BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45180.1
Length=2430
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473842 jgi|Araly1|473842|fgenesh2_kg.1__3796__AT1G45180.1 3254 0.0
> Ahg473842 jgi|Araly1|473842|fgenesh2_kg.1__3796__AT1G45180.1
Length=2411
Score = 3254 bits (1762), Expect = 0.0
Identities = 2222/2440 (91%), Gaps = 48/2440 (2%)
Strand=Plus/Plus
Query 10 TCTCATTTGGTTTGTGTGctttgctttcgctttcctcaattctcttcttcttcatt-att 68
||||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct 1 TCTCATTTGGTTTGTGTGCTTCGCTTTCGCTTTCCTCAATTCTCTTCTTCTTC-TTCATT 59
Query 69 tttgcct-tttacctcttttctctgcaatcggtttcttctctcATTGTCTTTGACGAAAG 127
||||||| ||| ||||||||||| |||||||||||||||||||||||||||| | | |
Sbjct 60 TTTGCCTATTTCCCTCTTTTCTCCGCAATCGGTTTCTTCTCTCATTGTCTTT-A-G--CG 115
Query 128 AATCTACCCATAAGAGCGTTTCTTTGCTTTCTCAACCATAACTTTCTCAGATCGA-TTGG 186
| | | | ||| | |||||||||||| ||||| |||||||||| ||
Sbjct 116 --T-T-----T-----C-TTT-GCT-CTTTCTCAACCAAAACTTCCTCAGATCGATTTCT 159
Query 187 TTTCTTCAAGCGATTGTTTCCAGGATTTGCTAGATTGTGAAAAGTGGTGAGAGTCTCTTG 246
||| ||| | | |||||| ||| |||| ||| |||||| ||||||||||||||||||||
Sbjct 160 TTTTTTC-TGGGTTTGTTTGCAGCATTTTCTACATTGTGGAAAGTGGTGAGAGTCTCTTG 218
Query 247 ATTTGTCAAGTGTC-AACTGTGGTTAACGATAGGATGCAGGGAGAGAGGGCTAGTCTTGG 305
| |||||||||||| ||||||| |||||| |||||||||||||||||||||| |||| ||
Sbjct 219 AATTGTCAAGTGTCAAACTGTGATTAACGCTAGGATGCAGGGAGAGAGGGCTGGTCTCGG 278
Query 306 TTCTTTATCAAAGGCTTTGAACTTTGAGCGCGGTTCTACGTCTAGTAACGCTGTGGTAGA 365
||||||||| |||| ||||| ||||||| |||||||| |||||||| |||||| ||||
Sbjct 279 TTCTTTATCGGAGGCCTTGAATTTTGAGCATGGTTCTACATCTAGTAATGCTGTGATAGA 338
Query 366 TCAGCAAATTCGTTGGGAGAATCTTCACAATTATGGTGATAATGATTTGCAGGATTACAT 425
|||||| ||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 339 TCAGCAGATTCGTTGGGAGAATATTCACAATTATGGTGATAATGAGTTGCAGGATTACAT 398
Query 426 GAGTTCAGCTGCTGATACAAATCCTACTTTTGCAAACTCAGTTTATCATGAGAAACGGGG 485
||||| || ||||||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 399 GAGTTTAGGTGCTGATACGAATCCTGCTTTTGCAAACTCAGTTTATCATGAGCAACGGGG 458
Query 486 CTTGCAGAGGTTTAACATTGGTGAGGCTAGCTCTAGTGGGACGAAGAACGAAGGGGCAAG 545
||| || |||||||||||||||||||||||||||||||| ||||||||||||| | ||
Sbjct 459 CTTACACAGGTTTAACATTGGTGAGGCTAGCTCTAGTGGTACGAAGAACGAAGCCACTAG 518
Query 546 TCTCACTGAACAATGGAAGGGAATTGGAAGGTTTGAGGAACAGAGGAATGATAAGCTTGA 605
|| ||||||||| ||||||||||||||| | |||||||| | ||| ||||| ||| ||||
Sbjct 519 TCACACTGAACAGTGGAAGGGAATTGGACGATTTGAGGAGCGGAGAAATGACAAGATTGA 578
Query 606 GTTGAGCCCTTTGTTTGTGCAACCATCTAATGGAAGCCGCGTGGTTCGTGATGTCAATCT 665
||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 579 GTTGAGCCCTTTGTTTGTGCAACCATCTAATGGAAGCCGTGTGGTTCGCAATGTCAATCT 638
Query 666 AAATGCAGAATACAATGAGCATCTTGAGGATATGAATCCGGTTACAGTTCATCCTGGTCA 725
|||||| ||||| ||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct 639 AAATGCTGAATATAATGAGCATCTTGAGGATATGAATCTGGTCACAGGTCATCCTGGTCA 698
Query 726 TTTTGAGGTTAATGGACTTAGGTCTGAGTTTTTACTAGATAACAGT-GT-T-AGAGCTGG 782
|||||||||||||||||| ||||||| | |||||| ||| ||| || || | ||||| ||
