BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45545.1
Length=2259
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473856 jgi|Araly1|473856|fgenesh2_kg.1__3810__AT1G45545.1 3210 0.0
> Ahg473856 jgi|Araly1|473856|fgenesh2_kg.1__3810__AT1G45545.1
Length=2220
Score = 3210 bits (1738), Expect = 0.0
Identities = 2007/2138 (94%), Gaps = 13/2138 (1%)
Strand=Plus/Plus
Query 9 TGATCATAAAGTTTCCAATGACATTAGTTTACTTCCTGATCTTAATTTCGATTCTTCCTC 68
|||| ||||||||||||||||| || |||||||||||||||| ||| ||||||| || |
Sbjct 6 TGATGATAAAGTTTCCAATGACCTTTGTTTACTTCCTGATCTCAATGTCGATTCCTCGAC 65
Query 69 GCCTTT-TACTAGTATCGAATTCGATTCATCGATTTGTGATCTCCTAAACTTGGAAACCG 127
|||||| | ||||||||||||||||| |||| ||| |||||||||||||||| ||||| |
Sbjct 66 GCCTTTCT-CTAGTATCGAATTCGATGCATCCATTAGTGATCTCCTAAACTTAGAAACTG 124
Query 128 GTGGAGATACACCAAATCTTATACCTGACCATAATCCGTTTTTTGATTCTTTCGATGGAC 187
||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 125 GTGGAGATACACCAAATCTTATACCGGAACATAATCCGTTTTTTGATTCTTTTTATGGA- 183
Query 188 TTCAAGAAGAAGAAGAAGATTCACATTTTGTTGTTGAA-C--CAGAGTCTCCAAAGGTGT 244
| | |||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 184 --C---ATGAAGAAGAAGATTCACATTTTGTTGTTGAAGCAGAAGAGTCTCCAAAGGTGT 238
Query 245 ATATTGCACCAAGAGTCATGATAAACCATCAAGACTCGTTTTCGCTAGACTCTCGAAACG 304
|||||||||||||||| |||| |||||||||||||||||||| ||||||| ||| ||
Sbjct 239 ATATTGCACCAAGAGTTGTGATTAACCATCAAGACTCGTTTTCATTAGACTCGAGAATCG 298
Query 305 ATGAATATATCGAAGATGTAAAGATATTGCCTGGCTCACCTGGAGGAATTCAAGATCTTG 364
|||||| ||||||||||| || |||||| ||||||||||||||||||||||||||| |||
Sbjct 299 ATGAATTTATCGAAGATGCAAGGATATTACCTGGCTCACCTGGAGGAATTCAAGATGTTG 358
Query 365 GTCTTTCACGTCTTAAAGTTCCTGGCTCACCAAGAGCTTTTGTGCATCCGAGATCATCTG 424
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 359 GTCTTTCACGTCTTAAAGTTCCTGGCTCACCAAGAGCTTTTGTTCATCCGAGATCATCTG 418
Query 425 GATCCCCGCGTTTCGTGTCACCGACAAGTCCTGTCTTGATCGATACCGCTGCACCGTTTG 484
|||||| ||||||| |||||| || ||||||||||||||||||||||||||||||||||
Sbjct 419 CATCCCCACGTTTCGGGTCACCTACGAGTCCTGTCTTGATCGATACCGCTGCACCGTTTG 478
Query 485 AATCGGTCAAGGAAGCGGTTTCTAAGTTTGGTGGAATCACAGATTGGAAAGCACATAAAA 544
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 479 AATCGGTCAAGGAAGCGGTTTCAAAGTTTGGTGGGATCACAGATTGGAAAGCACATAAAA 538
Query 545 TCCAAACAATAGAGAGACGGAAGACGGTGGATCAAGAGCTTGAGAAGATACAAGAAGATA 604
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TCCAGACAATAGAGAGACGGAAGACGGTGGATCAAGAGCTTGAGAAGATACAAGAAGATA 598
Query 605 TGCCTGACTACAAGAAACAAGCAGTTGTAGCGGAAGAAGCAAAGCATCAGGTGGTGATGG 664
||||||| || |||||||||||||||||||||||||| || |||||||| ||||||||||
Sbjct 599 TGCCTGAGTATAAGAAACAAGCAGTTGTAGCGGAAGAGGCGAAGCATCATGTGGTGATGG 658
Query 665 AGCTTGAGAGGACAAGGAATGTCGTCGAAGAGCTAAAACTGGAGCTAGAAAAGGCTGAAA 724
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 659 AGCTTGAGAGGACAAGGAATGTCGTCGAAGAGCTTAAACTGGAGCTAGAGAAGGCTGAAA 718
