCTCTCTCGCCGTCGAGAAGCCTGGCTTCTTCATCATTGA 206 Query 279 CTACAACGTCCCTAAAAAGGATGTTAGGTTTCAGTTTATGAACACTATCAGAATTGCAGA 338 |||||||||||||||||||||||| ||||||||||| ||||||||| | ||||||||||| Sbjct 207 CTACAACGTCCCTAAAAAGGATGTGAGGTTTCAGTTCATGAACACTGTTAGAATTGCAGA 266 Query 339 GAAGCCTTTGAATCTGACTTACATTCATATGAGAGGAGATAACCGGACGATTGTTGACGG 398 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 267 GAAGCCTTTGAATCTGACTTACATTCATATGAGAGGAGATAACCGGACAATTGTTGACGG 326 Query 399 GAGTTTTGTGATTGATCCAGCAAACAAGTTGTCTGCTAATTACATGGTGGGTACAAAGAA 458 |||| ||||||||||||| || ||||||||||||||||||||||||||||| || ||||| Sbjct 327 GAGTCTTGTGATTGATCCGGCTAACAAGTTGTCTGCTAATTACATGGTGGGCACTAAGAA 386 Query 459 TTGTAAGCTGAAGTATACTTATGTTCATGGAGGGATAGCTACATTTGAGCCTTGTTATGA 518 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 387 CTGTAAGCTGAAGTATACTTATGTTCATGGAGGGATAGCTACATTTGAGCCATGTTATGA 446 Query 519 CGTGGCTAAGAATATGTGGGACTTTGCGATTTCTCATAAACTTTATGGTGGTGATAATCT 578 | || |||||||| |||||||||||||| |||||| ||||||||||||||||||||||| Sbjct 447 CTTGTCTAAGAATGTGTGGGACTTTGCGGTTTCTCGGAAACTTTATGGTGGTGATAATCT 506 Query 579 CAAGGCAACTTATCAGACTTCTAGTAAGATGCTTGGTTTGGAATGGTCGAACAACTCTAA 638 |||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| | Sbjct 507 CAAGGCCACTTATCAGACTTCTAGTAAGATGCTTGGTTTGGAATGGTCGAGGAATTCTCA 566 Query 639 ATCAACTGGATCTTTCAAGGTATGTGCATCAATGAATCTAGCTGAGGAATTGAAGCCGCC 698 ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 567 ATCGACTGGATCTTTCAAGGTATGTGCATCAATGAATCTAGCCGAGGAATTGAAGCCACC 626 Query 699 AAAACTGACCGCAGAAACTACATGGAACCTGGAACTTTAGCTCCCAAAAAGTCTCAATTC 758 |||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| Sbjct 627 AAAACTGACCGCAGAAACTACATGGAACCTGGAAATTTAGCTCCCAAGAAGTCTCAATTC 686 Query 759 TTT 761 ||| Sbjct 687 TTT 689 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36826737822 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5