BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G46480.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922992 jgi|Araly1|922992|scaffold_104273.1 1254 0.0
> Ahg922992 jgi|Araly1|922992|scaffold_104273.1
Length=799
Score = 1254 bits (679), Expect = 0.0
Identities = 759/799 (95%), Gaps = 0/799 (0%)
Strand=Plus/Plus
Query 78 TTTGCTAGTTTTAACATATAGCAATGAAGGTTCATGAGTTTTCGAATGGGTTTTCTTCAT 137
||||||| || ||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1 TTTGCTAATTAAAACATATAGCAATGAAGGTTCATGAGTTTTCTAATGGATTTTCTTCTT 60
Query 138 CGTGGGATCAACATGACTCGACATCATCCCTTAGCCTAAGCTGCAAACGcctccgtcctc 197
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 61 CGTGGGATCAACATGACTCGGCATCATCCCTTAGCCTAAGCTGCAAACGCCTCCGTCCTC 120
Query 198 tcgcccctaagctctccggcagccctccctcccctccttcttcttcctccGGCGTCACTT 257
||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 TCGCCCCGAAGCTTTCCGGCAGCCCTCCCTCCCCTCCTTCTTCTTCCTCTGGCGTCACTT 180
Query 258 CAGCCACTTTTGACCTTAAAAACTTCATTAGACCCGATCAAACCGGTCCGACAAAATTTG 317
| |||||||||||||| |||| |||||||||||| |||| || |||||||||||||||||
Sbjct 181 CCGCCACTTTTGACCTCAAAAGCTTCATTAGACCTGATCTAATCGGTCCGACAAAATTTG 240
Query 318 AACACAAACGAGACCCTCCTCATCAATTGGAGACGCACCCGGGAGGGACAAGGTGGAACC 377
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AACACAAACGAGACCCTCCTCATCAATTGGAGACGCACCCGGGAGGGACAAGGTGGAACC 300
Query 378 CGACTCAAGAACAGATAGGGATACTTGAGATGTTGTACAAAGGTGGAATGCGTACTCCTA 437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 CGACTCAAGAACAGATAGGGATACTTGAGATGTTGTACAAAGGTGGAATGCGTACTCCTA 360
Query 438 ATGCTCAACAGATTGAGCATATCACATTGCAACTCGGTAAGTACGGGAAAATCGAAGGGA 497
| ||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 361 ACGCTCAACAGATCGAGCATATCACATCGCAACTCGGCAAGTACGGGAAAATCGAAGGGA 420
Query 498 AAAATGTGTTCTATTGGTTCCAGAACCACAAAGCCCGCGAGAGACAGAAGCAGAAGAGGA 557
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AGAATGTGTTTTACTGGTTCCAGAACCACAAAGCCCGCGAGAGACAGAAGCAGAAGAGGA 480
Query 558 ACAACCTCATCAGCCTAAGTTGCCAAAGCAGCTTCACGACCACTGGTGTCTTTAATCCGA 617
||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||
Sbjct 481 ACAACCTCATCAGCCTAAGTTGCCAAAGCAGCTTCACGACCACTGGTATCTCTAACCCGA 540
Query 618 GTGTAACTATGAAGACAAGAACATCATCGTCACTAGACATTATGAGAGAACCAATGGTGG 677
||||| | | |||||||||||| ||||||||||||||||| | ||||||| ||||||||
Sbjct 541 GTGTAGCAACGAAGACAAGAACTTCATCGTCACTAGACATCAGGAGAGAATTAATGGTGG 600
Query 678 AGAAGGAGGAGTTAGTGGAAGAGAATGAGTACAAGAGGACATGTAGGAGCTGGGGATTTG 737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGAAGGAGGAGTTAGTGGAAGAGAATGAGTACAAGAGGACATGTAGGAGCTGGGGATTTG 660
Query 738 AGAACTTGGAGATAGAGAACAGGAGAAACAAAAATAGTAGTACTATGGCAACTACTTTTA 797
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||
Sbjct 661 AGAACTTGGAGATAGAGAACAGAAGAAACAAAAATAGTAGTACTATGGCAACTACTATTA 720
Query 798 ATAAAATCATTGACAATGTAACCCTCGAGCTTTTTCCTCTCCATCCTGAAGGGAGATGAA 857
|||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||
Sbjct 721 ATAAAATCATTGACAATGTAACCCTCGAGCTTTTTCCTCTGCACCCTGAAGGTAGATGAA 780
Query 858 GTCATGAAGGTGAGGCAGA 876
||||||||| |||||||||
Sbjct 781 GTCATGAAGATGAGGCAGA 799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5