BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47200.1
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473867 jgi|Araly1|473867|fgenesh2_kg.1__3821__AT1G47200.1 808 0.0
> Ahg473867 jgi|Araly1|473867|fgenesh2_kg.1__3821__AT1G47200.1
Length=641
Score = 808 bits (437), Expect = 0.0
Identities = 513/549 (93%), Gaps = 8/549 (1%)
Strand=Plus/Plus
Query 93 AAATGGCAGAAACCGCCGAGACAATCAACACCACGATCTCATCGCCGCCACCGGAATCCG 152
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 AAATGGCAGAAACCTCCGAGACAATCACCACCACGATCTCATCGCCGCCACCGGAATCCG 60
Query 153 AAAGCTCCACCACTATT-TCTGCAATGACAGATCCAACATCTCAAGAAGCAGCCTCAAAA 211
||||||||||||| ||| ||| |||||||||| ||||||||||||||| |||||||| |
Sbjct 61 AAAGCTCCACCAC-ATTATCTACAATGACAGACCCAACATCTCAAGAATTAGCCTCAAGA 119
Query 212 GACACAGATCTGACGAAAGAAGCCGAATCAGAGAAGAAACCAGGAGGAATCTCTCTCCGA 271
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 120 GACACAGATCTGACGAAAGAAGCCGAATCAGAGAAGAAACCCGGAGGAATCTCTCTCCGA 179
Query 272 ATCTGGCCACCGACTCAGAAAACTCGCGACGCCGTTC-TGAATCGCCTGATCGAGACCTT 330
|||||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||
Sbjct 180 ATCTGGCCACCGACTCAGAAAACTCGCGACGCCG-TCTTGAATCGCCTAATCGAGACTTT 238
Query 331 ATCCACCGAATCAATCCTCTCTAAGAGATACGGTACTCTTAAATCTGACGATGCAACCAC 390
|||||||||||| |||||||||||||||||||| |||||||| || || || || |||||
Sbjct 239 ATCCACCGAATCTATCCTCTCTAAGAGATACGGAACTCTTAATTCCGATGAAGCCACCAC 298
Query 391 CGTCGCGAAACT-TATCGAAGAAGAGGCTTATGGTGTTGCTTCGAATGCTGT-GTCGAGT 448
|||||||||| | ||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 299 CGTCGCGAAA-TCTATTGAAGAAGAGGCTTATGGTGTTGCTTCGAATGCTGTGGT-GAGT 356
Query 449 GATGATGATGGGATTAAGATTCTTGAGCTTTATTCTAAAGAGATTAGTAAGAGGATGCTT 508
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 357 GATGATGATGGGATTAAGATTCTTGAGGTTTATTCTAAAGAGATTAGTAAGAGGATGCTT 416
Query 509 GAATCTGTTAAGGCTAGATCTAATGCTAGTGTTGGAAATGGAAGTGTGGAGGATGCTAAT 568
||||||||||||||||||||||||| || || |||||||||||||||||||||| |||
Sbjct 417 GAATCTGTTAAGGCTAGATCTAATGGTAATGATGGAAATGGAAGTGTGGAGGATAAGAAT 476
Query 569 ACTGATGCTAGTGAGGTTTCTAAAGATGATGCTGGTCCTGCTTCAGAGGAGGAGAAGAGT 628
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 477 ACTGATGCGAGTGAGGTTTCTAAAGATGATGCAGGTCCTGTTTCAGAGGAGGAGAAGAGT 536
Query 629 GAGGCTTGA 637
|||||||||
Sbjct 537 GAGGCTTGA 545
Score = 95.3 bits (51), Expect = 6e-19
Identities = 70/78 (90%), Gaps = 6/78 (8%)
Strand=Plus/Plus
Query 677 TTAGGGTTTTGCTGTTCTTGTAATGATGATGATGA------CTTGTGGATTTGGTATTAT 730
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 546 TTAGGGTTTTGCTGTTCTTGTAATGATGATGATGATGATGACTTGTGGATTTGGTGTTAT 605
Query 731 GCATATTTGAAGATGTTT 748
| ||||||||||||||||
Sbjct 606 GGATATTTGAAGATGTTT 623
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29049662754
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5