Query 725 AAGAAGAGCAACAAGCGAAACAAGATTCTGATCTCGCGAAGCTGCGTGTGGAAGAAATGG 784
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 719 AAGAAGAGCAACAAGCGAAACAAGATTCTGATCTCGCGAAGCTGCGAGTGGAGGAAATGG 778
Query 785 AGCAAGGGATAGCTGGTGAGGTAAGTGTTGCAGCGAAATCGCAGCTCGAGGTGGCTAAAG 844
||||||||||||| | ||| | ||||| ||||||||| | ||||| ||||| |||||||
Sbjct 779 AGCAAGGGATAGCAGATGAAGCGAGTGTCGCAGCGAAAACACAGCTTGAGGTAGCTAAAG 838
Query 845 CGAGGCATTTGTCAGCGGTGTCTGAGCTAGGAACCATAAGAGAAGAGATAGAAATGGTGT 904
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CGAGGCATTTGTCAGCGGTTTCTGAGCTAGGAACCATAAGAGAAGAGATAGAAATGGTGT 898
Query 905 CCAATGAGTATGAATCTCTTTTGACGGAGAAAGATTTGGCTGCTAAAAAAGCAGAGGACT 964
||||||||||||| ||| |||||| |||||||||||||||||| |||||||||||||| |
Sbjct 899 CCAATGAGTATGAGTCTGTTTTGAGGGAGAAAGATTTGGCTGCGAAAAAAGCAGAGGATT 958
Query 965 CTGTTTTGAAAGCTAAAGATGTAGAGAAACAAATGGAGGGTTTGACTATGGAGGTCATTG 1024
||||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 959 CTGTTTTGAAAGCTAAAGATGTAGAGAAACAAATGGAGGGTTTAACGATAGAGGTCATTG 1018
Query 1025 CAACCAAGCAGTTATTGGAGTTAGCTCATGCGACTCATCTTGAAGCTCAAGAAAAGAAAC 1084
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1019 CAACCAAGCAGTTATTGGAGTCAGCTCATGCGACTCATCTCGAAGCTCAAGAAAAGAAAC 1078
Query 1085 TCGATGCAGCCATGGCTCGAGACCAGGACGTTTATAACCAGGAGAAGGAACTCAAAATGG 1144
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1079 TTGATGCAGCCATGGCTCGAGACCAGGACGTTTATAACCAGGAGAAGGAACTTAAAATGG 1138
Query 1145 TGGAAGATGAGATTAAGAGGTTTAGACAAGATATTGATGCGGCAGATGATGTCAAAACAA 1204
||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct 1139 TGGAAGAAGAGATTAAGAGGTTTAGACAAGACATTGATGCGGCAGATGATGTGAAAACCA 1198
Query 1205 AACTAAAGACTGCTTCTGCACTTCAACAAGATTTGAGAGCCGAGATAGCTGCTTACAAAG 1264
|||||||||||||||||||||||||||||||||| || ||||| ||||| ||||||||||
Sbjct 1199 AACTAAAGACTGCTTCTGCACTTCAACAAGATTTAAGGGCCGAAATAGCCGCTTACAAAG 1258
Query 1265 ACTCAAACATGGGAAAGAGAAACAACAGTGACATACAAGCAGCGGTTGATTCTGCTAGGA 1324
|||||||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||
Sbjct 1259 ACTCAAACGTGGGAAAGAGAAACAACAGTGTCATACAAGCAGCGGTTGATTCCGCGAGGA 1318
Query 1325 AGGAGCTTGAAGAAGTTATATCCAACATAGAGAAAGCAAATTCCGAGGTGAAAACTTTGA 1384
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1319 AGGAGCTTGAAGAAGTTATATCCAACATTGAGAAAGCAAATTCCGAGGTGAAAACTTTGA 1378
Query 1385 AGATAATTGTCGGATCATTGCAGTCTGAACTCGCgagagagaagcatgatttatcggaaa 1444
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 1379 AGATAATTGTCGGATCATTGCAGTCGGAACTTGCGAGAGAGAAGCAAGATTTATCGGAAA 1438
Query 1445 -caagacagagaaacagagaagacacaagagaggagaaatgcacagagaTAGCTAAGAAG 1503
||| |||||||||||||||||| ||||||| ||| ||||||||||||||||| ||||||
Sbjct 1439 CCAA-ACAGAGAAACAGAGAAGAAACAAGAGTGGATAAATGCACAGAGATAGCCAAGAAG 1497
