BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G45545.1 Length=2259 Score E Sequences producing significant alignments: (Bits) Value Ahg473856 jgi|Araly1|473856|fgenesh2_kg.1__3810__AT1G45545.1 3210 0.0 > Ahg473856 jgi|Araly1|473856|fgenesh2_kg.1__3810__AT1G45545.1 Length=2220 Score = 3210 bits (1738), Expect = 0.0 Identities = 2007/2138 (94%), Gaps = 13/2138 (1%) Strand=Plus/Plus Query 9 TGATCATAAAGTTTCCAATGACATTAGTTTACTTCCTGATCTTAATTTCGATTCTTCCTC 68 |||| ||||||||||||||||| || |||||||||||||||| ||| ||||||| || | Sbjct 6 TGATGATAAAGTTTCCAATGACCTTTGTTTACTTCCTGATCTCAATGTCGATTCCTCGAC 65 Query 69 GCCTTT-TACTAGTATCGAATTCGATTCATCGATTTGTGATCTCCTAAACTTGGAAACCG 127 |||||| | ||||||||||||||||| |||| ||| |||||||||||||||| ||||| | Sbjct 66 GCCTTTCT-CTAGTATCGAATTCGATGCATCCATTAGTGATCTCCTAAACTTAGAAACTG 124 Query 128 GTGGAGATACACCAAATCTTATACCTGACCATAATCCGTTTTTTGATTCTTTCGATGGAC 187 ||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 125 GTGGAGATACACCAAATCTTATACCGGAACATAATCCGTTTTTTGATTCTTTTTATGGA- 183 Query 188 TTCAAGAAGAAGAAGAAGATTCACATTTTGTTGTTGAA-C--CAGAGTCTCCAAAGGTGT 244 | | |||||||||||||||||||||||||||||| | ||||||||||||||||| Sbjct 184 --C---ATGAAGAAGAAGATTCACATTTTGTTGTTGAAGCAGAAGAGTCTCCAAAGGTGT 238 Query 245 ATATTGCACCAAGAGTCATGATAAACCATCAAGACTCGTTTTCGCTAGACTCTCGAAACG 304 |||||||||||||||| |||| |||||||||||||||||||| ||||||| ||| || Sbjct 239 ATATTGCACCAAGAGTTGTGATTAACCATCAAGACTCGTTTTCATTAGACTCGAGAATCG 298 Query 305 ATGAATATATCGAAGATGTAAAGATATTGCCTGGCTCACCTGGAGGAATTCAAGATCTTG 364 |||||| ||||||||||| || |||||| ||||||||||||||||||||||||||| ||| Sbjct 299 ATGAATTTATCGAAGATGCAAGGATATTACCTGGCTCACCTGGAGGAATTCAAGATGTTG 358 Query 365 GTCTTTCACGTCTTAAAGTTCCTGGCTCACCAAGAGCTTTTGTGCATCCGAGATCATCTG 424 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 359 GTCTTTCACGTCTTAAAGTTCCTGGCTCACCAAGAGCTTTTGTTCATCCGAGATCATCTG 418 Query 425 GATCCCCGCGTTTCGTGTCACCGACAAGTCCTGTCTTGATCGATACCGCTGCACCGTTTG 484 |||||| ||||||| |||||| || |||||||||||||||||||||||||||||||||| Sbjct 419 CATCCCCACGTTTCGGGTCACCTACGAGTCCTGTCTTGATCGATACCGCTGCACCGTTTG 478 Query 485 AATCGGTCAAGGAAGCGGTTTCTAAGTTTGGTGGAATCACAGATTGGAAAGCACATAAAA 544 |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| Sbjct 479 AATCGGTCAAGGAAGCGGTTTCAAAGTTTGGTGGGATCACAGATTGGAAAGCACATAAAA 538 Query 545 TCCAAACAATAGAGAGACGGAAGACGGTGGATCAAGAGCTTGAGAAGATACAAGAAGATA 604 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 TCCAGACAATAGAGAGACGGAAGACGGTGGATCAAGAGCTTGAGAAGATACAAGAAGATA 598 Query 605 TGCCTGACTACAAGAAACAAGCAGTTGTAGCGGAAGAAGCAAAGCATCAGGTGGTGATGG 664 ||||||| || |||||||||||||||||||||||||| || |||||||| |||||||||| Sbjct 599 TGCCTGAGTATAAGAAACAAGCAGTTGTAGCGGAAGAGGCGAAGCATCATGTGGTGATGG 658 Query 665 AGCTTGAGAGGACAAGGAATGTCGTCGAAGAGCTAAAACTGGAGCTAGAAAAGGCTGAAA 724 |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 659 