BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45191.1
Length=1688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314159 jgi|Araly1|314159|fgenesh1_pm.C_scaffold_1002939 1319 0.0
Ahg326101 jgi|Araly1|326101|fgenesh1_pm.C_scaffold_6001321 830 0.0
Ahg492664 jgi|Araly1|492664|fgenesh2_kg.7__2097__AT4G22100.1 773 0.0
Ahg315321 jgi|Araly1|315321|fgenesh1_pm.C_scaffold_2000354 529 3e-149
Ahg907445 jgi|Araly1|907445|Al_scaffold_0002_526 497 8e-140
Ahg315311 jgi|Araly1|315311|fgenesh1_pm.C_scaffold_2000344 289 6e-77
Ahg338356 jgi|Araly1|338356|fgenesh1_pg.C_scaffold_2000455 287 2e-76
Ahg491999 jgi|Araly1|491999|fgenesh2_kg.7__1432__AT4G27830.1 100 3e-20
> Ahg314159 jgi|Araly1|314159|fgenesh1_pm.C_scaffold_1002939
Length=1458
Score = 1319 bits (714), Expect = 0.0
Identities = 826/881 (94%), Gaps = 4/881 (0%)
Strand=Plus/Plus
Query 245 GTAAAATGGATAATGGAGACATAGCTTGTGATGGATATCACAAGTATAAGGAAGATGTGC 304
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 209 GTAAGATGGATAATGGAGACATAGCTTGTGATGGATATCACAAGTACAAGGAAGATGTGC 268
Query 305 AGCTCATGGCCGAAACTGGCTTACATACATTCAGATTCTCCATCTCTTGGTCTAGACTCA 364
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 269 AGCTCATGGCCGAAACTGGCTTACATGCATTCAGATTCTCCATCTCTTGGTCTAGACTTA 328
Query 365 TC-TCTAATGGAAGAGGTTCCATTAACCCGAAAGGTCTACAGTTCTACAAGAATTTCATT 423
| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 329 -CATCTAATGGAAGAGGTTCCATTAACCCGAAAGGTCTACAGTTCTACAAGAACTTCATT 387
Query 424 CAAGAACTTGTCAAACATGGAATTGAGCCACATGTTACACTACATCACTACGATTTTCCT 483
||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||
Sbjct 388 CAAGAACTTGTCAAACATGGAATTGAGCCACATGTTACACTCCATCACTATGATCATCCT 447
Query 484 CAATATCTCGAGGATGACTATGGAGGCTGGACCAACCGCAAAATCATCAAAGACTTTACC 543
|| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 448 CAGTATCTCGAGGATGACTATGGAGGCTGGATCAACCGCAAAATCATCGAAGACTTTACA 507
Query 544 GCTTATGCAGATGTTTGCTTTAGAGAGTTTGGGAACCACGTCAAATTCTGGACCACGATC 603
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 508 GCTTATGCAGATGTTTGCTTCAGAGAGTTTGGGAACCACGTCAAATTCTGGACCACGATT 567
Query 604 AACGAGGCTAATATATTTACTATTGGAGGTTACAACGATGGGAATTCACCGCCTGGTCGT 663
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 AACGAGGCTAATATATTCACTATTGGAGGTTACAACGATGGGAATTCACCGCCTGGTCGT 627
Query 664 TGCTCCTTTCCGGGCAGAAACTGCACGTTAGGGAACTCTTCCACTGAAACATATATCGTA 723
||||||||||| ||||||| |||| |||||||||||||||||| |||||||||||||||
Sbjct 628 TGCTCCTTTCCAGGCAGAAGCTGCTTGTTAGGGAACTCTTCCACGGAAACATATATCGTA 687
Query 724 GGCCATAACTTGCTGCTTGCTCACGCCTCTGTTTCAAGACTATATAAGCAAAAGTACAAG 783
|| ||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 688 GGTCATAATTTGTTGCTTGCGCACGCCTCTGTTTCAAGACTATATAAGCAAAAGTACAAG 747
Query 784 GATATACAAGGAGGTTCTGTTGGATTTAGTTTATTTGCAATGAATTTTACTCCTTCTACA 843
||||||||||||||||| | || |||||||||||| ||||| |||||||||||||||||
Sbjct 748 GATATACAAGGAGGTTCCATAGGCTTTAGTTTATTTTCAATGTATTTTACTCCTTCTACA 807
Query 844 AACTCCAAGGATGATGAAATCGCAACGAAAAGAGCCAACGATTTCTACCTCGGATGGATG 903
| ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 808 AGCTCCAAGGATGATGAAATCGCAACGCAAAGAGCCAACGATTTCTACCTGGGATGGATG 867
Query 904 CTTGAGCCTCTTATATATGGAGACTATCCTGATGTGATGA-AAAGAACCATTGGATCAAG 962
||||||||||||||||||||| ||||||| |||| ||||| ||| ||||||||| |||||
Sbjct 868 CTTGAGCCTCTTATATATGGACACTATCCCGATGCGATGAGAAA-AACCATTGGGTCAAG 926
Query 963 ACTGCCAGTTTTCTCGAAGGAAGAATCAGAACAAGTGAAAGGCTCATCTGACTTCATAGG 1022
