BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G45976.1
Length=1079
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473860 jgi|Araly1|473860|fgenesh2_kg.1__3814__AT1G45976.1 1587 0.0
> Ahg473860 jgi|Araly1|473860|fgenesh2_kg.1__3814__AT1G45976.1
Length=1050
Score = 1587 bits (859), Expect = 0.0
Identities = 988/1050 (94%), Gaps = 9/1050 (1%)
Strand=Plus/Plus
Query 37 AAGTTCATCAATGGCTCTTCATCCACACCTTCAAGACTCCAAGAATTTCAGAGACTTTTG 96
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGTTCATCGATGGCTCTTCATCCACACCTTCAAGACTCCAAGAATTTCAGAGACTTTTG 60
Query 97 CGGAATCGACGGCCAGATTTCGCCGGAATTAGGATTTAACCGCTCAGAGAATCTCCATGA 156
||||||||||||||||||||||||||||||||| ||| | ||| | ||||||||||||
Sbjct 61 CGGAATCGACGGCCAGATTTCGCCGGAATTAGGGTTTGATAACTCTGCGAATCTCCATGA 120
Query 157 TCAATCTCAGCATCCTCCATATATTCCTCCATTTCATGTTGCTGGTTTTGCACCGGGACC 216
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCAATCTCAGCATCCTCCGTATATTCCTCCATTTCATGTTGCTGGTTTTGCACCGGGACC 180
Query 217 GGTGGTTCAAATTGATGGTTCTGATGGTGGTAATGGAGCTGACTTTGAGTGGAACTATGG 276
|| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 181 AGTTGTTCAAATTGATGGTTCTGATGGTGGTAATGGAGCTGAGTTAGAGTGGAACTATGG 240
Query 277 TCTTGGTCTTGAACCAAGACGTGAGAGGATAAAGGAACAAGATTTCTTGGAAAACAATTC 336
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 241 TCTTGGTCTTGAACCAAGACGTGAGAGGATAAAGGAACAAGATTTTTTGGAGAACAATTC 300
Query 337 TCAGATATCTTCTATTGATTTTTTGCAAGCTCGGTCTGTATCAACCGGATTGGGTCTGTC 396
||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||
Sbjct 301 TCAGATATCTTCTATTGATTTTTGGCAAGCTCGGTCTGTATCAACCGGATTGGGACTTTC 360
Query 397 TCTTGACAATGCTCGTGTCGCTTCTTCTGATGGCTCTGCGTTGTTGTCGCTTGTTGGAGA 456
|||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||
Sbjct 361 TCTTGACAATGCTCGTATCGCTTCTTCTGATGGCTCTGCTTTGTTGTCGCTTGTTGGAGA 420
Query 457 CGATATTGATCGCGAGTTACAGCGGCAAGATGCAGATATCGATAGGTTTCTCAAGATTCA 516
|||||||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||||||
Sbjct 421 CGATATTGATCGAGAGTTGCAGAGGCAGGATGCAGATATCGATAGGTTTCTTAAGATTCA 480
Query 517 GGGGGATCAGTTACGGCATGCTATCCTCGACAAGATCAAGAGGGGTCAACAGAAAACGGT 576
|||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| ||
Sbjct 481 GGGGGACCAGTTACGGCATGCTATCCTCGACAAGATCCAGAGGGGTCAACATAAAACAGT 540
Query 577 GTCACTAATGGAGGAAAAAGTTGTTCAGAAACTCCGTGAGAAAGATGAGGAGCTAGAGAG 636
|||||| ||||||||||||||| | |||||||||||||||||||||||||| |||||||
Sbjct 541 GTCACTCATGGAGGAAAAAGTTATCCAGAAACTCCGTGAGAAAGATGAGGAACTAGAGAT 600
Query 637 GATAAACCGAAAGAACAAGGAACTCGAGGTGCGAATGGAACAGCTGACAATGGAAGCTGA 696
||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||
Sbjct 601 GATAAACCGAAAGAACAAGGAGCTCGAGGTGCGTATGGAACAGCTAACAATGGAAGCTGA 660
Query 697 GGCATGGCAGCAACGTGCAAAGTACAACGAGAATATGATTGCTGCACTCAACTACAATCT 756
||||||||| |||||||||| |||||||||||| ||||| ||||||||||||||||||||
Sbjct 661 GGCATGGCAACAACGTGCAAGGTACAACGAGAACATGATCGCTGCACTCAACTACAATCT 720
Query 757 TGACCGAGCTCAAGGTCGGCCAAGAGATAGCATTGAAGGATGTGGAGACAGTGAAGTAGA 816
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 721 TGAACGAGCTCAAGGTCGACCAAGAGATAGCATTGAAGGATGTGGAGACAGCGAAGTAGA 780
Query 817 TGACACAGCTTCTTGCTTCAATGG--G--A-GA-GAC---AACAGCAACAATAACACGAA 867
|||||||||||||||||||||||| | | | || |||| |||||||||||||||
Sbjct 781 TGACACAGCTTCTTGCTTCAATGGCAGAAACAACAACAATAACAACAACAATAACACGAA 840
Query 868 GACGATGATGATGTGCAGGTTTTGTGGAGTGAGAGAAATGTGTATGTTGTTGTTGCCATG 927
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 GCCGATGATGATGTGCAGGTTTTGTGGAGTGAGAGAAGTGTGTATGTTGTTGTTGCCATG 900
Query 928 TAATCATATGTGTTTGTGTAAGGAGTGTGAGAGGAAGCTTAGCTCTTGTCCTTTGTGTCA 987
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 901 TAAGCATATGTGTTTGTGTAAGGAGTGTGAGAGGAAGCTTAGCTCCTGTCCTTTGTGTCA 960
Query 988 GTCTTCTAAGTTTCTAGGTATGGAAGTATACATGTGATTGTGATTTGACTAAACTAATGT 1047
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GTCTTCTAAGTTTCTAGGTATGGAAGTATACATGTGATTGTGATTTGACTAAACTAATGT 1020
Query 1048 CTAATTAGTTAACAAACGAACTTTATTTGT 1077
||||||||||||| |||||||| |||||||
Sbjct 1021 CTAATTAGTTAACGAACGAACTCTATTTGT 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40181554518
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5