Query 1504 TTGCAAGAAGCTAGCAGGGAGGCAGAGGAGGCAAAGTCACTTGCGATAGCTGCTCGAGAG 1563
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 1498 TTGCAAGAAGCTAGCAGGGAGGCAGAGGAGGCAAAGTCACTTGCCATAGCTGGTCGAGAG 1557
Query 1564 GAGCTAAGAAAGGCGAAGGAAGAGTCCGATGAAGCGAAAACAGGACTCTCTGCGGTAGAA 1623
||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1558 GAGCTGAGAAAGGCGAAGGAAGAGTCGGATGAAGCGAAAACAGGACTCTCTGCGATAGAA 1617
Query 1624 AGACAGTTAATGGAGTCGAAAAAGGAAATGGAAGCTTCAAGAGCTTCTGAGAAGTTAGCT 1683
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1618 AGACAGTTAATGGAGGCGAAAAAGGAAATGGAAGCTTCTAGAGCTTCTGAGAAGTTGGCC 1677
Query 1684 TTAGCTGCAATAAAAGCATTGCAAGAGACTGAATATGCTAACAAAATCGAAGACATTAGT 1743
|||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1678 TTAGCTGCGATAAAAGCGTTGCAAGAGACCGAATATGCTAACAAAATCGAAGACATTAGT 1737
Query 1744 AGTTCTCCAAAAAGCATAATAATTTCAGTGGAGGAATATTATGAGCTAAGCAAGCAAGCA 1803
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 AGTTCACCAAGAAGCATAATAATTTCAGTGGAGGAATATTATGAGCTAAGCAAGCAAGCA 1797
Query 1804 CATGAGGTAGAAGAGGCAGCTAATAGAAAACTAGCGGAGATCGTCTCCAAAATCGAGGTG 1863
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1798 CATGAGGTAGAAGAGGCAGCCAATAGAAAACTAGCGGAGATCGTCTCCAAAATCGAGATG 1857
Query 1864 GCTAAGGAAGAGGAATCAAGAATCTTGGAAAATCTAGAGGAAGTGAGTAGAGAAACAGCT 1923
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1858 GCTAAAGAAGAGGAATCAAGAATCTTGGAAAATCTAGAGGAAGTGAGTAGAGAAACAGCA 1917
Query 1924 ATAAGAAAGGTAGAGCTAAAAGAAGCAATGACAAAAGTTGAGAAAGCTAGAGATGGGAAG 1983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1918 ATAAGAAAGGTAGAGCTAAAAGAAGCAATGACAAAAGTTGAGAAAGCTAGAGATGGGAAG 1977
Query 1984 GTTGGTATGGATCACGAGTTGCGAAAATGGAGGTCGGATAACGGGAATAGAAGCCCCGAG 2043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GTTGGTATGGATCACGAGTTGCGAAAATGGAGGTCGGATAACGGGAATAGAAGCCCCGAG 2037
Query 2044 GGAGGAAATAAGGAGAACTTAAGCAAGTCTAAATCGGCTTTGCATCAACCAACAACGTTT 2103
||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| | |||
Sbjct 2038 GGAGGAAATAAGGAGAACTTAAGCAAGTCCAAATCGGCTTTACATAAACCAACATCATTT 2097
Query 2104 ACATTTGGTGAACAAGCAAGCAGTAGTAATGTGACCCC 2141
|||||||||| ||||||||||||||||||||||||||
Sbjct 2098 GCATTTGGTGAGCAAGCAAGCAGTAGTAATGTGACCCC 2135
Score = 130 bits (70), Expect = 5e-29
Identities = 101/115 (88%), Gaps = 6/115 (5%)
Strand=Plus/Plus
Query 2143 CAAGCAAGCAGTAGTAATGTGACTCCTGAAACTGAAACaaaaaagaaaaaGAAGAGGTTC 2202
||||||||||||||||||||||| || ||||||| ||||||||||||||||| ||
Sbjct 2110 CAAGCAAGCAGTAGTAATGTGAC-CC-----CTGAAACTAAAAAGAAAAAGAAGAGATTT 2163
Query 2203 TCTCTGTTACCAAAAGTCTTCATGTTCTTGTCAAGGAAGAAGTCATCCAACAAGT 2257
||| || | ||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 2164 TCTTTGCTGCCAAAGGTCTTCATGTTCTTGTCAAGGAAGAAGTCGTCCAACAAGT 2218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85055517085
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5