|||||| ||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 927 ACTGCCCGTTTTCTCGGAGGAAGAATCAGAACAAGTTAAAGGCTCATCTGACTTCATAGG 986
Query 1023 AGTCATTCACTATCTCACGGCTTTGGTCACAAACATCGATATCAACCCTTCACTTTCAGG 1082
||||||||||||| | ||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 987 AGTCATTCACTATGTTACGGCTTCAGTCAAAAACATCGATATCAACCCTTCTCTTTCAGG 1046
Query 1083 AATTCCAGATTTTAACTCAGACATGGGTGAATCTATTAATA 1123
||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1047 AATCCCAGATTTTAACTCTGACATGGGCCAATCTATTAATA 1087
Score = 553 bits (299), Expect = 2e-156
Identities = 348/372 (94%), Gaps = 1/372 (0%)
Strand=Plus/Plus
Query 1198 AGCATCCTAGAGTATATAAAGCAGAGCTATGGCAATCCTCCAGTCTACATTCTTGAGAAT 1257
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1087 AGCATCCTAGAGTATATAAAGCAGAGCTATAGCAATCCTCCTGTCTACATTCTTGAGAAT 1146
Query 1258 GGTAAAACAATGAACCAAGATTTGGAGCTGCAACAAAAGGACACACCAAGGATTGAGTAC 1317
||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1147 GGTAAAACAATGACCCAAGATTTGGATCTGCAACAAAAGGACACACCAAGGATTGAGTAC 1206
Query 1318 TTAGATGCTTACATTGGTGCGGTGCTCAAAGCTGTTAGGAATGGATCAGACACGAGAGGC 1377
|| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||
Sbjct 1207 TTGGATGCTTACATTGGTGCAGTGCTCAAAGCCGTTAGGAATGGATCAGATACGAGAGGC 1266
Query 1378 TACTTCGTATGGTCATTTATGGATTTGTACGAATTACTAAACGGATACAAGAGTAGTTTT 1437
||||| |||||||||||||||||||||||||| ||||| ||||||||||||||| ||||
Sbjct 1267 TACTTTGTATGGTCATTTATGGATTTGTACGAGTTACTGGACGGATACAAGAGTACTTTT 1326
Query 1438 GGATTGTACTCTGTCAATTTCAGTGATCCCCATCGCAAGAGATCTCCCAAACTCTCTGCT 1497
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1327 GGATTGTACTCTGTCAATTTCAGCGATCCCCATCTCAAGAGATCTCCCAAACTCTCTGCT 1386
Query 1498 CACTGGTACTCTGGTTTTCTCAAGGGCAAACC-CACATTTCTTGGTTCCCAAGGCATCAC 1556
|| ||||||||||||||||||||||| ||| ||| ||||||| |||||||||||| ||
Sbjct 1387 CATTGGTACTCTGGTTTTCTCAAGGGAAAAAAACACCTTTCTTGCTTCCCAAGGCATAAC 1446
Query 1557 ACAATTGCATAG 1568
|||||||||||
Sbjct 1447 GCAATTGCATAG 1458
Score = 276 bits (149), Expect = 4e-73
Identities = 192/212 (91%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGATG-TTTTGAC-TCTCATTACCATGATTGTGTTGCTTCTTCTAGCTT-TCCAT 57
|||||||| | ||||| | || |||||||||||||||||||||||||||||||| | | |
Sbjct 1 ATGGAAGA-GTTTTTGTCTTC-CATTACCATGATTGTGTTGCTTCTTCTAGCTTCTTC-T 57
Query 58 GGATTTGGAAAATGCAGTAGCGATCTTTACAGCAGGAGCGATTTCCCGGAAGGCTTCGTT 117
|||||||||||||||| |||||| |||||||||||||||||||||||||||| |||| |
Sbjct 58 CGATTTGGAAAATGCAGCAGCGATGTTTACAGCAGGAGCGATTTCCCGGAAGGTTTCGCT 117
Query 118 TTCGGAGCCGGGATATCTGCTTATCAGTGGGAAGGAGCTGTTGATGAAGATGGGAGGAAA 177
|||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 118 TTCGGAGCCGGGATATCTGCTTATCAGTGGGAAGGAGCCGTTGATGAAGACGGAAGGAAG 177
Query 178 CCTAGCGTCTGGGATACTTTCCTTCACTGTCG 209
|||||||| |||||||| |||||||||| |||
Sbjct 178 CCTAGCGTTTGGGATACCTTCCTTCACTCTCG 209
> Ahg326101 jgi|Araly1|326101|fgenesh1_pm.C_scaffold_6001321
Length=1512
Score = 830 bits (449), Expect = 0.0
Identities = 742/878 (85%), Gaps = 41/878 (5%)
Strand=Plus/Plus
Query 255 TAATGGAGACATAGCTTGTGATGGATATCACAAGTATAAGGAAGATGTGCAGCTCATGGC 314
||| |||||||||||||||||||| || ||||| || |||||||||||| | || ||||
Sbjct 204 TAACGGAGACATAGCTTGTGATGGGTACCACAAATACAAGGAAGATGTGAAACTAATGGT 263
Query 315 CGAAACTGGCTTACATACATTCAGATTCTCCATCTCTTGGTCTAGACTCAT-CTCTAATG 373
|||||||||||| || ||||||| ||||| |||||||||||||| || || | | ||||
