BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45233.2
Length=1562
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314163 jgi|Araly1|314163|fgenesh1_pm.C_scaffold_1002943 1940 0.0
Ahg494728 jgi|Araly1|494728|fgenesh2_kg.8__544__AT5G42920.2 603 2e-171
> Ahg314163 jgi|Araly1|314163|fgenesh1_pm.C_scaffold_1002943
Length=1374
Score = 1940 bits (1050), Expect = 0.0
Identities = 1263/1365 (93%), Gaps = 17/1365 (1%)
Strand=Plus/Plus
Query 23 ATGCAATCGGAGATGGCGATAGACACGGTGGCCACGGCGGAGAAATCACCACTAGAGCTA 82
|||| ||||||||| |||| |||||||||||| ||||||||||||||||| || ||||||
Sbjct 1 ATGCTATCGGAGATAGCGAAAGACACGGTGGCTACGGCGGAGAAATCACCGCTTGAGCTA 60
Query 83 CTTCAACAAACCAAAGCCTCCGTCGAAGCAATCATAGCAAAGATGCTCTCCATCAAGCAA 142
|||||| |||||||||||||||||||||||||||| |||||| | ||||| || ||||||
Sbjct 61 CTTCAAGAAACCAAAGCCTCCGTCGAAGCAATCATCGCAAAGCTCCTCTCAATAAAGCAA 120
Query 143 CAAGG-AACCCCTAAATCCGAGAATCGAGAACTCCTCACTCAGATGTTTCTCAACTTCAT 201
||||| |||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 121 CAAGGAAACCCC-AAATCTGAGAATCGAGAACTCCTCACTCAGATGTTCCTCAACTTCAT 179
Query 202 CAATCTTCGTCAAGCGAATCGCTCGATTCTTATAGAAGAAGAGAAAGTGAGAACAGAAAC 261
|||||| |||||||| |||||| |||||||||||||||| |||||| || ||| || ||
Sbjct 180 CAATCTCCGTCAAGCAAATCGCGCGATTCTTATAGAAGAGGAGAAAACGAAAACTGAGAC 239
Query 262 GGAAATAGCAAAATCTCCGGTGGATTTCACGACGTTGGAGCTTCACAATCTCATGTATGA 321
|||| |||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 240 GGAATTAGCAAAATCTCCGGTGGATTTTACGACATTGGAGCTTCACAATCTCATGTATGA 299
Query 322 GAAGAGTCATTACCTCAAAGCTAATAAAGCTAGTAGAGATTTCAAATCTAGGTATCCAAA 381
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 300 GAAGAGTCATTACCTCAAAGCTAATAAAGCTAGTAGAGATTTCAAATCTAAGTATCCAAA 359
Query 382 CATCGATCTCATATCCGAACAAGACTTCTTCAGTGATGCTCCCGAAGCAATCAAATCTCA 441
||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 360 CATCGATCTCATATCTGAACAAGACTTCTTCAGTGATGCTCCTGAAGCTATCAAATCTCA 419
Query 442 AACGTTATCAAATGATAGTTCTCATGATTTGATGCTTAAAAGACTCAATTTTGAGCTTCA 501
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 AACGTTATCAAATGATAGTTCTCATGATTTGATGCTTAAAAGACTCAACTTTGAGCTTCA 479
Query 502 TCAGAGGAAAGAGCTATGCAAGCTTAGAGTGAGGTTGGAGCAACAGAAGAAGAGTTTACT 561
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 480 TCAGAGGAAAGAACTATGCAAGCTTAGAGTGAGGTTGGAGCAACAGAAGAAGTGTTTGCT 539
Query 562 TGAAA-GTAATGCGGAGAGGAACAAGTTTCTGTCAAGTCTTCCAGTGCATCTCAAATCTC 620
||||| | ||||||||| |||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 540 TGAAACG-AATGCGGAGCGGAATAAGTTTCTGTCGAGTCTTCCGGTGCATCTCAAATCTC 598
Query 621 TAAAGAAAGCATCTTTGCCAGTACAGAGCCAGTTGAGTTTGCAGAATCAGAAGAAGCTGA 680
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 599 TAAAGAAAGCATCTTTGCCAGTACAGAGCCAGTTGAGTTTGCAGAATCAGAAGAAGCTCA 658
