BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45230.1
Length=1088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473852 jgi|Araly1|473852|fgenesh2_kg.1__3806__AT1G45230.2 1430 0.0
> Ahg473852 jgi|Araly1|473852|fgenesh2_kg.1__3806__AT1G45230.2
Length=998
Score = 1430 bits (774), Expect = 0.0
Identities = 903/964 (94%), Gaps = 13/964 (1%)
Strand=Plus/Plus
Query 87 TGGCCATGAGCTTGGCTTCGATTCCCTCGTCGTCACCAGTGGCTTCACCGTACTTCCGCT 146
||||||||||||||||||||||| |||||||| | || |||||||| |||||||||||||
Sbjct 45 TGGCCATGAGCTTGGCTTCGATTTCCTCGTCGCCGCCGGTGGCTTCGCCGTACTTCCGCT 104
Query 147 GCCGTA-CTTACATCTTCTCCTTCTCTTCCTCACCTCTCTGTTTATATTTCCCGCGCGGT 205
|||| | ||||||||||||||||| | || ||||||||||||||||||||||||||||||
Sbjct 105 GCCG-AGCTTACATCTTCTCCTTCGCGTCTTCACCTCTCTGTTTATATTTCCCGCGCGGT 163
Query 206 GACTCTACTTCTCTCAGGCCACGAGTTCGCGCCTTGCGAACGGAATCTGACGGTGCTAAA 265
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 164 GACTCAACTTCCCTCAGGCCACGAGTTCGCGCCTTGCGAACGGAATCTGACGGTGCTAAA 223
Query 266 ATCGGTAACTCGGAGTCTTACGGCTCCGAATTGCTTCGTCGGCCTCGTATTGCGTCGGAG 325
||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 224 ATCGGTAACACGGAGTCTTACGGCTCGGAATTGCTTCGTCGGCCGCGTATTGCGTCGGAG 283
Query 326 GAAAGCTCCGAAGAAGAGGAGGAAGAGGAAGAAGAGAAC-AGCGAAGGTGATGAGTTCGT 384
|||||||| ||||| ||||||||||| | |||||| || | |||||||||||||||||
Sbjct 284 GAAAGCTCTGAAGAGGAGGAGGAAGA-G--GAAGAG-ACTGGTGAAGGTGATGAGTTCGT 339
Query 385 CGATTGGGAAGATAAAATCCTTGAGGTTACTGTTCCTCTTGTTGGCTTCGTCAGAATGAT 444
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 340 TGATTGGGAAGATAAAATCCTTGAGGTTACTGTTCCTCTTGTTGGCTTCGTCAGGATGAT 399
Query 445 TCTTCACTCCGGAAAATATGCAAACCGAGATAGGCTAAGCCCCGAGCATGAGAGAACAAT 504
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 400 TCTTCACTCCGGAAAATATGCAAACCGAGATAGGCTAAGCCCCGAGCACGAGAGAACGAT 459
Query 505 TATTGAGATGCTACTTCCTTATCATCCTGAATGTGAGAAGAAGATCGGATGTGGTATAGA 564
|||||||||||| ||||||||||| ||||| | |||||||||||| ||||||||||||||
Sbjct 460 TATTGAGATGCTGCTTCCTTATCACCCTGAGTTTGAGAAGAAGATTGGATGTGGTATAGA 519
Query 565 CTATATTATGGTAGGGCATCACCCGGATTTTGAGAGCTCTCGATGTATGTTTATAGTTCG 624
||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 520 CTATATTATGGTATGGCATCACCCAGATTTTGAGAGCTCTCGATGTATGTTTATAGTTCG 579
Query 625 AAAAGATGGAGAAGTAGTCGACTTTTCGTATTGGAAATGCATAAAAGGTCTTATAAAAAA 684
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 580 AAAAGATGGAGAAGTAGTTGACTTTTCGTATTGGAAATGCATAAAAGGGCTGATAAAAAA 639
Query 685 GAAGTATCCTCTGTATGCAGACAGTTTCATCCTCAGACATTTTCGCAAACGTAGGCAGAA 744
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 640 GAAGTATCCTCTGTACGCAGACAGTTTCATCCTCAGACATTTTCGCAAACGTAGGCAGAA 699
Query 745 CAGATGAATGAAGCCTTATGTAGATTCTCAAACTCAAATGCTCGTAGACTCGGATCCACT 804
|||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||| ||
Sbjct 700 CAGATGAATGAAGC-TTATGTAGATTCTCAAACTCAAACGCTCGTAGACTCAGATCCCCT 758
Query 805 ACAAGGTTTTGGAGTGAGAACTCAGACACAGAAGATCCAGTCACTGTTTTTCTTTGAGTT 864
|||||||||||||||||||||||| | ||||||||| | |||||| ||||||||||||||
Sbjct 759 ACAAGGTTTTGGAGTGAGAACTCAAAGACAGAAGATTCGGTCACTATTTTTCTTTGAGTT 818
Query 865 GGAAATACGAATGGAACTTTCTAGAAAATATGGTTTCCGCAGGAGATATGA-GGAATTAG 923
|||| ||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 819 GGAATTACGAATGGAATTTTCTAGAAAATATGGTTTCCGCAGGAGATATGAAGGA-TTAG 877
Query 924 AACCATCACAAGTCTTTAATATGTTCATTATCTTGAAATCTTTAGCGTTTATATGATGAT 983
|||||||| || | || ||||||||||||||||| |||||||||||||||||||| |||
Sbjct 878 AACCATCAGAAATATT-AATATGTTCATTATCTT-AAATCTTTAGCGTTTATATGTTGA- 934
Query 984 ATCTGTTACATTGAACTTATGTGCAGAGGTAGAGAGAACCAGTACACACTTGTGAGCAGG 1043
||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||
Sbjct 935 ATCTGTTACATTGAACTTATGTGCAGAGGTAGAGAAAACCAGTACACACTTGTGTGCAGG 994
Query 1044 GCTT 1047
||||
Sbjct 995 GCTT 998
Score = 84.2 bits (45), Expect = 2e-15
Identities = 45/45 (100%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 12 GGTTCCGATTCTCCGAATGGATAATGTAACCGTTTAGCTCTCTCT 56
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GGTTCCGATTCTCCGAATGGATAATGTAACCGTTTAGCTCTCTCT 45
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40524660771
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5