BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45231.2
Length=1799
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473847 jgi|Araly1|473847|fgenesh2_kg.1__3801__AT1G45231.2 1947 0.0
> Ahg473847 jgi|Araly1|473847|fgenesh2_kg.1__3801__AT1G45231.2
Length=1651
Score = 1947 bits (1054), Expect = 0.0
Identities = 1470/1656 (89%), Gaps = 87/1656 (5%)
Strand=Plus/Plus
Query 1 ATGGGAAAGGTCAGAGGCGAAGTAGAAGAAGCAGAAGGTGAAGCTATTGAAGCTCTGGGT 60
||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 ATGGGAAAGGTCACAGGCAAAGTAGAAGAAGAAGAAGGTGAAGCTATTGAAGCTCTGGGT 60
Query 61 TCTCTCTTCAAGCTTACTCAAATCCATCTATGGGTCGATACAGATACTCCTCTCTTCCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TCTCTCTTCAAGCTTACTCAAATCCATCTATGGGTCGATACAGATACTCCTCTCTTCCAT 120
Query 121 CAACACAGTGGTA-A-CAAGAGTGTTGATGATACTT-ATGGAATTGCCAACAAT-GGATT 176
|||||||||||| | | | || | | || |||||||| ||||| || |||||
Sbjct 121 GAACACAGTGGTATATCCCCAAACAAGA-G-T-GTTGATGGAATTACCAAC-ATGGGATT 176
Query 177 GATGAAAGAGATGAATGATCTTGGTCTTCCGGTTTCCTTTCGAACAAACAAGCAGTGGAA 236
|||||||||||||||||||||||||||||| |||||||||||| ||| ||| | | |
Sbjct 177 GATGAAAGAGATGAATGATCTTGGTCTTCCTGTTTCCTTTCGAGCAAGCAA--A---G-A 230
Query 237 GAACAGAACTAGAGGCTATCAAAAGAAAGGATTCAAGGATCGATTAGACGAAGAGGTTAA 296
||||||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 231 GAACAGAACAAGAGGCTATCAAAAGAAAGGAATCAAGGATCGATTAGACGACGAGGTTAA 290
Query 297 TGTTATTCTC--A-AAGTAGAAG-A--C--------A-C-T---TTG-A-ATTTGGTGTC 335
|||||||||| | ||| ||||| | | | | | || | |||||||||
Sbjct 291 TGTTATTCTCAAAGAAGAAGAAGAAGGCAAGGATGTAGCATCCAATGTAGTTTTGGTGTC 350
Query 336 TGCTTT---GA----A--TGAGGAGGTTGAGAGT-CCGTGTTTTGAGGA-AGATTGTGTA 384
|| ||| || | |||||||| ||| | | |||| ||| ||||| | |||||||
Sbjct 351 TGATTTGAAGACTCCAGGTGAGGAGGGTGACA-TACCGTCTTTGGAGGACA-ATTGTGTT 408
Query 385 CAAGTAATTGAAGTGGAAGAAGAAAATCATGAAGTTGTTGTGGGGAGCTGTTTTTTGGGA 444
||| |||||| ||| |||||||||||||||||||||||||| | ||| ||| ||||||||
Sbjct 409 CAAATAATTGTAGTCGAAGAAGAAAATCATGAAGTTGTTGTAGAGAGATGTGTTTTGGGA 468
Query 445 AATGGAGATGGAGACTCAGTGTTGGCATCAGAGACAATAGATTCTCATGACTCTAGTGTA 504
|||||||||||||||||||||||||||||||||| || ||||||||||||||||| || |
Sbjct 469 AATGGAGATGGAGACTCAGTGTTGGCATCAGAGAGAAGAGATTCTCATGACTCTAATGAA 528
Query 505 TGGAAGGTCTACTGGGATTCGTTCTATGGACGAAGTTATTTTTACAATTTTAAGACACAA 564
||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 529 TGGAAAGTCTACTGGGATTCGTTCTATGGACGAAGTTATTTTTACAATGTTAAGACACAA 588
Query 565 GAGTCAAAATGGGAGCCGCCACTTGGGATGGAGCATCTAGCTTATAGCGATGAAAGTCAC 624
||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 589 GAGTCCACATGGGAGCCGCCACTTGGGATGGAGCATCTAGCTTATAGCGATGAAAGCCAT 648
Query 625 AACTTGAGTGAATTGG---T-----C-ATAGAGAAGCATCATGATGAC-T-TGT----CT 669
||||||| |||||||| | | | ||||||||||||||||||| | ||| ||
Sbjct 649 AACTTGAATGAATTGGTTATAGAGACAACAGAGAAGCATCATGATGACTTGTGTGAAACT 708
Query 670 GGA----AC--TG-TG----C-TT----G-GC-GATGATGTTCCCTTTGACAAAGCTGAC 711
||| || || || | || | || |||||||||||| ||| ||||||||
Sbjct 709 GGACCTGACGATGATGTTCCCGTTGAAAGAGCTGATGATGTTCCCGCTGAAAAAGCTGAT 768
Query 712 GATCTTGGTGGAGTTTGTCAAAGTCAACTTGAAGCAGAAGCCACAGAGGAAGTTAACAGT 771