AGCTTGAGAGGACAAGGAATGTCGTCGAAGAGCTTAAACTGGAGCTAGAGAAGGCTGAAA 718 Query 725 AAGAAGAGCAACAAGCGAAACAAGATTCTGATCTCGCGAAGCTGCGTGTGGAAGAAATGG 784 |||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 719 AAGAAGAGCAACAAGCGAAACAAGATTCTGATCTCGCGAAGCTGCGAGTGGAGGAAATGG 778 Query 785 AGCAAGGGATAGCTGGTGAGGTAAGTGTTGCAGCGAAATCGCAGCTCGAGGTGGCTAAAG 844 ||||||||||||| | ||| | ||||| ||||||||| | ||||| ||||| ||||||| Sbjct 779 AGCAAGGGATAGCAGATGAAGCGAGTGTCGCAGCGAAAACACAGCTTGAGGTAGCTAAAG 838 Query 845 CGAGGCATTTGTCAGCGGTGTCTGAGCTAGGAACCATAAGAGAAGAGATAGAAATGGTGT 904 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 839 CGAGGCATTTGTCAGCGGTTTCTGAGCTAGGAACCATAAGAGAAGAGATAGAAATGGTGT 898 Query 905 CCAATGAGTATGAATCTCTTTTGACGGAGAAAGATTTGGCTGCTAAAAAAGCAGAGGACT 964 ||||||||||||| ||| |||||| |||||||||||||||||| |||||||||||||| | Sbjct 899 CCAATGAGTATGAGTCTGTTTTGAGGGAGAAAGATTTGGCTGCGAAAAAAGCAGAGGATT 958 Query 965 CTGTTTTGAAAGCTAAAGATGTAGAGAAACAAATGGAGGGTTTGACTATGGAGGTCATTG 1024 ||||||||||||||||||||||||||||||||||||||||||| || || |||||||||| Sbjct 959 CTGTTTTGAAAGCTAAAGATGTAGAGAAACAAATGGAGGGTTTAACGATAGAGGTCATTG 1018 Query 1025 CAACCAAGCAGTTATTGGAGTTAGCTCATGCGACTCATCTTGAAGCTCAAGAAAAGAAAC 1084 ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| Sbjct 1019 CAACCAAGCAGTTATTGGAGTCAGCTCATGCGACTCATCTCGAAGCTCAAGAAAAGAAAC 1078 Query 1085 TCGATGCAGCCATGGCTCGAGACCAGGACGTTTATAACCAGGAGAAGGAACTCAAAATGG 1144 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1079 TTGATGCAGCCATGGCTCGAGACCAGGACGTTTATAACCAGGAGAAGGAACTTAAAATGG 1138 Query 1145 TGGAAGATGAGATTAAGAGGTTTAGACAAGATATTGATGCGGCAGATGATGTCAAAACAA 1204 ||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||| | Sbjct 1139 TGGAAGAAGAGATTAAGAGGTTTAGACAAGACATTGATGCGGCAGATGATGTGAAAACCA 1198 Query 1205 AACTAAAGACTGCTTCTGCACTTCAACAAGATTTGAGAGCCGAGATAGCTGCTTACAAAG 1264 |||||||||||||||||||||||||||||||||| || ||||| ||||| |||||||||| Sbjct 1199 AACTAAAGACTGCTTCTGCACTTCAACAAGATTTAAGGGCCGAAATAGCCGCTTACAAAG 1258 Query 1265 ACTCAAACATGGGAAAGAGAAACAACAGTGACATACAAGCAGCGGTTGATTCTGCTAGGA 1324 |||||||| ||||||||||||||||||||| ||||||||||||||||||||| || |||| Sbjct 1259 ACTCAAACGTGGGAAAGAGAAACAACAGTGTCATACAAGCAGCGGTTGATTCCGCGAGGA 1318 Query 1325 AGGAGCTTGAAGAAGTTATATCCAACATAGAGAAAGCAAATTCCGAGGTGAAAACTTTGA 1384 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1319 AGGAGCTTGAAGAAGTTATATCCAACATTGAGAAAGCAAATTCCGAGGTGAAAACTTTGA 1378 Query 1385 AGATAATTGTCGGATCATTGCAGTCTGAACTCGCgagagagaagcatgatttatcggaaa 1444 ||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||| Sbjct 1379 AGATAATTGTCGGATCATTGCAGTCGGAACTTGCGAGAGAGAAGCAAGATTTATCGGAAA 1438 Query 1445 -caagacagagaaacagagaagacacaagagaggagaaatgcacagagaTAGCTAAGAAG 1503 ||| |||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||| Sbjct 1439 CCAA-ACAGAGAAACAGAGAAGAAACAAGAGTGGATAAATGCACAGAGATAGCCAAGAAG 1497 Query 1504 