BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G46264.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473862 jgi|Araly1|473862|fgenesh2_kg.1__3816__AT1G46264.1 1827 0.0
> Ahg473862 jgi|Araly1|473862|fgenesh2_kg.1__3816__AT1G46264.1
Length=1203
Score = 1827 bits (989), Expect = 0.0
Identities = 1146/1216 (94%), Gaps = 33/1216 (3%)
Strand=Plus/Plus
Query 1 AAACAAACACAAAtctcttctctttt-tctctctctctgtctctctctttctcgaactct 59
||||||||||||| |||||||||||| ||||||||||| ||||| ||| |||||||||||
Sbjct 1 AAACAAACACAAAGCTCTTCTCTTTTCTCTCTCTCTCTCTCTCTTTCTCTCTCGAACTCT 60
Query 60 ctAATGGCGATGATGGTCGAGAATAGCTACGGTGGTTACGGTGGTGGCGGCGGAGAGAGG 119
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||
Sbjct 61 CTAATGGCGATGATGGTTGAGAATAGCTACGGTGGTTACGGTGGTGGTAACGGAGAAAGG 120
Query 120 ATACAACTTATGGTCGAAGGTCAAGGCAAAGCTGTTCCGGCTCCGTTTTTGACAAAGACT 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 ATACAACTTATGGTCGAAGGTCAAGGCAAAGCTGTTCCGGCACCGTTTTTGACAAAGACT 180
Query 180 TATCAACTTGTTGATGATCCTGCGACGGATCATGTCGTTTCTTGGGGTGATGATGATACT 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATCAACTTGTTGATGATCCTGCGACGGATCATGTCGTTTCTTGGGGTGATGATGATACT 240
Query 240 ACTTTTGTCGTTTGGCGTCCACCGGAGTTTGCTCGTGATCTTCTTCCTAATTACTTTAAA 299
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 ACTTTTGTTGTTTGGCGTCCACCGGAGTTTGCTCGTGACCTTCTTCCTAATTACTTTAAA 300
Query 300 CATAACAACTTCTCTAGCTTCGTTCGTCAGCTCAATACTTATGGTTTCAGAAAGATTGTA 359
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CATAACAACTTCTCTAGCTTCGTTCGTCAGCTCAACACTTATGGTTTCAGAAAGATTGTA 360
Query 360 CCAGATCGATGGGAGTTCGCGAACGAGTTTTTCAAGAGAGGAGAGAAACATTTACTCTGC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CCAGATCGATGGGAGTTCGCGAACGAGTTTTTCAAGAGAGGAGAGAAACATTTACTCTGC 420
Query 420 GAAATCCACCGCCGTAAAACATCTCAAATGATACCACAACAACACTCTCCGTTCATGTCA 479
|||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 GAAATCTACCGCCGCAAAACATCTCAAATGATACCACAACAACACTCTCCATTCATGTCA 480
Query 480 CACCACCACGCTCCGCCGCAGATTCCATTCTCCGGCGGTTCTTTCTTCCCATTACCACCA 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CACCACCACGCTCCGCCGCAGATTCCATTCTCCGGCGGTTCTTTCTTCCCATTACCACCA 540
Query 540 CCACGTGTCACCACTCCAGAAGAAGACCATTACTGGTGCGACGACTCACCACCGTCAAGA 599
| | ||||||||||||||||||||| ||||||||||| ||| |||||||||||||||
Sbjct 541 C-A--TGTCACCACTCCAGAAGAAGATCATTACTGGTGTGAC---TCACCACCGTCAAGA 594
Query 600 CCACGAGTCATACCAC-A-A--CAA--A---TTGACACGGCGGCGCAAGTAACGGCATTG 650
||| |||||||||||| | | ||| | |||||||||||||||||||||| ||||||
Sbjct 595 CCAAGAGTCATACCACCACAAACAACCACCATTGACACGGCGGCGCAAGTAACAGCATTG 654
Query 651 AGTGAAGACAACGAGAGATTACGACGAAGCAACACAGTGTTAATGTCGGAACTAGCTCAC 710
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 655 AGTGAAGACAACGAGAGATTACGACGAAGCAACACAGTGTTAATGTCTGAACTAGCTCAC 714
Query 711 ATGAAGAAACTCTACAACGACATTATCTACTTTGTTCAAAACCATGTCAAGCCTGTTGCT 770
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 715 ATGAAGAAACTCTACAACGACATTATCTACTTTGTTCAAAATCATGTCAAGCCTGTTGCT 774
Query 771 CCAAGTAACAACTCTAGTTATCTCTCTTCATTTCTCCAGAAGCAACAACAACAACAACCT 830
||||||||| |||| ||||||||||||||||||||||| | |||||||||||||||
Sbjct 775 CCAAGTAAC---TCTAACTATCTCTCTTCATTTCTCCAGAA--A-CAACAACAACAACCT 828
Query 831 CCAACACTTGATTATTACAATACTGCCACTGTCAATGCCACTAATCTCAATGCTTTGAAC 890
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 829 CCAACACTTGATTATTACAATACTGCCACTGTCAATGCCACTAATCTCCATGCTTTGAAC 888
Query 891 TCATCTCCACCAACTTCACAAAGCTCTATTACAGTTCTTGAAGATGATCAC-ACTAATCA 949
||||||||||||||||||||||||||||||||||||||||||||||| ||| | | ||||
Sbjct 889 TCATCTCCACCAACTTCACAAAGCTCTATTACAGTTCTTGAAGATGA-CACTAATCATCA 947
Query 950 TCATGATCAGAGTAATATGAGAAAGACAAAGCTTTTTGGAGTTTCGTTGCCTTCTTCTAA 1009
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 948 TCATGATCAGAGTAATATGAGAAAGACAAAGCTTTTTGGAGTTTCATTGCCTTCTTCTAA 1007
Query 1010 GAAGAGATCACATCATTTCTCAGACCAAACAAGCAAAACGAGACTTGTGTTGGATCAGTC 1069
||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||
Sbjct 1008 GAAGAGATCACATCATTTCTCAGACCAAACAAGCAAAACTCGACTTGTGTTGGATAAATC 1067
Query 1070 TGATCTTGCTTTGAATCTCATGACTGCTTCTACACGTTAAGAGAGTGTCTTTGTTTTATT 1129
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1068 TGATCTTGCTTTGAATCTCATGACTGCTTCTACACGTTAAGAGAGAGTCTTTGTTTTTTT 1127
Query 1130 TTTGAT--AA-GTATC----T-A-TCAGCATTATTAGCACTAATGTTGTTATGATGAAGA 1180
||| | || ||||| | | ||||||||||||||||||||||||||||||||||||
Sbjct 1128 TTTTTTTGAAAGTATCAGAATCAGTCAGCATTATTAGCACTAATGTTGTTATGATGAAGA 1187
Query 1181 TGAATATTCTGGTTAA 1196
|||||||| |||||||
Sbjct 1188 TGAATATTATGGTTAA 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5