||||||| ||||||||||||| ||||| ||||| ||||||||||||||||||||||||||
Sbjct 769 GATCTTGTTGGAGTTTGTCAACGTCAATTTGAAACAGAAGCCACAGAGGAAGTTAACAGT 828
Query 772 TTGATTGATACATACCAAGAAACTTCCATTGGAAATCAATCTTTGGATATTACTAGTCTT 831
||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 829 TTGATTGATACATGCCAAGAAACTTCCATTGGGAATCAATCTTTGGATATTACTACTCTT 888
Query 832 GGTGAAGAGGGAACCGGTGCATATGTTGTCAGTTCCGTTAGAAAGGCTAAGAAAGAGTCT 891
| | ||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 889 GATAAAGAGGGAAACGGTGCATATGTTGTCAGTTCCGTTAGGAAGTCTAAGAAAGAGTCG 948
Query 892 AGAAGATCTCGAGCCAAAAAGAAATTACTCAATTCGTACACAGGGACTGAAATGAAAGGT 951
|||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 949 AGAAGATCTCGAGCCAAAAAGAAATTACTCAATTCGTATACAGGGACTGGAATGAAAGGT 1008
Query 952 GTTCCTGAAGAATATTCTCCAATCCTTGGCAAGTATTGGTGCCAAAGATACCTCCTCTTC 1011
|||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 1009 GTTCTTGAAGAATATTCTGCAACCCTTGGCAAGTATTGGTGCCAAAGATACCTCCTCTTC 1068
Query 1012 TCCAGATTTGATGAAGGCATCAAGATGGATGAGGAAGGATGGTTTTCTGTCACTCCTGAA 1071
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1069 TCCAGATTTGATGAAGGCATCAAAATGGATGAGGAAGGATGGTTTTCTGTAACTCCTGAA 1128
Query 1072 CTTATAGCTAAACATCATGCCACACGCTGTAATGAAGGCATAGTCATTGACTGTTTTACA 1131
| ||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1129 CCTATAGCTAAGCATCATGCCACTCGCTGTAACGAAGGCATAGTCATTGACTGTTTTACA 1188
Query 1132 GGAGTTGGTGGAAATGCTATCCAGTTCGCATCAAGGAGTCACTATGTGATTGCAATTGAT 1191
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1189 GGAGTTGGTGGAAATGCTATTCAGTTCGCATCAAGGAGTCACTATGTGATTGCAATTGAT 1248
Query 1192 TTGGATCCAAAGAAACTTGATTTAGCAAAGCATAATGCTGCCATATATGGTGTTGCTGAT 1251
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 1249 TTGGATCCAAAGAAACTTGATTTAGCACAGCATAATGCTGCCATATATGGTGTTGCGGAT 1308
Query 1252 AAAATCGACTTTGTGAAGGGAGACTTCTTTGACCTCGCACATAACTTGAAGGCAGGCACT 1311
||||||||||||||||||||||| ||||||||| | || ||| |||||||||||||||||
Sbjct 1309 AAAATCGACTTTGTGAAGGGAGATTTCTTTGACTTGGCGCATGACTTGAAGGCAGGCACT 1368
Query 1312 GTATTCCTATCGCCTCCTTGGGGAGGCCCTGATTATCTTAAAGCGAGCACGTATGATATG 1371
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 1369 GTATTCCTATCGCCTCCTTGGGGAGGCCCTGATTATCTTAAAGTGAGTACGTATGATATG 1428
Query 1372 AAGACAATGTTGAGACCTCGTGACGGAGATGCTCTATTTAAGGCGGCCATGAACATTGCG 1431
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1429 AAGACAATGTTGAGACCTCGTGACGGAGAGGCTCTATTTAAGGCGGCCATGAACATTGCG 1488
Query 1432 TCAACAATCATTATGTTTCTTCCAAGAAATGTTGACATTAACCAACTAGCAGAGCTTGCC 1491
||||||||||||||||||||||||||||||||||| ||||||||| | ||||| || |||
Sbjct 1489 TCAACAATCATTATGTTTCTTCCAAGAAATGTTGATATTAACCAATTGGCAGAACTAGCC 1548
Query 1492 TTATCAACGTCTCCTCCATGGTCACTAGAGGTA-G---A-A-AAGAACTATTTAAATGGG 1545
|| | || |||||||||||||||||||||| | | | | |||||||| |||||||||
Sbjct 1549 TTGTTGACATCTCCTCCATGGTCACTAGAGGCAAGTGTAGAGAAGAACTACTTAAATGGG 1608
Query 1546 AAGCTGAAGGCGGTAACAGCGTATTACGTCAGACAA 1581
|||||||||||| |||||||||||||||||||||||
Sbjct 1609 AAGCTGAAGGCGATAACAGCGTATTACGTCAGACAA 1644
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67534004385
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5