BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45207.2
Length=2020
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473846 jgi|Araly1|473846|fgenesh2_kg.1__3800__AT1G45207.2 2737 0.0
> Ahg473846 jgi|Araly1|473846|fgenesh2_kg.1__3800__AT1G45207.2
Length=1931
Score = 2737 bits (1482), Expect = 0.0
Identities = 1803/1955 (92%), Gaps = 33/1955 (2%)
Strand=Plus/Plus
Query 1 ATGCCGTCGGAGTCATCGTACAAAGTCCACCGTCCGGCGAAATCCGGAGGATCTCGACGA 60
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATGCCGTCGGAGTTATCGTACAAAGTCCACCGTCCGGCGAAATCCGGAGTATCTCGACGA 60
Query 61 GACTCAAGCCCCGACTCAATAATCTTCACACCTGAATCTAATCTCAGTCTCTTCTCCTCC 120
||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 61 GACTCAAGCCCCGACTCTATAATCTTCACACCGGAATCAAATCTCAGTCTCTTCTCTTCC 120
Query 121 GCTTCCGTCAGCGTCGATCGTTGCTCTTCCACCTCCGACGCTCACGACCGGGACGACTCT 180
||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 121 GCTTCCGTCAGTGTCGATCGTTGCTCTTCCACCTCCGACGCTCACGACC--G-TGACTCT 177
Query 181 CTCATCTCCGGTCCCTCTCTGGAGCGAGATCAGAGGGTAAGTTCGAGCTGTAAAGATCTA 240
|||||||||| ||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 178 CTCATCTCCGCTCCTTCTCTGGAGCGAGATCAGAGGGTAAGTTCAAGCTGCAAAGATCTA 237
Query 241 GATCTAGACAAGCGTGGTACAGGGTGGAAGAATAGTTGTAACTCTAGAAAATCAAATAAA 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 238 GATCTAGACAAGCGTGGTACAGGGTGGAAGAATAGTTTTAACTCTAGAAAATCAAATAAA 297
Query 301 GTAAAAGCAGCTTGGAAAGAGGAGTTTGAGGTTAAAAAAGATGATGAAAGCCAGAATCTT 360
|||||||||||||||||||||||||||||||| || || |||||||| ||||||||||||
Sbjct 298 GTAAAAGCAGCTTGGAAAGAGGAGTTTGAGGTGAATAAGGATGATGAGAGCCAGAATCTT 357
Query 361 GATTCAGCTAGGAGTTCTTTCTCTGTAGCTCTTAGAGAATGTCAGGAACGAAGATCTAGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GATTCAGCTAGGAGTTCTTTCTCTGTAGCTCTTAGAGAATGTCAGGAACGAAGATCTAGA 417
Query 421 TCTGAAGCGCTGGCGAAAAAGTTAGATTACCAAAGGACTGTTTCGTTGGATCTTAGTAAT 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 ACTGAAGCGCTGGCGAAAAAGTTAGATTACCAAAGGACTGTTTCGTTGGATCTTAGTAAT 477
Query 481 GTAACCTCTACGTCTCCAAGAGTGGTAAATGTGAAGAGAGCTTCAGTTTCAACTAATAAA 540
||||||||| ||||||| ||||||| ||||| |||||||||||||||||||||||||||
Sbjct 478 GTAACCTCTTCGTCTCCGCGAGTGGTGAATGTTAAGAGAGCTTCAGTTTCAACTAATAAA 537
Query 541 TCGAGTGTGTTTCCTAGTCCTGGTACTCCGACTTATCTACATAGTATGCAAAAGGGTTGG 600
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 538 TCGAGTGTGTTTCCTAGTCCTGGTACTCCGACTTATCTGCATAGTATGCAAAAGGGTTGG 597