Sbjct 264 GGAAACTGGCTTAGATGCATTCAGGTTCTCTATCTCTTGGTCTAGGCTTATAC-CAAATG 322
Query 374 GAAGAGGTTCC-ATTAACCCGAAAGGTCTACAGTTCTACAAGAATTTCATTCAAGAACTT 432
||||||| ||| ||||||| ||||||||||| ||||||||||| ||||||||| |||||
Sbjct 323 GAAGAGG-TCCTGTTAACCCAAAAGGTCTACAATTCTACAAGAACTTCATTCAACAACTT 381
Query 433 GTCA-AACATGGAATTGAGCCACATGTTACACTACATCACTACGATTTTCCTCAATATCT 491
|||| | ||||||| || |||||||||||| | || ||||||||| ||||||| |||||
Sbjct 382 GTCAGTA-ATGGAATCGAACCACATGTTACATTGCACCACTACGATCTTCCTCAGTATCT 440
Query 492 CGAGGATGACTATGGAGGCTGGACCAACCGCAAAATCATCAAAGACTTTACCGCTTATGC 551
|||||||||||||||||| |||| |||||||| |||||||||||||||||| ||||||||
Sbjct 441 CGAGGATGACTATGGAGGATGGATCAACCGCAGAATCATCAAAGACTTTACAGCTTATGC 500
Query 552 AGATGTTTGCTTT-AGAGAGTTTGGGAACCACGTCAAATTCTGGACCACGATCAACGAGG 610
||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AGATGTTTG-TTTCGGAGAGTTTGGGAACCACGTCAAATTCTGGACCACGATCAACGAGG 559
Query 611 CTAATATATTTACTATTGGAGGTTACAACGATGGGAATTCACCGCCTGGTCGTTGCTCCT 670
||||| |||| ||||| ||||||||||||||||||| |||||||||||||||||| || |
Sbjct 560 CTAATGTATTCACTATCGGAGGTTACAACGATGGGACTTCACCGCCTGGTCGTTGTTC-T 618
Query 671 TTCCGGGCAGAAACTGCACGTTAGGGAACTCTTCCACTGAAACATATATCGTAGGCCATA 730
| | |||| | | ||||||||| |||||||||||||| || ||||||||||
Sbjct 619 --------A-A--CTGCTCATCAGGGAACTCGTCCACTGAAACATACATTGTAGGCCATA 667
Query 731 ACTTGCTGCTTGCTCACGCCTCTGTTTCAAGACTATATAAGCAAAAGTACAAGGATATA- 789
||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||| |
Sbjct 668 ACTTGCTTCTTGCACACGCCTCTGTTTCAAGACTGTATAAGCAAAAGTACAAGGATA-AG 726
Query 790 CAAGGAGGTTCTGTTGGATTTAGTTTATTTGCAAT-GAATTT-TACTCCTTCTACAAACT 847
|||||||||||||| || | ||| |||| |||| | |||||| | ||||| ||||| ||
Sbjct 727 CAAGGAGGTTCTGTAGGCTCTAGCTTATATGCATTTGAATTTGT--TCCTTATACAAGCT 784
Query 848 CC---AAGGATGATGAAATCGCAACGAAAAGAGCCAACGATTTCTACCT-CGGATGGATG 903
|| |||||||||||||| |||| |||||||||| ||||||| | | ||| |||||
Sbjct 785 CCTCTAAGGATGATGAAATTGCAATTCAAAGAGCCAAAGATTTCTTC-TACGGCTGGATA 843
Query 904 CTTGAGCCTCTTATATATGGAGACTATCCTGATGTGATGAAAAGAACCATTGGATCAAGA 963
|||| |||||||| || |||||||||||| | || ||||||||| | | |||||||||
Sbjct 844 CTTGGGCCTCTTACATTTGGAGACTATCCCGTTGAAATGAAAAGAGCTGTGGGATCAAGA 903
Query 964 CTGCCAGTTTTCTCGAAGGAAGAATCAGAACAAGTGAAAGGCTCATCTGACTTCATAGG- 1022
|||||| ||||||| ||||||||||| |||| ||| |||||||| ||||||||||||||
Sbjct 904 CTGCCAATTTTCTCAAAGGAAGAATCTGAACTAGTTAAAGGCTCGTCTGACTTCATAGGG 963
Query 1023 AGTCATTCACTATCT-CACGGCTT-TGGTCACAAACATCGATATC-AACCCTTCACTTTC 1079
| |||| |||||| | | | |||| || ||| ||||||| | ||| |||| ||| |||||
Sbjct 964 A-TCATGCACTATTTTC-CAGCTTCTG-TCAAAAACATCAAAATCGAACC-TTCTCTTTC 1019
Query 1080 AGGAATTCCAGATTT-TAACTCAGACATGGGTGAATCT 1116
| ||| || ||||| || |||||||||||| | ||||
Sbjct 1020 AAGAAACCCGGATTTCTA-CTCAGACATGGGGGTATCT 1056
Score = 497 bits (269), Expect = 8e-140
Identities = 348/386 (90%), Gaps = 6/386 (2%)
Strand=Plus/Plus
Query 1202 TCCTAGAGTATATAAAGCAGAGCTATGGCAATCCTCCAGTCTACATTCTTGAGAATGGTA 1261
|||| || ||||| ||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 1121 TCCTGGAATATATTAAGCAGACCTATGGCAATCCTCCTGTCTACATTCTTGAGAATGGTA 1180
Query 1262 AAACAATGAA-CCAAGATTTGGAGCTGCAACAAAAGGACACACCAAGGATTGAGTACTTA 1320
| | ||||| || ||| ||| |||||||||| |||||||||| ||||||||||||||
Sbjct 1181 CACCTATGAAGCC-AGACTTGCAGCTGCAACAGAAGGACACACGTAGGATTGAGTACTT- 1238
Query 1321 G-ATGCTTACATTGGTGCGGTGCTCAAAGCTGTTAGGAATGGATCAGACACGAGAGGCTA 1379
| ||||||||||||||| || |||||||| |||||||||||||| ||||||||||||||
