BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47056.1
Length=1557
Score E
Sequences producing significant alignments: (Bits) Value
Ahg922996 jgi|Araly1|922996|scaffold_104277.1 2416 0.0
> Ahg922996 jgi|Araly1|922996|scaffold_104277.1
Length=1603
Score = 2416 bits (1308), Expect = 0.0
Identities = 1484/1568 (95%), Gaps = 16/1568 (1%)
Strand=Plus/Plus
Query 1 ATGGGCCAATCAACCTCCGCCGCCGGAAATTCCATCCTCAATCGACGACGAAGCAAATCG 60
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 21 ATGGGCCAATCAACCTCCGCCGCCGGTAATTCCATCCTCAATCGACGACGAAGCAAATCG 80
Query 61 TTTACACTGAAATTCCCGATTGAATC---AATCGAATCTGAGATTTCACAACCTGACTAC 117
||| | |||||||| ||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 81 TTTTCTCTGAAATTTCCGATGGAATCGATAATCGAATCTGAGATTTCTCAACCTGACTAC 140
Query 118 ACATCGAGTTTACCTGACGAGTGCTTAGCTTTGGTGTTCCAGTTCTTAAACTCCGGTAAT 177
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 141 ACATCGTGTTTACCTGACGAGTGCTTAGCTTTGGTGTTCCAGTTCTTAAACTCCGGTAAT 200
Query 178 CGGAAAAGATGTGCTCTGGTTTGTCGTCGGTGGATGATCGTCGAAGGACAGAATCGTTAC 237
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 201 CGGAAAAGATGTGCTTTGGTTTGTCGACGGTGGATGATCGTTGAAGGACAGAATCGTTAC 260
Query 238 CGTCTTTCTCTCCACGCTCGCTCAGATCTGATTACTTCGATTCCTTCTCTCTTCTCTCGA 297
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 261 CGTCTTTCTCTCCACGCTCGTTCTGATCTGATTACTTCGATTCCTTCTATCTTCTCTCGA 320
Query 298 TTCGATTCCGTTACTAAGCTTTCGTTGAAATGCGATCGTAGATCTGTTAGTATCGGCGAC 357
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 321 TTCGATTCCGTTACTAAGCTTTCGTTGAAATGCGATCGTAGATCTGTGAGTATCGGCGAC 380
Query 358 GAAGCGCTTGTTAAGATCTCTCTCCGGTGTAGGAATTTGAAGAGACTTAAGCTTAGAGCT 417
|||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 381 GAAGCGCTTGTTAAAATCTCTCTCCGGTGTCGGAATTTGAAGAGACTTAAGCTTAGAGCT 440
Query 418 TGCCGTGAGCTCACCGATGTAGGTATGGCTGCTTTTGCTGAGAATTGTAAGGATTTGAAG 477
||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 441 TGCCGTGAGCTTACCGATGTAGGTATGGCTGCTTTTGCTGAGAATTGTAAAGATTTGAAG 500
Query 478 ATATTCTCTTGTGGTTCTTGTGATTTTGGAGCTAAAGGTGTGAAAGCTGTGCTTGATCAT 537
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 ATTTTCTCTTGTGGATCTTGTGATTTTGGAGCTAAAGGTGTGAAAGCTGTGCTTGATCAT 560
Query 538 TGCTCGAATCTCGAGGAGTTATCGATTAAGCGTCTCCGTGGATTCACCGATATAGCTCCG 597
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 561 TGCTCGAATCTCGAGGAGTTATCGATTAAGCGGCTCCGTGGATTCACCGATATAGCTCCG 620
Query 598 GAGATGATTGGTCCTGGTGTTGCTGCTTCGTCTCTTAAGTCGATTTGCTTGAAGGAGCTT 657
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 621 GAGTTGATTGGTCCTGGTGTTGCTGCTTCGTCTCTTAAGTCGATTTGCTTGAAGGAGCTT 680
Query 658 TATAATGGTCAGTGTTTCGGTCCTGTGATCGTTGGTGCGAAGAATCTTAAGTCTCTGAAG 717
||||||||||| ||||||||||| ||||| ||||||||||||||||||| |||| |||||
Sbjct 681 TATAATGGTCAATGTTTCGGTCCGGTGATTGTTGGTGCGAAGAATCTTAGGTCTTTGAAG 740
Query 718 CTTTTTAGGTGTTCTGGTGATTGGGACTTGCTTCTT-CAAGAGATGTCTGGTAAGGATCA 776
|||||||||||||||||||| |||||||||||| || ||||||||| ||| |||||||||
