BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45688.1
Length=1429
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473858 jgi|Araly1|473858|fgenesh2_kg.1__3812__AT1G45688.1 2056 0.0
> Ahg473858 jgi|Araly1|473858|fgenesh2_kg.1__3812__AT1G45688.1
Length=1346
Score = 2056 bits (1113), Expect = 0.0
Identities = 1271/1344 (95%), Gaps = 24/1344 (2%)
Strand=Plus/Plus
Query 64 agaaagaaaaaaagCTTCGTGCTCCTTCACCTTCCCAAATCGGAAAACAATGCACGCCAA 123
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 26 AGAAA-AAAAAAAGCTTCGTGCTCCTTCACCTTCCCAAATCGGAAAAAAATGCACGCAAA 84
Query 124 AACCGATTCCGAGGTAACAAGCCTCGCAGCATCATCACCAGCCAGATCTCCACGTAGACC 183
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 85 AACCGATTCCGAGGTAACAAGCCTCGCAGCTTCATCACCAGCCAGATCTCCACGTAGACC 144
Query 184 AGTCTACTACGTCCAATCACCATCACGCGACTCTCACGACGGAGAAAAAACAGCAACATC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 145 AGTCTACTACGTCCAATCACCATCACGCGACTCTCACGACGGAGAAAAAACAGCAACATC 204
Query 244 GTTTCACTCAACTCCAGTACTAAGTCCGATGGGATCTCCACCGCATTCTCACTCATCTAT 303
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 GTTTCACTCAACTCCGGTACTAAGTCCGATGGGATCTCCACCGCATTCTCACTCATCTAT 264
Query 304 GGGTCGTCACTCACGTGAATCATCTTCTAGTCGATTCTCTGGCTCTTTAAAGCCTGGATC 363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 265 GGGTCGTCACTCACGTGAATCATCCTCTAGTCGATTCTCTGGCTCTTTAAAGCCTGGATC 324
Query 364 TAGAAAAGTCAACCCTAACGATGGTTCTAAACGGAAAGGTCACGGCGGTGAGAAACAGTG 423
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 325 TAGAAAAGTCAACCCTAACGATGGTTCTAAACGGAAAGGTCACGGCGGAGAGAAACAGTG 384
Query 424 GAAAGAATGTGCGGTTATTGAAGAAGAAGGTTTGTTAGATGATGGTGATAGAGACGGTGG 483
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 385 GAAAGAATGTGCGGTGATTGAAGAAGAAGGTTTGTTAGATGATGGTGATAGAGACGGTGG 444
Query 484 TGTTCCTCGTCGTTGCTATGTTTTGGCTTTTATCGTTGGATTCTTTATTCTCTTTGGTTT 543
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TGTTCCTCGTCGGTGCTATGTTTTGGCTTTTATCGTTGGATTCTTTATTCTCTTTGGTTT 504
Query 544 CTTCTCTTTGATTCTCTATGGTGCTGCTAAACCT-ATGAAACCTAAGATCACTGTCAAGA 602
|||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||||
Sbjct 505 CTTCTCTTTGATTCTCTATGGTGCTGCTAAACCTCA-GAAACCTAAGATCACTGTTAAGA 563
Query 603 GTATAACATTTGAGACGCTTAAGATCCAAGCTGGTCAAGATGCTGGTGGTGTAGGAACTG 662
||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 564 GTATAACGTTTGAGACACTTAAGGTCCAAGCTGGTCAAGATGCTGGTGGTGTAGGAACCG 623
Query 663 ATATGATCACTATGAACGCGACTTTGAGAATGTTGTATCGAAACACTGGAACTTTCTTTG 722
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 624 ATATGATCACGATGAATGCGACTTTGAGAATGTTGTATCGAAACACTGGGACTTTCTTTG 683
Query 723 GTGTTCATGTTACTTCAACTCCTATTGATCTCAGCTTCTCTCAAATCAAAATCGGTTCCG 782
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 684 GTGTTCATGTTACTTCAACTCCTATTGATCTCAGTTTCTCTCAGATCAAAATCGGTTCTG 743
Query 783 GATCCGTTAAGAAATTTTATCAGGGAAGGAAGAGTGAGAGAACAGTGTTGGTGCATGTGA 842
|||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 744 GATCTGTCAAGAAATTTTATCAGTCAAGGAAGAGTGAGAGAACAGTGGTGGTGCATGTGA 803
Query 843 TCGGAGAGAAGATTCCATTATATGGAAGTGGTTCGACTTTACTTCCACCGGCTCCTCCAG 902
|||||||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 804 TCGGAGAGAAGATTCCTTTATACGGAAGTGGTTCGACTTTACTCCCACCGGCACCTCCAG 863
Query 903 CACCACTTCCTAAACCCAAGAAGAAGAAAGGAGCTCCAGTCCCTATTCCCGACCCGCCCG 962
| |||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||
Sbjct 864 CTCCACTTCCCAAACCAAAGAAGAAGAAAGGAGCTCCCGTCGTTATTCCCGACCCGCCCG 923
Query 963 CACCACCAGCACCGGTACCAATGACGCTCAGCTTTGTCGTCCGATCACGAGCATACGTGT 1022
||||||||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||
Sbjct 924 CACCACCAGCACCGGTACCTATGACGCTCAGCTTTGTTGTCAGATCACGAGCTTACGTGT 983
Query 1023 TGGGGAAGTTAGTGCAGCCAAAGTTCTATAAGAAAATCGAGTGTGACATCAACTTCGAAC 1082
|||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 984 TGGGGAGGCTAGTGCAGCCAAAGTTCTACAAGAAAATCGAGTGTGACATCAACTTCGAAC 1043
Query 1083 ACAAGAATCTTAATAAGCATATAGTCATCACCAAGAATTGCACCGTCACTACAGTTTGAA 1142
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1044 ACAAGAATCTTAATAAGCATATAGCCATCACCAAGAATTGCACCGTCACTACAGTTTGAA 1103
Query 1143 GGAAGGAACAAAAGAAAAAGTAACAAACTTTTTAGTCGGCGCAATACGATGTCGTATAGA 1202
||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 1104 GGAAGGAAC-----------T-------TTT--AGTCGGCGCAATACGATGTCGTATAGA 1143
Query 1203 GTAACGTGATTTTACAGCTCAACGGGCAGCATTTTGGGTTGTTGGGGCAGCCACGTGGAG 1262
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1144 GTAACGTGATTTTACAGCTCAACGGGCAGCATTTTGGGTTGGTGGGGCAGCCACGTGGAG 1203
Query 1263 GTGCCCGAAGAAAAGAAGCATTGTCGGTGGCTTTAATTTACTTGAGTGGTTCATATTTGT 1322
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1204 GTGCCCGAAGGAAAGAAGCATCGTCGGTGGCTTTAATTTACTTGAGTGGTTTATATTTGT 1263
Query 1323 CTGTGGAAAATATATAATTTTATAATTGTGTGTACGATTGGACTGAAAAACACGAGGAAT 1382
||||||||||| ||||||||||||||| |||||||||||| |||||||| ||||||||||
Sbjct 1264 CTGTGGAAAATGTATAATTTTATAATTATGTGTACGATTGCACTGAAAA-CACGAGGAAT 1322
Query 1383 CACATTTTATTTATTTGTTTTTTA 1406
||||||||||||||||||||||||
Sbjct 1323 CACATTTTATTTATTTGTTTTTTA 1346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53440613735
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5