Sbjct 1239 GCGTGCTTACATTGGTGCTGTACTCAAAGCCGTTAGGAATGGATCGGACACGAGAGGCTA 1298
Query 1380 CTTCGTATGGTCATTTATGGATTTGTACGAATTACTAAACGGATACAAGAGTAGTTTTGG 1439
|||||||||||||||||||||||||||||| ||||||| |||||| || |||||||||
Sbjct 1299 CTTCGTATGGTCATTTATGGATTTGTACGAGTTACTAAGTGGATACGAGCTTAGTTTTGG 1358
Query 1440 ATTGTACTCTGTCAATTTCAGTGATCCCCATCGCAAGAGATCTCCCAAACTCTCTGCTCA 1499
||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1359 ATTATACTCTGTAAATTTCAGTGATCCTCATCGAAAGAGATCTCCCAAACTCTCTGCTCA 1418
Query 1500 CTGGTACTCTGGTTTTCTCAAGGGCAAACCCACATTTCTTGGTTCCCAAGGCATCACACA 1559
||||||||||| ||||||||| ||||||||||| ||| ||||||||||||||||||||||
Sbjct 1419 CTGGTACTCTGATTTTCTCAAAGGCAAACCCACTTTTTTTGGTTCCCAAGGCATCACACA 1478
Query 1560 ATTGCATAGCAAC-TTCTCTTCTTCC 1584
||||||||| ||| ||||||||||||
Sbjct 1479 ATTGCATAG-AACCTTCTCTTCTTCC 1503
Score = 143 bits (77), Expect = 5e-33
Identities = 118/137 (86%), Gaps = 6/137 (4%)
Strand=Plus/Plus
Query 76 AGCGATCTTTACAGCAGGAGCGATTTCCCGGAAGGCTTC-GTTTTCGGAGCCGGGA-TAT 133
|||||| |||| || ||||| |||||||| ||||||||| |||| ||| | | | | |
Sbjct 61 AGCGATGTTTATAGTAGGAGTGATTTCCCCGAAGGCTTCACTTTT-GGATCTGCCACT-T 118
Query 134 CTGCTTATCAGTGGGAAGGAGCTGTTGATGAAGATGGGAGGAAA-CCTAGCGTCTGGGAT 192
||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 119 CTGCTTATCAGTGGGAAGGAGCTGTTGATGAAGATGGGAA-AAAGCCTAGCGTTTGGGAT 177
Query 193 ACTTTCCTTCACTGTCG 209
||||||||||||| |||
Sbjct 178 ACTTTCCTTCACTCTCG 194
> Ahg492664 jgi|Araly1|492664|fgenesh2_kg.7__2097__AT4G22100.1
Length=1506
Score = 773 bits (418), Expect = 0.0
Identities = 733/879 (83%), Gaps = 45/879 (5%)
Strand=Plus/Plus
Query 255 TAATGGAGACATAGCT-TGTGATGGATATCACAAGTATAAGGAAGATGTGCAGCTCATGG 313
||| ||||||||| | |||||||| || || ||| | | ||||||||||| ||||||
Sbjct 195 TAACGGAGACATA-ATATGTGATGGGTACCATAAG--T-A-CAAGATGTGCAGATCATGG 249
Query 314 CCGAAACTGGCTTACATACATTCAGATTCTCCATCTCTTGGTCTAGACTCATCTCTA-AT 372
|||||||||| | || | |||||||||||||| |||| |||||| || || | | |
Sbjct 250 TGGAAACTGGCTGAGATGCCTTCAGATTCTCCATTTCTTCGTCTAGGCTTAT-AC-AGA- 306
Query 373 GGAAG--AGGTTCC-ATTAA-CCCGAAAGGTCTACAGTTCTACAAGAATTTCATTCAAGA 428
| ||| ||| ||| ||||| ||| || |||||||||||||| ||||| |||||||||||
Sbjct 307 GTAAGAAAGG-TCCTATTAATCCC-AAGGGTCTACAGTTCTATAAGAACTTCATTCAAGA 364
Query 429 ACTTGTCAAACATGGAATTGAGCCACATGTTACACTACAT-CACTACGATTTTCCTCAAT 487
|| | | |||||| |||||||||||||| | ||||||||| |||||| |
Sbjct 365 AC---T----C----AATTGAACCACATGTTACACT-GTTCCACTACGATCATCCTCAGT 412
Query 488 ATCTCGAGGATGACTATGGAGGCTGGACCAACCGCAAAATCATCAAAGACTTTACCGCTT 547
|||| || |||||||||||||| | || ||||||| ||||||| |||||||||| ||||
Sbjct 413 ATCTTGAAGATGACTATGGAGGATCGATTAACCGCAGAATCATCCAAGACTTTACTGCTT 472
Query 548 ATGCAGATGTTTGCTTTAGAGAGTTTGGGAACCACGTCAAATTCTGGACCACGATCAACG 607
|||| ||||||||||| |||||||||||| | ||||||||||||||||| ||||||||||
Sbjct 473 ATGCGGATGTTTGCTTCAGAGAGTTTGGGCATCACGTCAAATTCTGGACAACGATCAACG 532
Query 608 AGGCTAATATATTTACTATTGGAGGTTACAACGATGGGAAT-TCACCGCCTGGTCGTTGC 666
|||| |||||||| ||||||||||| ||||| |||||| || ||||||| |||||||||
Sbjct 533 AGGCGAATATATTCACTATTGGAGGATACAATGATGGG-ATCACACCGCCAGGTCGTTGC 591
Query 667 TCCTTTCCGGGCAGAAACTGCACGTTAGGGAACTCTTCCACTGAAACATATATCGTAGGC 726
|||| ||||| ||||||||| | | |||||||||||| |||||| ||||||||||||||
Sbjct 592 TCCTCACCGGGTAGAAACTGCTCATCAGGGAACTCTTCAACTGAACCATATATCGTAGGC 651
Query 727 CATAACTTGCTGCTTGCTCACGCCTCTGTTTCAAGACTATATAAGCAAAAGTACAAGGAT 786
