BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45201.1
Length=1697
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473845 jgi|Araly1|473845|fgenesh2_kg.1__3799__AT1G45201.1 2577 0.0
> Ahg473845 jgi|Araly1|473845|fgenesh2_kg.1__3799__AT1G45201.1
Length=1650
Score = 2577 bits (1395), Expect = 0.0
Identities = 1571/1655 (95%), Gaps = 16/1655 (1%)
Strand=Plus/Plus
Query 14 TTCTCCTTTCTTCTTAT-TTCTGAGCAAAGTTTTTTCTTCCTTTCATATTGTGAGGATGT 72
|||| |||||||||||| || |||||||||||| |||||||||||||||||||| ||||
Sbjct 1 TTCTTCTTTCTTCTTATATT-TGAGCAAAGTTTGTTCTTCCTTTCATATTGTGAAAATGT 59
Query 73 CCAAAACCAATATGAAATTTTGCAATAGTTATTTTCTGGTCGATCCGACCAAAGCAAGTT 132
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CCCAAACCAATATGAAATTTTGCAATAGTTATTTTCTGGTCGATCCGACCAAAGCAAGTT 119
Query 133 TTCTTGATCTCCTTTTGCTTTTGTTTTCCTCCAACCTGACCAGTGCAAGATTCATCGATT 192
|||||||||||||| ||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 120 TTCTTGATCTCCTTCTGCTTTTGTTTTCCTTCAACCTGACCAGCGCAAGATTCATCGATT 179
Query 193 CTCCTCCGGATACGCTTAAAGGCTTCCGGAGAAGTTTCGCGAGTCGATGGATCCTTGCGT 252
||||||||||||| || ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 180 CTCCTCCGGATACACTCAAAAGCTTCCGGAGAAGTTTTGCGAGTCGATGGATCCTTGCGT 239
Query 253 TGGCCATCTTCCTTCAAAAAGTATTAATGCTCTTAAGTAAACCTTTTGCA-TTCATTGGT 311
||||||| || ||||||||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 240 TGGCCATATTGCTTCAAAAAGTATTAATGCTCTTGAGTAAACCTTTTGCATTTC-TTGGT 298
Query 312 CAAAAGCTCACATATTGGCTCAACCTTCTTACGGCAAATGGAGGCTTCTTCAACTTGATA 371
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CGTTTGCTCACATATTGGCTCAACCTTCTTACGGCAAATGGAGGCTTCTTCAACTTGATA 358
Query 372 CTTAACCTTATGTCAGGAAAGCTGGTCAAGCCTGACAAATCTTCGGCGACGTATACTTCT 431
||||||||| || ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 359 CTTAACCTTTTGACAGGAAAGCTGGTGAAGCCTGACAAATCTTCGGCGACATATACTTCG 418
Query 432 TTTATAGGATGCTCAGATCGACGAATAGAGCTTGACGAGAAGATAAATGTTGGTAGCATC 491
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTTATAGGATGCTCGGATCGACGAATAGAGCTTGACGAGAAGATAAATGTTGGTAGCATC 478
Query 492 GAATACAAATCGATGTTGTCAATAATGGCTTCTAAGATCTCTTATGAGAGCAAACCTTAC 551
|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 479 GAATACAAGTCGATGTTGTCAATAATGGCTTCTAAGATCGCTTATGAGAGCAAACCTTTC 538
Query 552 ATCACTTCCGTCGTCAAAAACACTTGGAAGATGGACTTGGTGGGTAACTACGACTTTTAC 611
||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 GTCAATTCCGTCGTCAAGAACACTTGGAAGATGGACTTGGTGGGTAACTACGACTTTTAC 598
Query 612 AACGCTTTCCAAGAAAGTAAATTGACGCAAGCCTTCGTGTTCAAGACTTCGAGCACCAAT 671
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AACGCTTTCCAAGAAAGTAAATTGACGCAAGCCTTCGTGTTCAAGACTTCGAGCACCAAT 658
Query 672 CCAGACCTCATCGTCGTTAGCTTCAGAGGAACCGAACCTTTCGAGGCTGCCGATTGGTGC 731
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 659 CCAGACCTCATCGTCGTTAGCTTCAGAGGAACCGAACCTTTCGAAGCTGCCGATTGGTGC 718
Query 732 ACTGATCTCGACCTCTCTTGGTACGAGATGAAGAACGTTGGCAAAGTCCACGCCGGGTTC 791
||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 719 ACTGATCTCGACCTCTCTTGGTACGAGTTGAAGAACGTTGGCAAAGTCCACGCTGGGTTC 778
Query 792 TCAAGAGCTTTAGGTCTCCAAAAAGATGGA---TGGCCCAAGGAAAATATTAGTCTACTA 848
