BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G45976.1 Length=1079 Score E Sequences producing significant alignments: (Bits) Value Ahg473860 jgi|Araly1|473860|fgenesh2_kg.1__3814__AT1G45976.1 1587 0.0 > Ahg473860 jgi|Araly1|473860|fgenesh2_kg.1__3814__AT1G45976.1 Length=1050 Score = 1587 bits (859), Expect = 0.0 Identities = 988/1050 (94%), Gaps = 9/1050 (1%) Strand=Plus/Plus Query 37 AAGTTCATCAATGGCTCTTCATCCACACCTTCAAGACTCCAAGAATTTCAGAGACTTTTG 96 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGTTCATCGATGGCTCTTCATCCACACCTTCAAGACTCCAAGAATTTCAGAGACTTTTG 60 Query 97 CGGAATCGACGGCCAGATTTCGCCGGAATTAGGATTTAACCGCTCAGAGAATCTCCATGA 156 ||||||||||||||||||||||||||||||||| ||| | ||| | |||||||||||| Sbjct 61 CGGAATCGACGGCCAGATTTCGCCGGAATTAGGGTTTGATAACTCTGCGAATCTCCATGA 120 Query 157 TCAATCTCAGCATCCTCCATATATTCCTCCATTTCATGTTGCTGGTTTTGCACCGGGACC 216 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 121 TCAATCTCAGCATCCTCCGTATATTCCTCCATTTCATGTTGCTGGTTTTGCACCGGGACC 180 Query 217 GGTGGTTCAAATTGATGGTTCTGATGGTGGTAATGGAGCTGACTTTGAGTGGAACTATGG 276 || |||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 181 AGTTGTTCAAATTGATGGTTCTGATGGTGGTAATGGAGCTGAGTTAGAGTGGAACTATGG 240 Query 277 TCTTGGTCTTGAACCAAGACGTGAGAGGATAAAGGAACAAGATTTCTTGGAAAACAATTC 336 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 241 TCTTGGTCTTGAACCAAGACGTGAGAGGATAAAGGAACAAGATTTTTTGGAGAACAATTC 300 Query 337 TCAGATATCTTCTATTGATTTTTTGCAAGCTCGGTCTGTATCAACCGGATTGGGTCTGTC 396 ||||||||||||||||||||||| |||||||||||||||||||||||||||||| || || Sbjct 301 TCAGATATCTTCTATTGATTTTTGGCAAGCTCGGTCTGTATCAACCGGATTGGGACTTTC 360 Query 397 TCTTGACAATGCTCGTGTCGCTTCTTCTGATGGCTCTGCGTTGTTGTCGCTTGTTGGAGA 456 |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| Sbjct 361 TCTTGACAATGCTCGTATCGCTTCTTCTGATGGCTCTGCTTTGTTGTCGCTTGTTGGAGA 420 Query 457 CGATATTGATCGCGAGTTACAGCGGCAAGATGCAGATATCGATAGGTTTCTCAAGATTCA 516 |||||||||||| ||||| ||| |||| ||||||||||||||||||||||| |||||||| Sbjct 421 CGATATTGATCGAGAGTTGCAGAGGCAGGATGCAGATATCGATAGGTTTCTTAAGATTCA 480 Query 517 GGGGGATCAGTTACGGCATGCTATCCTCGACAAGATCAAGAGGGGTCAACAGAAAACGGT 576 |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| || Sbjct 481 GGGGGACCAGTTACGGCATGCTATCCTCGACAAGATCCAGAGGGGTCAACATAAAACAGT 540 Query 577 GTCACTAATGGAGGAAAAAGTTGTTCAGAAACTCCGTGAGAAAGATGAGGAGCTAGAGAG 636 |||||| ||||||||||||||| | |||||||||||||||||||||||||| ||||||| Sbjct 541 GTCACTCATGGAGGAAAAAGTTATCCAGAAACTCCGTGAGAAAGATGAGGAACTAGAGAT 600 Query 637 GATAAACCGAAAGAACAAGGAACTCGAGGTGCGAATGGAACAGCTGACAATGGAAGCTGA 696 ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| Sbjct 601 GATAAACCGAAAGAACAAGGAGCTCGAGGTGCGTATGGAACAGCTAACAATGGAAGCTGA 660 Query 697 GGCATGGCAGCAACGTGCAAAGTACAACGAGAATATGATTGCTGCACTCAACTACAATCT 756 ||||||||| |||||||||| |||||||||||| ||||| |||||||||||||||||||| Sbjct 661 GGCATGGCAACAACGTGCAAGGTACAACGAGAACATGATCGCTGCACTCAACTACAATCT 720 Query 757 TGACCGAGCTCAAGGTCGGCCAAGAGATAGCATTGAAGGATGTGGAGACAGTGAAGTAGA 816 ||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 721 TGAACGAGCTCAAGGTCGACCAAGAGATAGCATTGAAGGATGTGGAGACAGCGAAGTAGA 780 Query 817 TGACACAGCTTCTTGCTTCAATGG--G--A-GA-GAC---AACAGCAACAATAACACGAA 867 |||||||||||||||||||||||| | | | || |||| ||||||||||||||| Sbjct 781 TGACACAGCTTCTTGCTTCAATGGCAGAAACAACAACAATAACAACAACAATAACACGAA 840 Query 868 GACGATGATGATGTGCAGGTTTTGTGGAGTGAGAGAAATGTGTATGTTGTTGTTGCCATG 927 | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 841 GCCGATGATGATGTGCAGGTTTTGTGGAGTGAGAGAAGTGTGTATGTTGTTGTTGCCATG 900 Query 928 TAATCATATGTGTTTGTGTAAGGAGTGTGAGAGGAAGCTTAGCTCTTGTCCTTTGTGTCA 987 ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 901 TAAGCATATGTGTTTGTGTAAGGAGTGTGAGAGGAAGCTTAGCTCCTGTCCTTTGTGTCA 960 Query 988 GTCTTCTAAGTTTCTAGGTATGGAAGTATACATGTGATTGTGATTTGACTAAACTAATGT 1047 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 961 GTCTTCTAAGTTTCTAGGTATGGAAGTATACATGTGATTGTGATTTGACTAAACTAATGT 1020 Query 1048 CTAATTAGTTAACAAACGAACTTTATTTGT 1077 ||||||||||||| |||||||| ||||||| Sbjct 1021 CTAATTAGTTAACGAACGAACTCTATTTGT 1050 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40181554518 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5