Sbjct 699 TTTTGAGGTTAATGGACTCAGGTCTGGGCTTTTACCAGAGAACGGTGGTGTCAGAGCGGG 758
Query 783 TTCCTCTGTTGATGGACGTCGTGCATCCTGTAAAAGAAAAGCTCTTGATGCAAGCGGTGG 842
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct 759 TTCCTCTGTAGATGGGCGTCGTGCATCCTGTAAAAGAAAAGCTCTTGATGCAAGCATTGG 818
Query 843 TCAGTCCTCTTCAA-CTGGAGGTTTCCGTGAGTTCCAGCGTGGAGTATCCAGTTCTTGGA 901
|||||||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 819 TCAGTCCTCTTCAAGC-GGAGGTTTCCGTGAGTTCCAGCATGGAGAATCCAGTTCTTGGA 877
Query 902 TCTCAGGTCCTACGTATTACAGCCCAGCAATGACAGCAAATGATTTAAACATATCTCTTG 961
|||||| |||| ||||||| |||| | ||||| |||||||||||||||||||||||||||
Sbjct 878 TCTCAGCTCCTGCGTATTATAGCCAACCAATGGCAGCAAATGATTTAAACATATCTCTTG 937
Query 962 ATCATGGTCGAAGGGGTTTGGTATCTAGCGCTGTTCCAAATCTATCTCCTCCTACCATCA 1021
|||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||||
Sbjct 938 ATCATGGTCGAAGGGGTTTGGTATCTGGCGCTGTTCCAAATCTATCTGCTCCTGGCATCA 997
Query 1022 CAGAGAGCTCTAGTAGAAATTACCCTGTCTGGGTTAATCCCACATATCAACAAGAAACCG 1081
||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||| |
Sbjct 998 CAGAGAGCTCTAGTAGAAATTACTCTGTCTGGGTTAATCCCGCAGATCAACAAGAAACTG 1057
Query 1082 TAAGC---AA---TTTTGCTCCATCCTTGAACTCACCAGGGCTTATACCTGCAGATCACC 1135
||||| || ||||||||||||||||||||||||||||||| |||| |||||||| |
Sbjct 1058 TAAGCAGGAAGTGTTTTGCTCCATCCTTGAACTCACCAGGGCTTCTACCAGCAGATCAAC 1117
Query 1136 AGCAGATCAG-CATGAGATATGGACATGCGTTAGGCAATTTTGCATCTCAGAACCCAAAT 1194
| | |||| | | |||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 1118 AACTGATC-GACTTGAGATATGGACATGCTTTAGGCAATTTTGCTTCTCAGAACCCAAAT 1176
Query 1195 GCTCCTGCTACTCATATGCCCCCTGTTTCAAGAAATACATTTCAATGGAACACAAGCCCC 1254
|||||||| |||||||||||||||||||| ||||||||||||||||||||| | |||||
Sbjct 1177 GCTCCTGCAACTCATATGCCCCCTGTTTCTAGAAATACATTTCAATGGAACGCTAGCCCA 1236
Query 1255 GTGGCAGC-GGTTATATCATCTAGTTCTGCTACTCCTGTTGACAGAAATGTTATTCATCG 1313
|||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1237 GTGGCAGCGGGTT-TATCATCGAGTTCTGCTACTCCTGTTGACAGAAATGTTATTCATCG 1295
Query 1314 AAATGCAACCAGACAAAGAAGTAATACTCTAGAGATTCCCTTGTTTGTCCCAGCTCCTGA 1373
| ||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1296 AGATGAAACCAGACACAGAAGTAATAGTCTAGAGATTCCCTTGTTTGTCCCAGCTCCTGA 1355
Query 1374 ACTGAGAAATGTGGCCCATGGTCATATTAGCAGAAATGCAAGTGGTGCTAGACATGTTGC 1433
||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1356 ACTGAGAAATGTGGCGCATGGTCATATTAACAGAAATGCAAGTGGTGCTAGACATGTTGC 1415
Query 1434 ATCGTCTTCATCCAGGACAAGTGTTCAGCCATCACCGTCTAGTCCAGCATTGACTCCTTA 1493
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1416 ATCGTCTTCATCCAGGACAAGTGTTCAGCCATCACCGTCTAGTCCAGCATTGAATCCTTA 1475
Query 1494 CCAGAATAACTCACTACATAATCAAAGAAGATTATCTGAAAACTTTCGTAGGTCATTGCT 1553
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1476 CCAGAATAACTCACCACATAATCAAAGAAGATTATCTGAACACTTTCGTAGGTCATTGCT 1535
Query 1554 TTCTTCCCTTGTTACACAGCAGAGGGCTGCTCGTTCATTGG-CCCATCCTGCCTCTCCAA 1612
||||||||||| |||||| ||||| ||||||| ||| |||| ||| |||| |||||||
Sbjct 1536 TTCTTCCCTTGCTACACACCAGAGAGCTGCTCATTCCTTGGTCCC-TCCTTCCTCTCCGG 1594
