BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G45248.5

Length=797
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg913687 jgi|Araly1|913687|Al_scaffold_0001_3941                    375    2e-103


> Ahg913687 jgi|Araly1|913687|Al_scaffold_0001_3941
Length=546

 Score =  375 bits (203),  Expect = 2e-103
 Identities = 242/261 (93%), Gaps = 1/261 (0%)
 Strand=Plus/Plus

Query  146  CCCAAAGGAAGAAAAAATATTGGATTGAGGCGTGAGGATGCAGCACGAGACCGCATGAAA  205
            ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct  7    CCCAAAGGAAGAAAAAAGATTGGATTGAGGCGTCAGGATGCAGCACGAGACCGCATGAAA  66

Query  206  GAGTTTGGGTTTAAGAAGCCTGTTATCAATGCGAGTATCAAGCAAGTGCTAAAGGTGTAT  265
            |||||||| ||| | |||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct  67   GAGTTTGGATTTGATAAGCGTGTTATCAATGAGAGTATCAAGCAAGTGCTAAAGGTGTAT  126

Query  266  GGTGAGGACCAATGGTTTCTGATTGAAGATGCTAACTATGAGGTC-TCCTTAATATTTCC  324
            ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| |
Sbjct  127  GGTGAGGACCAATGGTTTCTGATTGAAGATGCTAACTATGATGCCCTCCTTAATATTTGC  186

Query  325  CTTAAAAAGCAAGAGGAACAAGCCTACCGATTGGCGGCCGAGGAACACGAAGAAACAGCT  384
            ||| ||||| |||||||||||| | ||| ||||||||||||||||||| |||||||||||
Sbjct  187  CTTGAAAAGAAAGAGGAACAAGACAACCAATTGGCGGCCGAGGAACACAAAGAAACAGCT  246

Query  385  CAGGAAGAACCAGAAGAAGAA  405
            |||||||||  ||||||||||
Sbjct  247  CAGGAAGAAGAAGAAGAAGAA  267


 Score =  320 bits (173),  Expect = 9e-87
 Identities = 222/244 (91%), Gaps = 9/244 (4%)
 Strand=Plus/Plus

Query  407  AGTCATGGACTCATCACCATCAGCTTTTCAATTCGTAGAAGCACCACCAGTAGATTATGC  466
            ||||||||||||||||||| |||||||||||||||||||||   |||||||||||| |||
Sbjct  306  AGTCATGGACTCATCACCACCAGCTTTTCAATTCGTAGAAG---CACCAGTAGATTTTGC  362

Query  467  ACACCATTCTGTTGGAGGTGCGCAGAGTTCTCACTGTGGATGGCTAAGCAGTGAGGAGGA  526
            |||||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct  363  ACACCAGTCTGTTGGAGGTGCCCACAGTTCTCACTGTGGATGGCTAAGCAGTGAAGAGGA  422

Query  527  GACAGATCC-----A-GATAAGGATAGTGATGAGATGATTCAGCTAACTCCAGAACCTCT  580
            |||||||||     | ||| |||||||||||||||||||| |||||||||||||||||||
Sbjct  423  GACAGATCCGGATGAGGATGAGGATAGTGATGAGATGATTGAGCTAACTCCAGAACCTCT  482

Query  581  CTGTGAAGAACTTGAAGAGATTCTCAGAGAAGTATATGGACAGAAGAAGTTGAAGTACAA  640
            ||||||||||||||||||| |||| || |||||||||||||| |||||| ||||||||||
Sbjct  483  CTGTGAAGAACTTGAAGAGCTTCTTAGGGAAGTATATGGACAAAAGAAGATGAAGTACAA  542

Query  641  CTAA  644
            ||||
Sbjct  543  CTAA  546



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29430891924


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5