BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G46768.1
Length=836
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922994 jgi|Araly1|922994|scaffold_104275.1 739 0.0
> Ahg922994 jgi|Araly1|922994|scaffold_104275.1
Length=511
Score = 739 bits (400), Expect = 0.0
Identities = 474/511 (93%), Gaps = 0/511 (0%)
Strand=Plus/Plus
Query 8 CCCAAAAGTTTGTCTTTTATCAATGGAAAGAGAACAAGAAGAGTCTACGATGAGAAAGAG 67
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 CCCAAAAGTTTGTCTTTTATCAATGGAAAGAGAACAAGAAGAGTCTACGATGCGAAAGAG 60
Query 68 AAGGCAGCCACCTCAAGAAGAAGTGCCTAACCACGTGGCTACAAGGAAGCCGTACAGAGG 127
|||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||
Sbjct 61 AAGGCAGCCACCTCAAGAAGAAATGGCTAGCCACGTGGCTACAAGGAAGCCGTACAGAGG 120
Query 128 GATACGGAGGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGTGAGCCTAACAAACGCTC 187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 GATACGGAGGAGGAAGTGGGGCAAGTGGGTGGCTGAGATTCGTGAGCCTAACAAACGTTC 180
Query 188 ACGGCTTTGGCTTGGCTCTTACACAACCGATATCGCCGCCGCTAGAGCCTACGACGTGGC 247
||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||||| ||
Sbjct 181 ACGTCTTTGGCTCGGCTCATACACAACCGATGTCGCCGCCGCTAGAGCCTACGACGTCGC 240
Query 248 CGTCTTCTACCTCCGTGGCCCCTCCGCACGTCTCAACTTCCCTGATCTTCTCTTGCAAGA 307
||||||||||||||||||||||||||| || ||||||||||| ||||||||||| |||||
Sbjct 241 CGTCTTCTACCTCCGTGGCCCCTCCGCGCGCCTCAACTTCCCCGATCTTCTCTTACAAGA 300
Query 308 AGAGGACCATCTCTCAGCCGCCACCACCGCTGACATGCCCGCAGCTCTTATAAGGGAAAA 367
|| ||||| | ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 301 GGATGACCACCGATCAGCCGCCACCACCGCGGACATGCCCGCAGCTCTTATTCGGGAAAA 360
Query 368 AGCGGCGGAGGTCGGCGCCAGAGTCGACGCTCTTCTAGCTTCTGCCGCTCCTTCGATGGC 427
|||||||| |||||||| |||||||||||||| || ||||| || |||||||||| |||
Sbjct 361 GGCGGCGGAAGTCGGCGCTAGAGTCGACGCTCTCCTTGCTTCCGCTGCTCCTTCGACGGC 420
Query 428 TCACTCCACTCCGCCGGTAATAAAACCCGACTTGAATCAAATACCCGAATCCGGAGATAT 487
| ||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 421 TGACTCCTCTCGGCCGGTAATAAAACCCGATTTGAATCAAATACCCGAATCCGGAGATAT 480
Query 488 ATAGTCAATTTATATACATGTAGTTTGTTTT 518
|||||||| ||||| || |||||||||||||
Sbjct 481 ATAGTCAAATTATACACTTGTAGTTTGTTTT 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30917685687
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5