BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G45190.1 Length=654 Score E Sequences producing significant alignments: (Bits) Value Ahg928921 jgi|Araly1|928921|scaffold_301378.1 621 2e-177 Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024 361 4e-99 > Ahg928921 jgi|Araly1|928921|scaffold_301378.1 Length=562 Score = 621 bits (336), Expect = 2e-177 Identities = 485/556 (87%), Gaps = 14/556 (3%) Strand=Plus/Plus Query 29 TTCTTACATCCAAAAACAAAAACAAATATGGCAAAATCTCTTCTCATGGTAATGCTCGTG 88 ||||||| ||||||| ||||| ||||||||||||| ||| || ||||||||||||||||| Sbjct 1 TTCTTACTTCCAAAACCAAAAGCAAATATGGCAAAGTCTGTTTTCATGGTAATGCTCGTG 60 Query 89 TCTATAGTAATGTTTTACATGGCTCGTCCAATTTGCTCCCAAAAAATTAATCCACATTCA 148 || ||||||||| | | | ||||||||| |||||| ||||| ||||| ||||| Sbjct 61 TCCATAGTAATG--GT---T---T-GTCCAATTTTCTCCCAGGAAATTGATCCATATTCA 111 Query 149 CAGGAGATGCCAGAAGATGTGGCCATATCTCCATCTTCAGATTTTG--A-TTACGTCGAA 205 |||||| |||||||||||||||||||||||||| |||||||||| | | |||||| ||| Sbjct 112 CAGGAGGTGCCAGAAGATGTGGCCATATCTCCAACTTCAGATTTCGATATTTACGTTGAA 171 Query 206 GCTCCCGATGAAGCTCCATTCGAAGAAGCTGATTCACCCGCAATGGAATATGATAGGGAG 265 | |||||||||||||||||||||||||||| ||||||||||||||||||||| | |||| Sbjct 172 TCCCCCGATGAAGCTCCATTCGAAGAAGCTGGTTCACCCGCAATGGAATATGACATGGAG 231 Query 266 CTTGCTCACCATTACTCGGACAAACAGCTCAAGTTTCTTGAGGCTTGCTCTGAAAAGCCG 325 |||||||||||||||||| ||||||||||| | ||||| |||||||| ||||||||||| Sbjct 232 CTTGCTCACCATTACTCGCACAAACAGCTCGATTTTCTCCAGGCTTGCGCTGAAAAGCCG 291 Query 326 AG-TTCAAAATGCGGAAATGAGGTTTTCAAGAACATGTTAAATGAGACAATGCCAATTAC 384 || | |||||||||| |||||||||||||||||||||| ||||||| | ||||||||| Sbjct 292 AGCGT-AAAATGCGGAGATGAGGTTTTCAAGAACATGTTGGATGAGACTACGCCAATTAC 350 Query 385 GGAGGAATGTTGTCGTGATATATTGAAGATGGGCAAAGATTGCCATCTAGGATTGGTTAA 444 || |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 351 AGATGAATGTTGTCGTGATATATTGAAGATGGGCAAAGATTGTCATCTCGGATTGGTTAA 410 Query 445 ACTCATATTTGCCACATATGAGTATAAAAATATTGCATCTAAGGGCATTCCAAAGAGCAA 504 | ||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| || || Sbjct 411 AATCATATTCGCCACGTATGAATATAAGAATATTGCATCTAAGGGTATTCCAAATAGTAA 470 Query 505 ACAAGCATGGAATGAATGTATTCGTAGAGTAGGTAGCAAGATTGGTGCTCCAGTCTCTTT 564 |||| |||||||||| ||| | |||||||| || ||||||||||||||||| || ||||| Sbjct 471 ACAAACATGGAATGATTGTGTCCGTAGAGTTGGGAGCAAGATTGGTGCTCCGGTTTCTTT 530 Query 565 TGAACAATAAACTAAT 580 || || ||||||||| Sbjct 531 GGAGCAGTAAACTAAT 546 > Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024 Length=405 Score = 361 bits (195), Expect = 4e-99 Identities = 293/340 (86%), Gaps = 8/340 (2%) Strand=Plus/Plus Query 239 TCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATTACTCGGACAAACAGCTCAAG 298 ||||||||||| |||||||| | |||| || ||||||||||||| ||||||||||| | Sbjct 70 TCACCCGCAATAGAATATGACATGGAGATTTCTCACCATTACTCACACAAACAGCTCGA- 128 Query 299 TTT-CTTGAGGCTTGCTCTGAAAAGCCGAGTTCAAAATGCGGAAATGAGGTTTTCAAGAA 357 ||| |||||||||||| |||| |||||||| |||||||||||||||||||||||||||| Sbjct 129 TTTCCTTGAGGCTTGCGCTGACAAGCCGAGCACAAAATGCGGAAATGAGGTTTTCAAGAA 188 Query 358 CATGTTAAATGAGACAATGCCAATTACGGAGGAATGTTGTCGTGATATATTGAAGATGGG 417 |||||| ||||||| | ||||||||| || | ||||||||||||||||||||||||||| Sbjct 189 CATGTTGGATGAGACGACGCCAATTACAGATGCATGTTGTCGTGATATATTGAAGATGGG 248 Query 418 CAAAGATTGCCATCTAGGATTGGTT-AAACTCATATTTGCCACATATGAGTATAAAAATA 476 |||||||||||||| ||||||||| ||| ||||||| ||||| ||||||| ||| ||| Sbjct 249 AAAAGATTGCCATCTTGGATTGGTTCAAA-TCATATTCGCCACGTATGAGTTTAAGAATT 307 Query 477 TTGCATCTAAGGGCATTCC-AAAGAGCAAACAAGCATGGAATGAATGTATTCGTAGAGTA 535 || |||||||||| ||||| ||| || |||||| |||||||||| ||| | |||||||| Sbjct 308 TTTCATCTAAGGGTATTCCGAAA-AGTAAACAAACATGGAATGATTGTGTCCGTAGAGTT 366 Query 536 GGTAGCAAGATTGGTGCTCCAG-TCTCTTTTGAACAATAA 574 || | ||||||||||||||| | | |||||||| || ||| Sbjct 367 GGGAACAAGATTGGTGCTCCGGAT-TCTTTTGAGCAGTAA 405 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23979314793 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5