Sbjct 741 CTTTTTAGGTGTTCTGGTGACTGGGACTTGCTT-TTACAAGAGATGGCTGTTAAGGATCA 799
Query 777 TGGTGTAGTGGAGATACATTTGGAACGTATGCAAGTTAGTGATGTAGCT-TTATCTGCGA 835
|||| |||||||||||||||||||||| |||||||| || ||||||||| ||| ||||||
Sbjct 800 TGGTATAGTGGAGATACATTTGGAACGGATGCAAGTGAGCGATGTAGCTCTTA-CTGCGA 858
Query 836 TATCGTATTGCTCGAGTCTCGAGAGTTTGCATCTTGTGAAGACACCTGAATGCACGAATT 895
||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||
Sbjct 859 TATCGAATTGCTCGAGTCTCGAGATTTTGCATCTTGTGAAGACACCGGAATGCACGAATT 918
Query 896 TCGGATTAGCTGCGATTGCAGAGAAGTGCAAGCGTTTGAGGAAGCTTCATATTGATGGAT 955
|||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||
Sbjct 919 TCGGATTAGCTGCGATTGCAGAGAAGTGTAAGCATTTGAGAAAGCTTCATATCGATGGAT 978
Query 956 GGAAAGCGAATTTGATTGGTGATGAAGGGCTTGTGGCTGTGGCTAAGTTTTGTTCTCAGT 1015
||||||||||||||||||| || |||||||||||||||||||||| ||||||||||||||
Sbjct 979 GGAAAGCGAATTTGATTGGGGACGAAGGGCTTGTGGCTGTGGCTAGGTTTTGTTCTCAGT 1038
Query 1016 TACAGGAACTGGTACTGATTGGAGTGAATCCAACGACACTTAGTTTAGGAATGTTGGCTG 1075
|||||||| | |||||||||||||||||||| ||||| || |||||||||||||||||||
Sbjct 1039 TACAGGAATTAGTACTGATTGGAGTGAATCCGACGACGCTAAGTTTAGGAATGTTGGCTG 1098
Query 1076 CGAAATGTTTGAATCTTGAAAGATTGGCACTTTGTGGTTGTGATACGTTTGGTGATCCTG 1135
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1099 CGAAATGTCTGAATCTTGAAAGATTGGCACTTTGTGGTTGTGATACGTTTGGTGATCCTG 1158
Query 1136 AGCTTTCTTGTATCGCAGCGAAATGTCCGGCTTTAAGGAAATTGTGTATCAAGAACTGTC 1195
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1159 AGCTTTCTTGTATTGCAGCGAAATGTCCGGCTTTAAGGAAATTATGTATCAAGAACTGTC 1218
Query 1196 CGATTTCGGATGTGGGAATCGAGAATCTTGCAAACGGATGTCCTGGTTTAACCAAAGTGA 1255
| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1219 CAATTTCGGATGTGGGAATCGAGAATCTTGCAAACGGATGCCCAGGTTTAACCAAAGTGA 1278
Query 1256 AAATCAAGAAGTGCAAAGGAGTAT-TGGGAGGGTGCGCAGACTGGTTAAGAACAGTTAGG 1314
|||||||||| ||||||||||| | |||| |||||||| |||||||||||||| ||||||
Sbjct 1279 AAATCAAGAAATGCAAAGGAGT-TCTGGGCGGGTGCGCTGACTGGTTAAGAACGGTTAGG 1337
Query 1315 CCTATGCTTTCGGTGAACGCAGACACCATGGAACAAGAACATGAAGAAGCAGCAAGCAAT 1374
||||||||||||||||||||||||||| |||||| ||||||| |||||| ||||||||||
Sbjct 1338 CCTATGCTTTCGGTGAACGCAGACACCGTGGAACCAGAACATCAAGAAGAAGCAAGCAAT 1397
Query 1375 GATG-TTGTAGGAGGATCGCAAGAAAACGGAATCGAATTCCCTCAATTGAACAGTCAGAT 1433
|||| || ||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1398 GATGCTT-TAGGAGGATTGCAAGAAAACGGAATCGAATTCCCTCAATTGAACAGCCAGAT 1456
Query 1434 CATGGCATCAAGCATTGCATCAAGTAGTAGAA-A--CCGGTCAGGGTATTTCAAATCAGG 1490
||||||| |||||||||||||||| ||||||| | ||||||||||||||||||||||||
Sbjct 1457 CATGGCACCAAGCATTGCATCAAGCAGTAGAAGAAGCCGGTCAGGGTATTTCAAATCAGG 1516
Query 1491 CATTGGATTGTTCAGCGGAATGAGTCTAGT-GCCTTGCACTTCGAGACAACGACGGGCAA 1549
||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1517 CATTGGACTGTTCAGCGGAATGAGTCTAGTAGC-TTGCACTTCGAGACAACGACGGGCAA 1575
Query 1550 GCAGGTGA 1557
||||||||
Sbjct 1576 GCAGGTGA 1583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58316165095
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5