||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||
Sbjct 652 CATAACTTGCTGCTTGCGCACGCCTCTGCTTCAAGACTGTATAAGCAAAAGTACAAGGAT 711
Query 787 ATACAAGGAGGTTCTGTTGGATTTAGTTTATTTGCAAT-GAATTTTACTCCTTCTACAAA 845
|| |||||||||||| | || || || |||||||| | | ||| || |||||||| |
Sbjct 712 ATGCAAGGAGGTTCTATAGGCTTAAGCTTATTTGCTCTAGGGTTT-ACACCTTCTACGAG 770
Query 846 CTCCAAGGATGATGAAATCGCAA-CGAAAAGAGCCAACGATTTCTACCTC-GGATGGATG 903
||||||||||||||| || |||| | ||| ||||||| ||||||||| || || ||||||
Sbjct 771 CTCCAAGGATGATGACATTGCAATCCAAA-GAGCCAAAGATTTCTAC-TCCGGTTGGATG 828
Query 904 CTTGAGCCTCTTATATAT-GGAGACTATCCTGATGTGATGAAAAGAACCATTGGATCAAG 962
|||||||||||||||| | ||||||||||| |||| |||||||||| ||||||||||
Sbjct 829 CTTGAGCCTCTTATAT-TCGGAGACTATCCCGATGAAATGAAAAGAATTGTTGGATCAAG 887
Query 963 ACTGCCAGTTTTCTCGAAGGAAGAATCAGAACAAGTGAAAGGCTCATCTGACTTCATAGG 1022
|||||| ||||||| |||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 888 GCTGCCAATTTTCTCAAAGGAAGAATCAGAACAAGTTAAAGGCTCATCTGATTTCGTAGG 947
Query 1023 AGTCATTCACTATCTCACGGCTTTGGTCACAAACATCGATATCA-ACCCTTC-ACTTTCA 1080
| ||||||||||||| | |||| ||||||||||||| | |||| ||| ||| | |||||
Sbjct 948 AATCATTCACTATCTTGCAGCTTCGGTCACAAACATCAAAATCAGACC-TTCTA-TTTCA 1005
Query 1081 GGAATTCCAGA-TTTTAACTCAGACATGGGTGAATCTAT 1118
|||| || || |||| | ||||||||||||| ||||||
Sbjct 1006 GGAAACCC-GAATTTTTATTCAGACATGGGTGTATCTAT 1043
Score = 496 bits (268), Expect = 3e-139
Identities = 346/384 (90%), Gaps = 4/384 (1%)
Strand=Plus/Plus
Query 1202 TCCTAGAGTATATAAAGCAGAGCTATGGCAATCCTCC-AGTCTACATTCTTGAGAATGGT 1260
|||| ||||||||||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct 1112 TCCTTGAGTATATAAAGCAGAGCTATGGCAATCCACCTA-TCTACATTCTTGAGAATGGT 1170
Query 1261 AAAACAATGAACCAAGATTTGGAGCTGCAACAAAAGGACACACCAAGGATTGAGTACTTA 1320
| | | ||||| ||||||||| |||| ||||| ||||||||||||||| |||||||||||
Sbjct 1171 ACACCGATGAAGCAAGATTTGCAGCTACAACAGAAGGACACACCAAGGGTTGAGTACTTA 1230
Query 1321 GATGCTTACATTGGTGCGGTGCTCAAAGCTGTTAGGAATGGATCAGACACGAGAGGCTAC 1380
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1231 CATGCTTACATTGGTGCTGTGCTCAAAGCCGTTAGGAATGGATCAGACACGAGAGGTTAC 1290
Query 1381 TTCGTATGGTCATTTATGGATTTGTACGAATTACTAAACGGATACAAGAGTAGTTTTGGA 1440
||||||||||||||||||||||| ||||| ||| | || |||||| || ||||||||||
Sbjct 1291 TTCGTATGGTCATTTATGGATTTATACGAGTTAGTGAAGGGATACGAGTTTAGTTTTGGA 1350
Query 1441 TTGTACTCTGTCAATTTCAGTGATCCCCATCGCAAGAGATCTCCCAAACTCTCTGCTCAC 1500
|| |||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1351 TTATACTCTGTGAATTTCAGTGATCCTCATCGTAAGAGATCTCCCAAACTCTCTGCTCAT 1410
Query 1501 TGGTACTCTGGTTTTCTCAAGGGCAA-ACCCACATTTCTTGGTTCCCAAGGCATCACACA 1559
|||||||||| ||||||||| ||||| | | || ||||||||||| ||||||||||| ||
Sbjct 1411 TGGTACTCTGCTTTTCTCAAAGGCAACAAC-ACTTTTCTTGGTTCTCAAGGCATCACGCA 1469
Query 1560 ATTGCATAGCAACTTCTCTTCTTC 1583
|||||| |||||||||||||||||
Sbjct 1470 ATTGCAGAGCAACTTCTCTTCTTC 1493
Score = 134 bits (72), Expect = 3e-30
Identities = 101/115 (88%), Gaps = 2/115 (2%)
Strand=Plus/Plus
Query 96 CGATTTCCCGGAAGGCTTCGTTTTCGGAGCCGGGA-TATCTGCTTATCAGTGGGAAGGAG 154
||| ||||| || |||||| ||||||| ||| | | ||||||||||||||||||||||
Sbjct 72 CGACTTCCCCGAGGGCTTCACTTTCGGATCCGCCACT-TCTGCTTATCAGTGGGAAGGAG 130
Query 155 CTGTTGATGAAGATGGGAGGAAACCTAGCGTCTGGGATACTTTCCTTCACTGTCG 209
|| ||||||||||| |||| ||||||||||||||||||||||||||||||| |||
Sbjct 131 CTTTTGATGAAGATAGGAGAAAACCTAGCGTCTGGGATACTTTCCTTCACTCTCG 185
