BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45190.1
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
Ahg928921 jgi|Araly1|928921|scaffold_301378.1 621 2e-177
Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024 361 4e-99
> Ahg928921 jgi|Araly1|928921|scaffold_301378.1
Length=562
Score = 621 bits (336), Expect = 2e-177
Identities = 485/556 (87%), Gaps = 14/556 (3%)
Strand=Plus/Plus
Query 29 TTCTTACATCCAAAAACAAAAACAAATATGGCAAAATCTCTTCTCATGGTAATGCTCGTG 88
||||||| ||||||| ||||| ||||||||||||| ||| || |||||||||||||||||
Sbjct 1 TTCTTACTTCCAAAACCAAAAGCAAATATGGCAAAGTCTGTTTTCATGGTAATGCTCGTG 60
Query 89 TCTATAGTAATGTTTTACATGGCTCGTCCAATTTGCTCCCAAAAAATTAATCCACATTCA 148
|| ||||||||| | | | ||||||||| |||||| ||||| ||||| |||||
Sbjct 61 TCCATAGTAATG--GT---T---T-GTCCAATTTTCTCCCAGGAAATTGATCCATATTCA 111
Query 149 CAGGAGATGCCAGAAGATGTGGCCATATCTCCATCTTCAGATTTTG--A-TTACGTCGAA 205
|||||| |||||||||||||||||||||||||| |||||||||| | | |||||| |||
Sbjct 112 CAGGAGGTGCCAGAAGATGTGGCCATATCTCCAACTTCAGATTTCGATATTTACGTTGAA 171
Query 206 GCTCCCGATGAAGCTCCATTCGAAGAAGCTGATTCACCCGCAATGGAATATGATAGGGAG 265
| |||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||
Sbjct 172 TCCCCCGATGAAGCTCCATTCGAAGAAGCTGGTTCACCCGCAATGGAATATGACATGGAG 231
Query 266 CTTGCTCACCATTACTCGGACAAACAGCTCAAGTTTCTTGAGGCTTGCTCTGAAAAGCCG 325
|||||||||||||||||| ||||||||||| | ||||| |||||||| |||||||||||
Sbjct 232 CTTGCTCACCATTACTCGCACAAACAGCTCGATTTTCTCCAGGCTTGCGCTGAAAAGCCG 291
Query 326 AG-TTCAAAATGCGGAAATGAGGTTTTCAAGAACATGTTAAATGAGACAATGCCAATTAC 384
|| | |||||||||| |||||||||||||||||||||| ||||||| | |||||||||
Sbjct 292 AGCGT-AAAATGCGGAGATGAGGTTTTCAAGAACATGTTGGATGAGACTACGCCAATTAC 350
Query 385 GGAGGAATGTTGTCGTGATATATTGAAGATGGGCAAAGATTGCCATCTAGGATTGGTTAA 444
|| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 351 AGATGAATGTTGTCGTGATATATTGAAGATGGGCAAAGATTGTCATCTCGGATTGGTTAA 410
Query 445 ACTCATATTTGCCACATATGAGTATAAAAATATTGCATCTAAGGGCATTCCAAAGAGCAA 504
| ||||||| ||||| ||||| ||||| ||||||||||||||||| |||||||| || ||
Sbjct 411 AATCATATTCGCCACGTATGAATATAAGAATATTGCATCTAAGGGTATTCCAAATAGTAA 470
Query 505 ACAAGCATGGAATGAATGTATTCGTAGAGTAGGTAGCAAGATTGGTGCTCCAGTCTCTTT 564
|||| |||||||||| ||| | |||||||| || ||||||||||||||||| || |||||
Sbjct 471 ACAAACATGGAATGATTGTGTCCGTAGAGTTGGGAGCAAGATTGGTGCTCCGGTTTCTTT 530
Query 565 TGAACAATAAACTAAT 580
|| || |||||||||
Sbjct 531 GGAGCAGTAAACTAAT 546
> Ahg913770 jgi|Araly1|913770|Al_scaffold_0001_4024
Length=405
Score = 361 bits (195), Expect = 4e-99
Identities = 293/340 (86%), Gaps = 8/340 (2%)
Strand=Plus/Plus
Query 239 TCACCCGCAATGGAATATGATAGGGAGCTTGCTCACCATTACTCGGACAAACAGCTCAAG 298
||||||||||| |||||||| | |||| || ||||||||||||| ||||||||||| |
Sbjct 70 TCACCCGCAATAGAATATGACATGGAGATTTCTCACCATTACTCACACAAACAGCTCGA- 128
Query 299 TTT-CTTGAGGCTTGCTCTGAAAAGCCGAGTTCAAAATGCGGAAATGAGGTTTTCAAGAA 357
||| |||||||||||| |||| |||||||| ||||||||||||||||||||||||||||
Sbjct 129 TTTCCTTGAGGCTTGCGCTGACAAGCCGAGCACAAAATGCGGAAATGAGGTTTTCAAGAA 188
Query 358 CATGTTAAATGAGACAATGCCAATTACGGAGGAATGTTGTCGTGATATATTGAAGATGGG 417
|||||| ||||||| | ||||||||| || | |||||||||||||||||||||||||||
Sbjct 189 CATGTTGGATGAGACGACGCCAATTACAGATGCATGTTGTCGTGATATATTGAAGATGGG 248
Query 418 CAAAGATTGCCATCTAGGATTGGTT-AAACTCATATTTGCCACATATGAGTATAAAAATA 476
|||||||||||||| ||||||||| ||| ||||||| ||||| ||||||| ||| |||
Sbjct 249 AAAAGATTGCCATCTTGGATTGGTTCAAA-TCATATTCGCCACGTATGAGTTTAAGAATT 307
Query 477 TTGCATCTAAGGGCATTCC-AAAGAGCAAACAAGCATGGAATGAATGTATTCGTAGAGTA 535
|| |||||||||| ||||| ||| || |||||| |||||||||| ||| | ||||||||
Sbjct 308 TTTCATCTAAGGGTATTCCGAAA-AGTAAACAAACATGGAATGATTGTGTCCGTAGAGTT 366
Query 536 GGTAGCAAGATTGGTGCTCCAG-TCTCTTTTGAACAATAA 574
|| | ||||||||||||||| | | |||||||| || |||
Sbjct 367 GGGAACAAGATTGGTGCTCCGGAT-TCTTTTGAGCAGTAA 405
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23979314793
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5