Query 601 AGTTCAGAGAGAGTACCTTTACGTTCAAACGGAGGAAGAAGTCCGCCAAATGCTGGGTTT 660
|||||||| |||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 598 AGTTCAGAAAGAGTAGCTTTACGTTCAAACGGAGGAAGAAGTCCGCCCAATGCTGGTTTT 657
Query 661 TTACCTTTGTATAGTGGTAGAACGGTTCCTTCTAAGTGGGAAGATGCGGAGAGATGGATA 720
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 658 TTACCTTTGTATAGTGGTAGAACGGTTCCTTCTAAGTGGGAAGATGCAGAGAGATGGATA 717
Query 721 GTTAGTCCTCTTGCTAAGGAAGGAGCTGCCCGTACTTCATTTGGAGCATCGCATGAAAGG 780
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 718 GTTAGTCCTCTTGCTAGGGAAGGAGCTGCCCGAACTTCATTTGGAGCATCGCATGAAAGG 777
Query 781 CGACCTAAAGCAAAGAGTGGTCCATTAGGTCCTCCAGGATTTGCATATTATTCGTTGTAT 840
||||||||||||||||||||||| ||||| ||| |||||||||||||| |||| ||||||
Sbjct 778 CGACCTAAAGCAAAGAGTGGTCCGTTAGGACCTGCAGGATTTGCATATCATTCTTTGTAT 837
Query 841 TCCCCTGCAGTTCCTATGGTTCATGGTGGAAACATGGGAGGCTTAACAGCAAGCTCTCCG 900
|| ||||| |||||||||||||||||||| |||||||| ||||||||| ||||||||
Sbjct 838 TCGCCTGCGGTTCCTATGGTTCATGGTGGGAACATGGGCTTCTTAACAGCTAGCTCTCCA 897
Query 901 TTTTCAGCTGGTGTGTTGCCAGAAACTGTTTCTTCTAGGGGTTCCACTACAGCTGCCTTT 960
||||||||||||||||||||||||||||| |||||| ||||||| |||||| | |||||
Sbjct 898 TTTTCAGCTGGTGTGTTGCCAGAAACTGTCTCTTCTCGGGGTTCTACTACAACAGCCTTC 957
Query 961 CCTCAGCGAATCGATCCATCCATGGCGAGATCAGTTAGCATTCATGGCTGCTCTGAAACA 1020
|| || || | |||||| | |||||| |||||||||||||||||||||||||||||||||
Sbjct 958 CCACAACGGACCGATCCTTGCATGGCTAGATCAGTTAGCATTCATGGCTGCTCTGAAACA 1017
Query 1021 CTTGCATCTTCATCCCAAGATGACATCCATGAAAGTATGAAGGATGCTGCTACCGATGCT 1080
|||| | | ||||||||||||||||||||||||||||| |||||||||||||| ||| ||
Sbjct 1018 CTTGTACCCTCATCCCAAGATGACATCCATGAAAGTATTAAGGATGCTGCTACTGATCCT 1077
Query 1081 CAAGCTGTCTCAAGAAGGGATATGGCAACCCAGATGAGTCCCGAGGGAAGCATCCGGTTT 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1078 CAAGCTGTCTCAAGAAGGGATATGGCAACCCAGATGAGTCCCGAGGGAAGCATTCGCTTT 1137
Query 1141 TCCCCTGAGAGACAGTGTTCGTTCTCTCCCTCCTCTCCATCACCACTACCTATTTCGGAA 1200
|||||| | |||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1138 TCCCCTAATCGACAGTGTTCGTTCTCTCCCTCCTCTCCATCAGCACTACCTATTTCAGAA 1197
Query 1201 CTACTGAATGCTCATTCCAACCGAGCAGAAGTCAAGGACTTACAGGTTGATGAGAAGGTA 1260
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1198 CTACTTAATGCTCATTCCAACCGAGCAGAAGTCAAGGACTTAAAGGTTGATGAGAAGGTA 1257
Query 1261 ACCGTAACTCGCTGGTCAAAGAAGCACAGAGGTCTATACCATGGAAATGGCTCAAAAATG 1320