Query 681 AGTATCATAATCTAGCTGAGCTTCTTCCTCCGCCGCTTTATGTTATATATTCGCAGTTCA 740
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 659 AGTATCATAATCTAGCTGAGCTTCTTCCTCCGCCGCTTTATGTTATATATTCTCAGTTCA 718
Query 741 TGGCACTGAAGGAAGCTTTCGAAGAGAATATCGATGTTGAGGTATCTGGGAGTCTTAAGG 800
|||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||| |
Sbjct 719 TGGCACAAAAGGAAGCTTTTGAAGAGAACATCGATGTCGAGGTATCTGGGAGTCTTAATG 778
Query 801 ATGCTCAAACTTATGCGCGGCAGCAAGCAGAACAGAACTCAGAGAGTCTAAGATTAGAGG 860
||||||||| ||||||||||||||||||||||||||||||||||| ||||||| | |||
Sbjct 779 ATGCTCAAAGTTATGCGCGGCAGCAAGCAGAACAGAACTCAGAGAATCTAAGAATGGAGA 838
Query 861 TTG--G-TG----T--TGATG-AAGAAAGGCAAAGGAAACGACTCAAGAAAGT-GGGTTC 909
||| | || | ||||| || ||||||||||||| |||| |||||||| |||||
Sbjct 839 TTGATGATGAAGATAATGATGGAA-AAAGGCAAAGGAAGCGACCCAAGAAAGAAGGGTT- 896
Query 910 TGATGAGGGAGGAGTATATCAAGTTCATCCTCTTAAAGTTGTCCTTCATGTTTATGATGA 969
||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 897 TGATGAGGGAGGACTATATGAAGTTCATCCTCTTAATGTTGTCCTTCATGTTTATGATGA 956
Query 970 CGAGATTACAGATCCGAAATCTCATGAACTTGTCATGCTCAAGTTTGAGTACTTGTTGAA 1029
||| || |||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 957 TGAGGTTCCAGATCCGAAGTCTCATGATCTTATCATGCTCAAGTTTGAGTACTTGTTGAA 1016
Query 1030 GTTGAATGTTGTATGTGTTGGCATTGAAGAGTCTGAGGATGGACTTGAGAAAAATATACT 1089
|||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 1017 GTTGAATGTTGTTTGTGTTGGCATTGAAGAGTCACAAGATGGACTTGAGAAAAATATACT 1076
Query 1090 ATGTAACTTATTTCCAGACGATTCTGGACTTGAGCCTCCTCATCAGTCAGCCAAGCTCAT 1149
|||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 1077 CTGTAACATATTTCCAGATGATTCTGGACTTGAGCCTCCCCATCAGTCAGCCAAGCTCAT 1136
Query 1150 TCTTGGCAACGATCATGTGTTTGATAAAAGCAGAACTTCGAGGCCATATAAGTGGGCACA 1209
||| ||||| ||||||| |||||| | |||||||||||||||||||| |||||||||||
Sbjct 1137 TCTGGGCAATGATCATGCATTTGATGAGAGCAGAACTTCGAGGCCATACAAGTGGGCACA 1196
Query 1210 ACATTTGGCGGGGATTGAGACTTTACCTGAAATGTCACCATTTTTTACTGACAAGGATAT 1269
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1197 ACATTTGGCGGGGATTGAGATTTTACCTGAAATGTCACCATTTTTTACTGACAAGGATAT 1256
Query 1270 TCAATATAGTGATACAGCTAAAGGCTATGCTTCTGCTTCTGATCACCGCAATGTGCAAAC 1329
|||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1257 TCAAAATAGTGATACAGCTAAAGACTATGCTTCTGCATCTGATCACCGCAATGTGCAAAC 1316
Query 1330 CGTTCTGCAAAGAATACGGTCCCAGAAAAAGACTAAGCTAACGCT 1374
||| ||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1317 CGTCCTGCAAAGAATACGGTCCCAGAAAAAGACTAAGGTAAAGCT 1361
> Ahg494728 jgi|Araly1|494728|fgenesh2_kg.8__544__AT5G42920.2
Length=2592
Score = 603 bits (326), Expect = 2e-171
Identities = 624/766 (81%), Gaps = 28/766 (4%)
Strand=Plus/Plus
Query 65 AAATCACCACTAGAGCTACTTCAACAAACCAAAGCCTCCGTCGAAGCAATCATAGCAAAG 124