TTGCAAGAAGCTAGCAGGGAGGCAGAGGAGGCAAAGTCACTTGCGATAGCTGCTCGAGAG 1563 |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| Sbjct 1498 TTGCAAGAAGCTAGCAGGGAGGCAGAGGAGGCAAAGTCACTTGCCATAGCTGGTCGAGAG 1557 Query 1564 GAGCTAAGAAAGGCGAAGGAAGAGTCCGATGAAGCGAAAACAGGACTCTCTGCGGTAGAA 1623 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1558 GAGCTGAGAAAGGCGAAGGAAGAGTCGGATGAAGCGAAAACAGGACTCTCTGCGATAGAA 1617 Query 1624 AGACAGTTAATGGAGTCGAAAAAGGAAATGGAAGCTTCAAGAGCTTCTGAGAAGTTAGCT 1683 ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| || Sbjct 1618 AGACAGTTAATGGAGGCGAAAAAGGAAATGGAAGCTTCTAGAGCTTCTGAGAAGTTGGCC 1677 Query 1684 TTAGCTGCAATAAAAGCATTGCAAGAGACTGAATATGCTAACAAAATCGAAGACATTAGT 1743 |||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 1678 TTAGCTGCGATAAAAGCGTTGCAAGAGACCGAATATGCTAACAAAATCGAAGACATTAGT 1737 Query 1744 AGTTCTCCAAAAAGCATAATAATTTCAGTGGAGGAATATTATGAGCTAAGCAAGCAAGCA 1803 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1738 AGTTCACCAAGAAGCATAATAATTTCAGTGGAGGAATATTATGAGCTAAGCAAGCAAGCA 1797 Query 1804 CATGAGGTAGAAGAGGCAGCTAATAGAAAACTAGCGGAGATCGTCTCCAAAATCGAGGTG 1863 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 1798 CATGAGGTAGAAGAGGCAGCCAATAGAAAACTAGCGGAGATCGTCTCCAAAATCGAGATG 1857 Query 1864 GCTAAGGAAGAGGAATCAAGAATCTTGGAAAATCTAGAGGAAGTGAGTAGAGAAACAGCT 1923 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1858 GCTAAAGAAGAGGAATCAAGAATCTTGGAAAATCTAGAGGAAGTGAGTAGAGAAACAGCA 1917 Query 1924 ATAAGAAAGGTAGAGCTAAAAGAAGCAATGACAAAAGTTGAGAAAGCTAGAGATGGGAAG 1983 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1918 ATAAGAAAGGTAGAGCTAAAAGAAGCAATGACAAAAGTTGAGAAAGCTAGAGATGGGAAG 1977 Query 1984 GTTGGTATGGATCACGAGTTGCGAAAATGGAGGTCGGATAACGGGAATAGAAGCCCCGAG 2043 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1978 GTTGGTATGGATCACGAGTTGCGAAAATGGAGGTCGGATAACGGGAATAGAAGCCCCGAG 2037 Query 2044 GGAGGAAATAAGGAGAACTTAAGCAAGTCTAAATCGGCTTTGCATCAACCAACAACGTTT 2103 ||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| | ||| Sbjct 2038 GGAGGAAATAAGGAGAACTTAAGCAAGTCCAAATCGGCTTTACATAAACCAACATCATTT 2097 Query 2104 ACATTTGGTGAACAAGCAAGCAGTAGTAATGTGACCCC 2141 |||||||||| |||||||||||||||||||||||||| Sbjct 2098 GCATTTGGTGAGCAAGCAAGCAGTAGTAATGTGACCCC 2135 Score = 130 bits (70), Expect = 5e-29 Identities = 101/115 (88%), Gaps = 6/115 (5%) Strand=Plus/Plus Query 2143 CAAGCAAGCAGTAGTAATGTGACTCCTGAAACTGAAACaaaaaagaaaaaGAAGAGGTTC 2202 ||||||||||||||||||||||| || ||||||| ||||||||||||||||| || Sbjct 2110 CAAGCAAGCAGTAGTAATGTGAC-CC-----CTGAAACTAAAAAGAAAAAGAAGAGATTT 2163 Query 2203 TCTCTGTTACCAAAAGTCTTCATGTTCTTGTCAAGGAAGAAGTCATCCAACAAGT 2257 ||| || | ||||| ||||||||||||||||||||||||||||| |||||||||| Sbjct 2164 TCTTTGCTGCCAAAGGTCTTCATGTTCTTGTCAAGGAAGAAGTCGTCCAACAAGT 2218 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 85055517085 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5