> Ahg315321 jgi|Araly1|315321|fgenesh1_pm.C_scaffold_2000354
Length=1539
Score = 529 bits (286), Expect = 3e-149
Identities = 588/727 (81%), Gaps = 47/727 (6%)
Strand=Plus/Plus
Query 255 TAATGGAGACATAGCTTGTGATGGATATCACAAGTATAAGGAAGATGTGCAGCTCATGGC 314
||| ||||| ||| | |||||||| ||||||||||| |||||||||||| || | ||||
Sbjct 204 TAACGGAGATATAACATGTGATGGGTATCACAAGTACAAGGAAGATGTGAAGTTGATGGT 263
Query 315 CGAAACTGGCTTACATACATTCAGATTCTCCATCTCTTGGTCTAGACTCAT-CTCTAATG 373
|| ||| |||| || | || ||||||||||||||||||||||| || || | || | |
Sbjct 264 GGACACTAACTTAGATGCGTTTAGATTCTCCATCTCTTGGTCTAGGCTAATAC-CT-A-G 320
Query 374 GAAGAGGTTCCATTAACCCGAAAGGTCTACAGTTCTACAAGAATT--TCATTCAAG--AA 429
|| | || || || | || || || ||| ||||||| | | || | ||
Sbjct 321 TAA-A-ATT---TT-ACAAG-AA--CCT-CA--TCT--AAGAATTAGTAACGCATGTAAA 366
Query 430 CTTGTCAAACATGGAATTGAGCCACATGTTACACTACATCACTACGATTTTCCTCAATAT 489
||| | ||| |||| ||| ||| ||||||||||| | ||||||||| |||||| |||
Sbjct 367 CTT-AC-TACA-GGAAATGAACCATATGTTACACTATACCACTACGATCATCCTCAGTAT 423
Query 490 CTCGAGGATGACTATGGAGGCTGGAC-CAACCGCAAAATCATCAAAGACTTTACCGCTTA 548
|| |||||||| |||||||| ||| | ||||||| ||| |||||||||||||| |||||
Sbjct 424 CTTGAGGATGAATATGGAGGATGG-CTCAACCGCCGAATGATCAAAGACTTTACTGCTTA 482
Query 549 TGCAGATGTTTGCTTTAGAGAGTTTGGGAACCACGTCAAATTCTGGACCACGATCAACGA 608
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 483 TGCAGATGTTTGCTTTAGAGAGTTTGGAAACCACGTCAAATTCTGGACAACGATCAACGA 542
Query 609 GGCTAATATATT-TACTATTGGAGGTTACAACGATGGGAATT-CACCGCCTGGTCGTTGC 666
||||||| |||| | ||||||||||||||| ||||||| | ||||||||||||||||
Sbjct 543 GGCTAATGTATTCT-CTATTGGAGGTTACACCGATGGGC-TGACACCGCCTGGTCGTTGT 600
Query 667 TCCTTT-CCGGGCAGAAACTGCACGTTAGGGAACTCTTCCACTGAAACA-TATATCGTAG 724
|| | | || |||||||||||| || |||||||||||||| |||| || ||||| ||||
Sbjct 601 TC-TATACCAGGCAGAAACTGCGTGTCAGGGAACTCTTCCATTGAA-CAATATATTGTAG 658
Query 725 GCCATAACTTGCTGCTTGCTCACGCCTCTGTTTCAAGACTATATAAGCAAAAGTACAAGG 784
||||||| ||||||||||| |||||||||| ||||||| |||| ||||||||||||||||
Sbjct 659 GCCATAATTTGCTGCTTGCACACGCCTCTGCTTCAAGAATATACAAGCAAAAGTACAAGG 718
Query 785 ATATACAAGGAGGTT-CTGTTGGATTTAG-TT-TATTTGCAATGAATTTTACTCCTTCTA 841
|||| || ||||||| | || || || || || ||||| | | || | ||||||||
Sbjct 719 ATATGCAGGGAGGTTTC-GTAGGCTTAAGCTTATATTTTTTAGGGCTTAT--TCCTTCTA 775
Query 842 CAAACTCCAAGGATGATGAAATCGCAACGAAAAGAGCCAAC-GATTTCTAC-CTCGGATG 899
||| ||||||||||||| | || ||||| |||||||||| | ||||||| | ||| ||
Sbjct 776 CAAGCTCCAAGGATGATTACATTGCAACTCAAAGAGCCAAAAG-TTTCTACAC-CGGCTG 833
Query 900 GATGCTTGAG-CCTCTTATATATGGAGACTATCCTGATGTGATGAAAAGAACCATTGGAT 958
|||||||| | ||||||||||||||| ||||||| ||| |||||||||| | ||||||
Sbjct 834 GATGCTTG-GTCCTCTTATATATGGACACTATCCAGATACAATGAAAAGAATCGTTGGAT 892
Query 959 CAAGACT 965
|||||||
Sbjct 893 CAAGACT 899
Score = 351 bits (190), Expect = 7e-96
Identities = 284/329 (86%), Gaps = 7/329 (2%)
Strand=Plus/Plus
Query 1255 AAT-GGTAAAACAATGAACCAAGATTTGGAGCTGCAACAAAAGGACACACCAAGGATTGA 1313
||| |||| | | ||||| ||||||| | ||||| |||| ||||| ||||||||| | ||
Sbjct 1200 AATAGGTATACCGATGAAGCAAGATTCGCAGCTGAAACAGAAGGATACACCAAGGGTGGA 1259
Query 1314 GTACTTAGATGCTTACATTGGTGCG-GTGCTCAAAGCTGTTAGGAATGGATCAGACACGA 1372
|||||| ||||||||||||||| | ||||||||| | |||||||||||||||||||| |
Sbjct 1260 ATACTTACATGCTTACATTGGTG-GTGTGCTCAAATCCGTTAGGAATGGATCAGACACAA 1318
Query 1373 GAGGCTACTTCGTATGGTCATTTATGGATTTGTACGA-ATTACTAAACGGATACAAGAGT 1431
