BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45474.1
Length=913
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473855 jgi|Araly1|473855|fgenesh2_kg.1__3809__AT1G45474.1 1445 0.0
> Ahg473855 jgi|Araly1|473855|fgenesh2_kg.1__3809__AT1G45474.1
Length=906
Score = 1445 bits (782), Expect = 0.0
Identities = 869/911 (95%), Gaps = 6/911 (1%)
Strand=Plus/Plus
Query 1 AGAGTCAGAACAGAACAAAAACGTAAGCaaaaaaaaaTAAAACAGAGCAAAATGGCCGTA 60
||||||||||||||||| |||||||| | |||||| ||||||||||||||||||||||
Sbjct 1 AGAGTCAGAACAGAACACAAACGTAA--ACCAAAAAA-AAAACAGAGCAAAATGGCCGTA 57
Query 61 GTTTTACGTGGAGGCATCACCGGAGGATTTCTTCACCATCGTCGTGACGCTTCATCCGTC 120
|||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 58 GTTTTACGTGGAGGCATCACCGGAGGATTTCTTCACCAACGTCGCGACACTTCATCCGTC 117
Query 121 ATCACAAGAAGAATCTCATCCGTCAAAGCCGCAGGAGGAGGCATCAACCCAACGGTGGCT 180
|| |||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct 118 ATAACAAGAAGAATCTCATCCGTCAGAGCCGCAGGAGGAGGCATCAACCCAACAGTGGCT 177
Query 181 GTTGAACGTGCCACGTGGCTACCTGGACTAAACCCTCCTCCTTATCTTGATGGAAATTTA 240
|||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||
Sbjct 178 GTTGAACGTGCCACGTGGCTACCTGGCCTCAACCCTCCTCCTTATCTTGATGGAAAGTTA 237
Query 241 GCTGGAGATTACGGGTTTGACCCACTCGGGTTAGGAGAGGATCCGGAAAGCTTGAAG-TG 299
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||| || ||
Sbjct 238 GCTGGAGATTACGGGTTTGACCCACTCGGGTTAGGAGAGGATCCAGAAAGTTTG-AGATG 296
Query 300 GTATGTTCAAGCAGAGCTTGTTCACTCTCGTTTCGCTATGCTCGGTGTTGCAGGAATACT 359
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 297 GTATGTTCAAGCAGAACTTGTTCATTCTCGTTTCGCTATGCTCGGTGTTGCAGGAATACT 356
Query 360 CTTCACTGATCTCCTTCGGACCACAGGGATTCGTAATTTACCGGTTTGGTATGAAGCTGG 419
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTCACCGATCTGCTTCGGACCACAGGGATTCGTAATTTACCGGTTTGGTATGAAGCTGG 416
Query 420 AGCTGTGAAATTTGATTTTGCTAGTACAAAAACTCTCATAGTTGTACAGTTTCTACTTAT 479
|||||| ||||||||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 417 AGCTGTCAAATTTGATTTTGCTAGCACAAAAACACTCATAGTTGTACAGTTTTTACTTAT 476
Query 480 GGGGTTTGCTGAGACTAAAAGGTATATGGATTTTGTCTCTCCGGGATCACAAGCCAAAGA 539
||||||||||||||||||||||||| |||||| |||||||||||| || |||||||||||
Sbjct 477 GGGGTTTGCTGAGACTAAAAGGTATGTGGATTATGTCTCTCCGGGCTCTCAAGCCAAAGA 536
Query 540 AGGATCGTTTTTCTTTGGACTTGAAGCAGCACTCGAGGGGCTCGAGCCTGGATATCCCGG 599
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AGGATCTTTTTTCTTTGGACTTGAAGCAGCACTCGAGGGGCTCGAGCCTGGATATCCCGG 596
Query 600 AGGACCGCTTTTAAACCCATTAGGCCTTGCTAAGGATGTTCAAAATGCTCATGACTGGAA 659
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 597 AGGACCGCTTTTAAACCCATTAGGCCTTGCTAAGGATATTAAAAATGCTCATGACTGGAA 656
Query 660 GCTTAAGGAGATCAAGAACGGTCGTCTAGCGATGATGGCGATGCTCGGGTTCTTTGTTCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCTTAAGGAGATCAAGAACGGTCGTCTAGCGATGATGGCGATGCTCGGGTTCTTTGTTCA 716
Query 720 AGCCTCTGTGACTCACACTGGCCCTATTGATAACCTTGTTGAGCATCTCTCTAATCCATG 779
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 717 AGCCTCTGTGACTCACACTGGCCCTATCGATAACCTTGTCGAGCATCTCTCTAATCCATG 776
Query 780 GCATAAGACCATCATTCAAACCCTCTTCACCTCTACATCTTAGGTACATTCTTTTGTAAT 839
||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||
Sbjct 777 GCATAAGACCATCATTCAAACCCTCTTCAGCTCTGCTTCTTAGGTACATTCTTTTGTAAC 836
Query 840 GAAAAATTCGATTATTCGACAAGTGTATCAATACCTTTATTTCATTTAAGAGTACAACAA 899
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 GAAAA-TTCGATTATTCGACAAGTGTATCAATACCTTTATTTCATTTAAGAGTACAACAA 895
Query 900 ATCTGTTCTAA 910
|||| ||||||
Sbjct 896 ATCTATTCTAA 906
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33853150296
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5