||||| ||||| |||||||||| | ||| |||| ||||||| |||| |||| | |||||
Sbjct 101 AAATCTCCACTCGAGCTACTTCGAGAAAGCAAAACCTCCGTAGAAGAAATCGTTTCAAAG 160
Query 125 ATGCTCTCCATCAAGCAACAAGGAACCCCTAAATCCGAGAATCGAGAACTCCTCACTCAG 184
|||||||| || || ||||||||| | |||||||||| ||||||||||||||| ||
Sbjct 161 ATGCTCTCAATGAAAAAACAAGGAAATCAAAAATCCGAGATTCGAGAACTCCTCACACAA 220
Query 185 ATGTTTCTCAACTTCATCAATCTTCGTCAAGCGAATCGCT-CGATTCTT-A-TAGAAGAA 241
||||| ||||||||| ||||||||||||| |||||||| | ||||| || | | || |||
Sbjct 221 ATGTTCCTCAACTTCGTCAATCTTCGTCAGGCGAATCG-TGCGATT-TTGACT-GAGGAA 277
Query 242 GAGAAAGTG-AGAACAGAAACGGAAATAGCAAAATCTCCGGTGGATTTCACGACGTTGGA 300
|| |||||| || | || |||||| |||||| | || || |||||||| || ||| |
Sbjct 278 GATAAAGTGAAG-GCGGAGACGGAACGAGCAAAGGCACCAGTTGATTTCACAACATTGCA 336
Query 301 GCTT-CACAATCTCATGTATGAGAAGAGTCATTACCTCAAAGCTAATAAAGCTAGTAGAG 359
|| || ||||| ||||||||||||||||||||| | ||||||| ||| ||| ||||||
Sbjct 337 -ATTGCATAATCTTATGTATGAGAAGAGTCATTACGTTAAAGCTATTAAGGCTTGTAGAG 395
Query 360 ATTTCAAATCTAGGTATCCAAACATCGATCTCATATCC-GAACAAGACTTC-TTCAGTGA 417
|||||||||||| |||||| | || || || | ||| |||||||||||| ||| || |
Sbjct 396 ATTTCAAATCTAAGTATCCTGATATTGACCTTGT-TCCTGAACAAGACTTCTTTC-GTCA 453
Query 418 TGCTCCCGAAGCAATCAAA-TCTCAAACG-TTATCAAATGATAGTTCTCATGATTTGATG 475
|||||| ||||| |||||| | ||| || || |||| ||||||||| |||| |||||||
Sbjct 454 TGCTCCTGAAGCTATCAAAGAC-CAATCGCTT-TCAAGTGATAGTTCACATGTTTTGATG 511
Query 476 CTTAAAAGACTCAATTTTGAGCTTCATCAGAGGAAAGAGCTATGCAAGCTTA-GAGTGAG 534
| ||| |||||||||||||||||||||||||||||||| | || |||| | ||| |||
Sbjct 512 CCTAAGAGACTCAATTTTGAGCTTCATCAGAGGAAAGAATTGTGTAAGCA-ACGAGCGAG 570
Query 535 GTTGGAGCAACAGAAGAAGAGTTTACTTGAAAGTAATGCGGAGAGGAACAAGTTTCTGTC 594
|||||||||||||||||||||||||| |||| || ||| ||| | || |||||| ||||
Sbjct 571 ATTGGAGCAACAGAAGAAGAGTTTACTAGAAACTATTGCAGAGCGTAAGAAGTTTTTGTC 630
Query 595 AAGTCTTCCAGTGCATCTCAAATCTCTAAAGAAAGCATCT-TTGCCAGTACAGAGCCAGT 653
||||||||| | || || || ||||| ||||||||||| || |||||||||| |||||
Sbjct 631 AAGTCTTCCTCTTCACCTTAAGTCTCTGAAGAAAGCATCGCTT-CCAGTACAGAACCAGT 689
Query 654 TGAGTTTGCAGAATCAGAA-GAAGCTGAAGTATCATAATCTAGCTGAGCTTCTTCCTCCG 712
|| || | ||| | || || ||| |||||| | |||||||| |||||||| ||||||||
Sbjct 690 TGGGTATCCAGCA-CACAAAGAAACTGAAGCAGCATAATCTTGCTGAGCTGCTTCCTCCT 748
Query 713 CCGCTTTATGTTATATATTCGCAGTTCATGGCACTGAAGGAAGCTTTCGAAGAGAATATC 772
||||||||||| || || || ||| || |||||| ||||||||||| || |||| ||||
Sbjct 749 CCGCTTTATGTAATTTACTCACAGCTCTTGGCACAAAAGGAAGCTTTTGAGGAGAGTATC 808
Query 773 GATGTTG-AGGTA-TCTGGGAGTCTTAAGGATGCTCAAACTTATGC 816
|| ||| ||||| | |||||||||||||||||||||| |||||||
Sbjct 809 GAA-TTGGAGGTAGT-TGGGAGTCTTAAGGATGCTCAAGCTTATGC 852
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58506616320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5