||||||||||| ||||||| ||| ||||||| ||||| ||| | |||||||||| |
Sbjct 1319 GAGGCTACTTCATATGGTCGTTTGTGGATTTATACGAGATT-TTCGGGGGATACAAGATT 1377
Query 1432 AGTTTTGGATTGTACTCTGTCAATTTCAGTGATCCCCATCGCAAGAGATCTCCCAAACTC 1491
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 1378 GGTTTTGGATTGTACTCTGTCAATTTCAGTGATCCTCATCTCAAGAGATCTCCCAAACTC 1437
Query 1492 TCTGCTCACTGGTACTCTGGTTTTCTCAAGGGCAAACCCA-CATTTCTTGGTTCCCAAGG 1550
|||||||| |||||||||| ||||||||| |||||| | | | |||||||||||||||||
Sbjct 1438 TCTGCTCATTGGTACTCTGATTTTCTCAATGGCAAAACTATC-TTTCTTGGTTCCCAAGG 1496
Query 1551 CATCACACAATTGCATAGCAACTTCTCTT 1579
|||||| ||||||| |||||||| ||||
Sbjct 1497 CATCACGGAATTGCAGAGCAACTTATCTT 1525
> Ahg907445 jgi|Araly1|907445|Al_scaffold_0002_526
Length=1095
Score = 497 bits (269), Expect = 8e-140
Identities = 439/519 (85%), Gaps = 19/519 (4%)
Strand=Plus/Plus
Query 281 ATCACAAGTATAAGGAAGATGTGCAGCTCATGGCCGAAACTGGCTTACATACATTCAGAT 340
||||||| || |||||||||||| || | |||| || ||| |||| || | |||||||
Sbjct 131 ATCACAAATACAAGGAAGATGTGAAGTTGATGGTGGACACTAACTTAGATGCGTTCAGAT 190
Query 341 TCTCCATCTCTTGGTCTAGACTCAT-CTCTAATGGAAGAGGTTCC-ATTAACCCGAAAGG 398
||||||| ||||||||||| || || | ||||| ||| ||| || |||||| ||| ||
Sbjct 191 TCTCCATGTCTTGGTCTAGGCTAATAC-CTAATAGAAAAGG-CCCTGTTAACCAGAAGGG 248
Query 399 TCTACAGTTCTACAAGAATTTCATTCAAGAACTT-GTCAAA-CATGGAATTGAGCCACAT 456
||| ||||||||||||||| |||| |||||| || || ||| ||||||||||| ||| ||
Sbjct 249 TCTTCAGTTCTACAAGAATCTCATCCAAGAA-TTAGT-AAACCATGGAATTGAACCATAT 306
Query 457 GTTACACTACATCACTACGATTTTCCTCAATATCTCGAGGATGACTATGGAGGCTGGAC- 515
|||||||| || |||| |||| |||||||||||| ||||| || |||||||| ||| |
Sbjct 307 GTTACACTGCACCACTTCGATCATCCTCAATATCTTGAGGACGAATATGGAGGATGG-CT 365
Query 516 CAACCGCAAAATCATCAAAGACTTTACCGCTTATGCAGATGTTTGCTTTAGAGAGTTTGG 575
||||| || ||| || |||||||||| |||||||||||||||||||| |||||||||||
Sbjct 366 CAACCACACGATCGTCGAAGACTTTACTGCTTATGCAGATGTTTGCTTCAGAGAGTTTGG 425
Query 576 GAACCACGTCAAATTCTGGACCACGATCAACGA-GGCTAATATATT-TACTATTGGAGGT 633
||||| |||||||||||||||||||||||||| ||| |||||||| | |||||||||||
Sbjct 426 AAACCATGTCAAATTCTGGACCACGATCAACGAGGGC-AATATATTCT-CTATTGGAGGT 483
Query 634 TACAACGA-TGGGAATTCACCGCCTGGTCGTTGCTCCTTTCC-GGGCAGAAACTGCACGT 691
|||||| | |||| ||||||||||||||||||| ||| || | || ||||||| |
Sbjct 484 TACAAC-ATTGGGGATTCACCGCCTGGTCGTTGTTCCAAACCAGACCA-AAACTGCTTAT 541
Query 692 TAGGGAACTCTTCCACTGAAACATATATCGTAGGCCATAACTTGCTGCTTGCTCACGCCT 751
||||||||||||||||||| ||||||| ||||||||||| ||| ||||||| |||||||
Sbjct 542 CAGGGAACTCTTCCACTGAACCATATATTGTAGGCCATAATTTGTTGCTTGCGCACGCCT 601
Query 752 CTGTTTCAAGACTATATAAGCAAAAGTACAAGG-ATATA 789
||||||||||||||||||||||||||||||||| |||||
Sbjct 602 CTGTTTCAAGACTATATAAGCAAAAGTACAAGGTATATA 640
Score = 121 bits (65), Expect = 2e-26
Identities = 109/129 (84%), Gaps = 7/129 (5%)
Strand=Plus/Plus
Query 1462 GATCCCCATCGCAAGAGATCTCCCAAACTCTCTGCTCACTGGTACTCTGGTTTTCTCAAG 1521
||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 937 GATCCTCATCGCAAGAGATCTCCCAAACTCTCTGCTCATTGGTACTCTGATTTTCTCAAA 996
Query 1522 GGCAAACCCACATT-TCTTGGTTCCCAAGGCATCACACAATTGCA--T-A--GCAACTTC 1575
|| ||| | | || ||||||||| ||||||||||| ||||||| | | | |||||
Sbjct 997 GGAAAAAGCGC-TTCTCTTGGTTCTCAAGGCATCACGGAATTGCAAATTAAAGTAACTTA 1055
Query 1576 TCTTCTTCC 1584
|||||||||
Sbjct 1056 TCTTCTTCC 1064
> Ahg315311 jgi|Araly1|315311|fgenesh1_pm.C_scaffold_2000344
Length=1365
Score = 289 bits (156), Expect = 6e-77