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1258 ACTGTAACTCGCTGGTCAAAGAAGCACAGAGGTCTGTACCATGGAAATGGCTCAAAAATG 1317
Query 1321 CGAGATCACGTACATGGAAAAGCTACTAACCATGAAGATTTGACATGTGCGACAGAGGAA 1380
||||||||| | ||||||||||||| ||| | ||||||| ||||| || ||||| |||
Sbjct 1318 CGAGATCACTTGCATGGAAAAGCTAGGGACCCTCAAGATTTCACATGCGCCACAGAAGAA 1377
Query 1381 GCCAGAATTATATCTTGGGAAAATTTGCAGAAAGCTAAGGCCGAGGCAGCAATAAGAAAG 1440
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1378 GCTAGAATCATATCTTGGGAAAATTTGCAGAAAGCTAAGGCGGAGGCAGCAATAAGAAAG 1437
Query 1441 CTAGAGAAATATTTCCCACAGATGAAGCTGGAAAAGAAAAGATCATCGTCGATGGAAAAG 1500
|||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1438 CTAGAGAAATATTTTTCACAGATGAAATTGGAAAAGAAAAGATCATCGTCAATGGAAAAG 1497
Query 1501 ATTATGAGAAAAGTAAAATCAGCAGAGAAGAGAGCGGAGGAGATGAGGAGGTCGGTGTTA 1560
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 1498 ATTATGAGAAAAGTGAAATCAGCAGAAAAGAGAGCGGAGGAGATGAGGAGGTCGGTGATA 1557
Query 1561 GACAATAGAGTCTCAACCGCATCTCATGGTAAGGCTTCATCATTCAAAAGAAGTGGGAAG 1620
|||||| |||||| ||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 1558 GACAATCGAGTCTTAACCGCATCCCATGGTAAAGCTTCATCTTTCAAAAGAAGTGGGAAG 1617
Query 1621 AAGAAGATCCCTTCCCTTAGTGGTTGCTTCACCTGCCATGTATTCTAGTTGCCCTTTTTC 1680
|||||| | ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AAGAAGCTTCCTTCTCTTAGTGGTTGCTTCACCTGCCATGTATTCTAGTTGCCCTTTTTC 1677
Query 1681 GAAGAAAA-TACGGTAAATGGAGACTCTTCACTGATGCGTACGCGTAATATTTGGCTTTC 1739
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 1678 GAAGAAAAATACGGTAAATGGAGACTCTTCACTGATGCGTACGCTTAATATTTGG-TA-C 1735
Query 1740 TAATTCCTGCTTGTAATACTACTTTCGATAGTCAGTAGCTGTTAATTGATTTC-AATAGA 1798
| || || | || || | | | || |||||||||||||| |||| |
Sbjct 1736 T--TT--TG-----A-TAG--CT----A-A-T-AG---CTGTTAATTGATTTTGAATACA 1773
Query 1799 TGCGCTTAGTACATTTGTATGTTAGTTCCTAGCTGAGTAAAATCCGAGGGATGAGTCCAC 1858
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1774 TGCGCTTAGTACATTTGTATGTTAGTTCTTAGTTGAGTAAAATCCGAGGGATGAGTCCAC 1833
Query 1859 CCATTTCCACCTTTGTTGGTCT-CTTCGGG-TGTTTAGAGGTGAATTGATCCCA--AGAG 1914
|| |||||||||||||||| | | |||| |||||||||||||||||||||| ||||
Sbjct 1834 CCCTTTCCACCTTTGTTGGCCCGCCCCGGGGTGTTTAGAGGTGAATTGATCCCTTGAGAG 1893
Query 1915 GACAAACTCTTCTTGATAAAATGTATTTGTAATTT 1949
|||||| ||||||||| ||||||||||||||||||
Sbjct 1894 GACAAAATCTTCTTGACAAAATGTATTTGTAATTT 1928
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75951948530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5