|||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 779 TCAAGAGCTTTAGGCCTCCAAAAAGATGGAGGATGGCCCAAGGAAAATATAAGTCTTCTA 838
Query 849 CACCAATATGCTTACTACACCATCAGACAGATGCTTAGAGACAAGCTTGGCAGAAACAAG 908
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 839 CACCAATATGCTTACTACACCATCAGACAGATGCTTAGGGACAAGCTTGCCAGAAACAAG 898
Query 909 AACCTTAAATATATTCTAACAGGTCACAGCCTTGGCGGAGCACTAGCTGCTCTTTTCCCG 968
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 899 AACCTTAAGTATATTCTAACAGGTCACAGCCTTGGCGGAGCACTAGCTGCTCTTTTTCCG 958
Query 969 GCGATTCTGGCCATTCACGGTGAGGATGAGCTGCTAGATAAGCTAGAGGGAATCTATACG 1028
|||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GCGATTCTAGCGATTCATGGTGAGGATGAGCTGCTAGATAAGCTAGAGGGAATCTATACG 1018
Query 1029 TTTGGACAGCCACGTGTAGGAGATGAGGACTTTGGTGAGTTTATGAAGGGTGTGGTGAAA 1088
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 1019 TTTGGACAACCACGTGTAGGGGATGAGGATTTTGGTGAGTTTATGAAGGGTGTGGTGAAA 1078
Query 1089 AAGCATGGAATAGAGTATGAGAGATTCGTCTATAACAATGATGTTGTGCCTAGAGTGCCC 1148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 AAGCATGGAATAGAGTATGAGAGATTCGTCTATAACAATGATGTTGTGCCTAGAGTGCCT 1138
Query 1149 TTTGATGACAAGT-ACTTATTCTCATACAAGCACTATGGACCTTGCAATTCCTTCAACAG 1207
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TTTGATGACAAGTTA-TTATTCTCATACAAGCACTATGGACCTTGCAATTCCTTCAACAG 1197
Query 1208 TCTCTACAAAGGAAAGGTAAGAGAAGATGCACCAAATGCGAACTACTTCAACTTGTTGTG 1267
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1198 TCTCTACAAAGGAAAGGTAAGAGAAGATGCACCAAATGCAAACTACTTCAACTTGTTGTG 1257
Query 1268 GTTAATACCGCAGCTGTTGACTGGTTTGTGGGAGTTTATAAGGAGTTTCATATTACAGTT 1327
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1258 GTTAATACCGCAGCTATTGACTGGTTTGTGGGAGTTTATAAGAAGTTTCATATTACAGTT 1317
Query 1328 TTGGAAAGGCGACGAGTACAAAGAGAATTGGTTAATGAGATTTGTTAGGGTTGTGGGAAT 1387
|||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1318 TTGGAAAGGCGAAGATTACAAAGAGAATTGGTTGATGAGATTTGTTAGGGTTGTGGGAAT 1377
Query 1388 AGTGTTCCCTGGTGGCTCTAACCATTTCCCATTTGATTACGTCAACTCTACTCGCCTAGG 1447
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1378 AGTGTTCCCTGGTGGCTCTAACCATTTCCCATTTGATTACGTCAATTCTACGCGCCTAGG 1437
Query 1448 AGGCTTGGTTCGACCTCCTCCTACTACTACTCCTGAGGATAAACTTGCCCTCATTGCTTG 1507
||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1438 AGGCTTGGTTCGACCTCCTCCTAGTACTACTCCTGAAGATAAACTTGCCCTCATTGCTTG 1497
Query 1508 AACTCTCATTATTTAATAATCATATCCACTTTATCTGCCCTAATGACGGTTAAATAATTG 1567
|||||||| | ||| |||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1498 AACTCTCAATGTTTTATAATCCTATCCACTTTATCTGCCCTAATG-CGGTTAAATAATTG 1556
Query 1568 CACTTGAGCTTTAA-TGTATTCTCTGTGTTATGTGTTTT-TGTATGTGAGTTTTTATGTT 1625
||||||||||||| | ||||||||||||||| ||| || |||| |||||||||||||||
Sbjct 1557 TACTTGAGCTTTAACT-TATTCTCTGTGTTATATGTCTTGTGTACGTGAGTTTTTATGTT 1615
Query 1626 GGTAACAA---TATCTACCTTTTCTTATCTTCTGA 1657
||||| || ||||||| ||||||||||||||||
Sbjct 1616 GGTAATAACACTATCTACTTTTTCTTATCTTCTGA 1650
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63648799395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5