Identities = 317/390 (81%), Gaps = 29/390 (7%)
Strand=Plus/Plus
Query 1202 TCCTAGAGTATATAAAGCAGAGCTATGGCAATCCTCCAGTCTACATTCTTGAGAATGGTA 1261
|||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 992 TCCTGGAGTATATAAAGCAGAGCTATGACAATCCTCCTGTCTACATTCTTGAGAATGGT- 1050
Query 1262 AAACAATGAACCAAGATTTGGAGCTGCAACAAAAGGACACACCA-AGGATTG-AGTACTT 1319
|| ||| || | || | ||||| ||||| ||| || ||| || | ||| |
Sbjct 1051 --AC-----ACC--GA--T-GA-C-ACAACAGAAGGATACA-CATAGG-GTGAAATACAT 1094
Query 1320 AG-ATGCTTACATTGGTGCG-GTGCTCAAAGCTGTTAGGAATGGATCAGACACGAGAGGC 1377
| |||||||||| |||| | ||||||||| | || ||||||||||||||||||||||||
Sbjct 1095 -GCATGCTTACATAGGTG-GTGTGCTCAAATCCGTAAGGAATGGATCAGACACGAGAGGC 1152
Query 1378 TACTTCGTATGGTCATTTATGGATTTGTACGAA-TTACTAAA-CGGATACAAGAGTAGTT 1435
||||| |||||||||||||||||||| | ||| ||| || ||| || | || |||
Sbjct 1153 TACTTTGTATGGTCATTTATGGATTTATTCGAGCTTA-TAGGGCGG-TATGATTGTGGTT 1210
Query 1436 TTGGATTGTACTCTGTCAATTTCAGTGATCCCCATCGCAAGAGATCTCCCAAACTCTCTG 1495
||||||||||||||||||||| || ||||| ||||||||||||||||| | ||| ||||
Sbjct 1211 ATGGATTGTACTCTGTCAATTTTAGCGATCCTCATCGCAAGAGATCTCCTAGACTTTCTG 1270
Query 1496 CTCACTGGTACTCTGGTTTTCTCAAGGGCAAACCCACATTTCTTGGTTCCCAAGGCATCA 1555
|||| | |||||| | |||||||||||||||| || | |||| || ||||||||||||||
Sbjct 1271 CTCATTCGTACTCAGATTTTCTCAAGGGCAAAACCTCTTTTCATGATTCCCAAGGCATCA 1330
Query 1556 CACA-ATTGCATAGCAACTTCTCTTCTTCC 1584
| |||||| |||||||||||| |||||
Sbjct 1331 -AGGGATTGCAGAGCAACTTCTCTCCTTCC 1359
> Ahg338356 jgi|Araly1|338356|fgenesh1_pg.C_scaffold_2000455
Length=402
Score = 287 bits (155), Expect = 2e-76
Identities = 258/306 (84%), Gaps = 13/306 (4%)
Strand=Plus/Plus
Query 1255 AAT-GGTAAAACAATGAACCAAGATTTGGAGCTGCAACAAAAGGACACACCAAGGA-TTG 1312
||| |||| | | ||||| ||||| | | ||||| |||| ||||| ||||||| || | |
Sbjct 10 AATAGGTATACCGATGAAGCAAGAGTCGCAGCTGAAACAGAAGGATACACCAA-GAGTGG 68
Query 1313 AGTACTTAGATGCTTACATTGGTGCG-GTGCTCAAAGCTGTTAGGAATGGATCAGACACG 1371
| |||||| ||||||||||||||| | || |||||| | | ||||||||||| ||||||
Sbjct 69 AATACTTACATGCTTACATTGGTG-GTGTTCTCAAATCCATAAGGAATGGATCGGACACG 127
Query 1372 AGAGGCTACTTCGTATGGTCATTTATGGATTTGTACGA-ATTACTAAACGG-ATACAAGA 1429
|||||||||||||||||||||||||||||||| ||||| |||| || || |||| ||
Sbjct 128 AGAGGCTACTTCGTATGGTCATTTATGGATTTATACGAGATTA-TAGGGGGGATACGAG- 185
Query 1430 GTAG-TTTTGGATTGTACTCTGTCAATTTCAGTGATCCCCATCGCAAGAGATCTCCCAAA 1488
|| | |||||| |||||| ||||||||||||| ||||| ||||||| |||||||||||||
Sbjct 186 GTTGGTTTTGGGTTGTACGCTGTCAATTTCAGCGATCCTCATCGCAGGAGATCTCCCAAA 245
Query 1489 CTCTCTGCTCACTGGTACTCTGGTTTTCTCAAGGGCAA-ACCCACATTTCTTGGTTCC-C 1546
||||||||||| |||||||||| |||||||||||||| ||| | |||||||||||| |
Sbjct 246 CTCTCTGCTCATTGGTACTCTGATTTTCTCAAGGGCACTACCG-CGTTTCTTGGTTCCGC 304
Query 1547 AAGGCA 1552
||||||
Sbjct 305 AAGGCA 310
> Ahg491999 jgi|Araly1|491999|fgenesh2_kg.7__1432__AT4G27830.1
Length=1573
Score = 100 bits (54), Expect = 3e-20
Identities = 74/83 (89%), Gaps = 4/83 (5%)
Strand=Plus/Plus
Query 118 TTCGGAGCCGGGA-TATCTGCTTATCAGTGGGAAGGAGCTGTTGATGAAGATGGGAGGAA 176
|||||||||| | | ||||||||||||||||||||||||||||||||||| || || ||
Sbjct 111 TTCGGAGCCGCCACT-TCTGCTTATCAGTGGGAAGGAGCTGTTGATGAAGACGGAAG-AA 168
Query 177 A-CCTAGCGTCTGGGATACTTTC 198
|||||||||||||||||||||
Sbjct 169 CTCCTAGCGTCTGGGATACTTTC 191
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63305987190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5