Query 1613 ATGAGCACGTGCTTCAATCTGGTGGTGATAACACCTCTCAGGTGCATAATCGAGCTTCCT 1672
||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct 1595 ATGAGCATGTGCTTCAATCTGGTGGTGTTAACACCTCTCAGGTGCATAATCGGGCTTCCT 1654
Query 1673 CGAGAGCAGGTCCAAGACAAGGGCAAGATGCAACTGGCATTTCTCATTCTTTGCGAGGCT 1732
|||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1655 CGAGAGCAGGTCCAAGGCAAGGGCAAAATGCAACTGGCATTCCTCATTCTTTGCGAGGCT 1714
Query 1733 TGGCATCCACAAGTCGAGGAAGAACCAGAATGGGGGCATCCGAGATCCGTAACATCTTGG 1792
|||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct 1715 TGGCATCCACAAGTCGAGGAAGAAGCAGAATGGGGGCAGCCGAGATCCGTAATGTCTTGG 1774
Query 1793 AGCACATGCGTAGAGCAGGGAACTTGCGTTTGGAGGATGTTATGCTTCTCAATCAGTCCA 1852
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1775 AGCACATGCGTAGAGCAGGGAACTTGCGTTTTGAGGATGTTATGCTTCTCAATCAGTCAA 1834
Query 1853 TAATGCTAGGTGCGGCTGATATTCATGACCGATATAGAGACATGCGACTTGATGTTGACA 1912
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1835 TGGCGCTAGGTGTGGCTGATATTCATGACCGATATAGAGACATGCGACTTGATGTTGACA 1894
Query 1913 ACATGACATATGAGGAGCTGTTGTCTCTAGAAGAACGGATTGGAGATGTTTGTACCGGTT 1972
||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 1895 ACATGACATATGAGGAGTTGTTGTCTCTAGAAGAGCGGATTGGAGATGTTTGTACCGGTT 1954
Query 1973 TGAACGAGGAAACCATATCAAACCGATTGAAGCAGCAGAAGTACAAAAGTAGTACTAGAT 2032
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 1955 TGAATGAGGAAACCATATCAAACCGATTGAAGCAACAGAAGTACAAAAGTAGTACCAGTT 2014
Query 2033 CTTCACAAGAAGTAGAACCATGCTGTGTTTGTCAGGAGGAATATAAGGAAGAAGAAGA-A 2091
|| | ||||||||||||||||||||| |||||||||||||||| ||||||| |||||| |
Sbjct 2015 CTCCTCAAGAAGTAGAACCATGCTGTATTTGTCAGGAGGAATACAAGGAAGGAGAAGATA 2074
Query 2092 ATAGGAAGGCTGGAATGTGGACACGACTTTCATAGTCAATGCATCAAAGAATGGCTGAAG 2151
| ||||| | |||| || || |||||||| ||||| ||||||||||||||||||||||||
Sbjct 2075 A-AGGAATGTTGGAGTGCGGGCACGACTTCCATAGCCAATGCATCAAAGAATGGCTGAAG 2133
Query 2152 CAGAAGAATCTTTGCCCGATTTGCAAAACAACAGGATTAAACACTGCAAATAAGCCACA- 2210
||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| |
Sbjct 2134 CAGAAGAATCTTTGCCCCATTTGCAAAACCACAGGATTAAACACTGCAGATAAGCCA-AG 2192
Query 2211 AAGATAATGATCGAAAGACTGTTGGGTTCTAACCATTTGTCGAATCTTCAATACCATTGA 2270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2193 AAGATAATGATCGAAAGACTGTTGGGTTCTAACCATTTGTCGAATCTTCAATACCATCGC 2252
Query 2271 AGCCTCATCAGAACACTGCAGGCAAGTTGGTGTCTGCTTTTGGGGTTGACTGAAGATAGG 2330
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2253 AGCCTCATCAGAACACTGCAGGCAAGTTGGTGTCTGCGTTTGGGGTTGACTGAAGATAGG 2312
Query 2331 AATGAAGGGAAAGTAACTGAGGGGGATAGAGAGAACAGGAGAACCTAAGAAAAAACTTTG 2390
||||||||||| ||||||||||| ||||||||||| |||||||||| ||||||||||| |
Sbjct 2313 AATGAAGGGAA-GTAACTGAGGGAGATAGAGAGAAAAGGAGAACCTGAGAAAAAACTTGG 2371
Query 2391 GTTCTTCTGAATTTATTTCTATAAGTTAATTTTACCAATT 2430
|||||||||||||| ||| ||||||||||||||||||||
Sbjct 2372 GTTCTTCTGAATTTGTTTGGATAAGTTAATTTTACCAATT 2411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 91568948980
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5