BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47210.2
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473869 jgi|Araly1|473869|fgenesh2_kg.1__3823__AT1G47210.2 1984 0.0
Ahg473870 jgi|Araly1|473870|fgenesh2_kg.1__3824__AT1G47220.1 909 0.0
> Ahg473869 jgi|Araly1|473869|fgenesh2_kg.1__3823__AT1G47210.2
Length=1468
Score = 1984 bits (1074), Expect = 0.0
Identities = 1360/1494 (91%), Gaps = 35/1494 (2%)
Strand=Plus/Plus
Query 1 CActcatccgatctctcaatcctctcaaatctcaaactctctcttcccatcactctctcg 60
||||||||| |||||||||| |||||||| ||| |||| || || | || |||||||
Sbjct 1 CACTCATCCCATCTCTCAAT-CTCTCAAA-CTC--TCTCT-TCCTCTC-TCTCTCTCTCA 54
Query 61 ctctctcttcaatctcatctcaatcaTGACAGAGCAAGAGATCTGCGTGAGGGTTACAAG 120
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||
Sbjct 55 CTCTCTCTTCAATCTCATCTCAACCATGACGGAGCAAGAGATCTGCGTGAGGGTTACGAG 114
Query 121 AGCGGCGGCGAAACGA-AAAGCTTCGACGGCGATGGGTATTGACGGAGATCGGGTCAACA 179
|||||||||| || || ||| | |||||||||||||||| |||||| |||| ||
Sbjct 115 AGCGGCGGCG-AA-GAGAAA------A--GCGATGGGTATTGACGAAGATCGTGTCAGCA 164
Query 180 AGAAGAGAGTTGTTCTCGGTGAGCTTCTAAACGTCTCCAATGTCAATCTCTTGGCTAATC 239
|||||||||||||||| ||||||||||| || |||||||||||||| | || |||||||
Sbjct 165 AGAAGAGAGTTGTTCTTGGTGAGCTTCTTAATGTCTCCAATGTCAAAGTTTTAGCTAATC 224
Query 240 TCAATCAGAAGAAAGAAACCCAGAAGCCAAAAAGGAATCTTAAACCTCCTCCGGCGAAAC 299
|||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 225 TCAATCAGAAGAGAGAAACCCAGAAGCCAAAAAAGAGTCTTAGACCTCCTCCGGCGAAAC 284
Query 300 AGATTAAGTCAGCTCCGGTGGCTATTATTGACCTAGAATCAAAATCTGACATTGATTCTC 359
|| ||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 285 AGCTTAAGACAGCTCCGGTGG---TTATTGACCTAGATTCAGAATCTGACATTGATTCTC 341
Query 360 GATCTGATGATCCTCAAATGTGTGGACCTTATGT-TGCTGATATCTATGAGTATCTTCGT 418
||||| |||||||||||||||||||||||||||| | || ||||| ||||||||||||
Sbjct 342 GATCTCATGATCCTCAAATGTGTGGACCTTATGTCAG-AGACATCTACGAGTATCTTCGT 400
Query 419 CAACTTGAGGTGAAGCCAAAGCAGAGACCTTTACCAGATTACATAGAGAAAGTTCAGAAA 478
|||| ||||||||||||||||| ||||||||||| ||||| || || |||||||| |||
Sbjct 401 GAACTGGAGGTGAAGCCAAAGCAAAGACCTTTACCTGATTATATTGAAAAAGTTCAAAAA 460
Query 479 GATGTAACACCAAGTATGAGAGGTGTTTTGGTTGATTGGTTAGTGGAAGTTGCTGAAGAG 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 GATGTAACACCAAGTATGAGAGGTGTTTTGGTTGATTGGTTAGTGGAAGTTGCTGAAGAG 520
Query 539 TATAAACTTGGATCTGAAACACTTTATCTCACTGTCTCACATATTGATAGATTCTTGTCT 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 521 TATAAACTTGGATCTGAAACACTTTATCTCACTGTCTCACATATTGATAGATTCTTGTCT 580
Query 599 TTAAAGACTGTTAACAAGCAAAAGCTACAGCTTGTTGGAGTTTCTGCTATGCTTATTGCT 658
|| ||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||
Sbjct 581 TTGAAGACTGTTAACAAGCAAAGGCTTCAGCTTGTGGGAGTTTCTGCTATGCTTATCGCT 640
Query 659 TCGAAGTATGAAGAGATAAGTCCTCCTAAAGTGGATGATTTTTGTTACATTACGGATAAT 718
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 641 TCGAAGTATGAAGAGATAAGTCCTCCTAAAGTGGAAGATTTTTGTTATATTACGGATAAT 700
Query 719 ACGTTTTCGAAACAAGATGTTGTGAAGATGGAAGCTGATATACTTCTTGCTCTTCAGTTT 778
|||||| |||| |||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct 701 ACGTTTACGAAGCAAGATGTGGTGAAGATGGAAGCGGATATACTTCTCGCGCTTCAGTTT 760
Query 779 GAGTTGGGAAGACCAACGATTAATACTTTTATGAGACGGTTTACTAGAGTTGCACAAGAC 838
||||| ||||| ||||| || |||||||||||||||||||| || ||||||||||||||
Sbjct 761 GAGTTAGGAAGGCCAACTATCAATACTTTTATGAGACGGTTCACAAGAGTTGCACAAGAA 820
Query 839 GATTTCAAAGTTCCACATTTGCAGCTAGAGCCTCTTTGTTGCTATTTGTCAGAATTGAGT 898
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 821 GATTTCAAAGTGCCACATTTGCAGCTAGAGCCTCTTTGTTGCTATTTATCAGAATTGAGT 880
Query 899 ATATTAGATTATAAGACTGTGAAGTTTGTGCCGTCTCTGTTGGCTGCTTCTGCTGTTTTT 958
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 881 ATATTAGATTACAAAACTGTGAAGTTTGTGCCGTCTCTGTTGGCTGCTTCTGCTGTTTTT 940
Query 959 CTCGCTCGGTTCATCATCCGTCCGAAACAACATCCTTGGAACCAAATGTTAGAAGAGTAC 1018
|| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 941 CTTGCTCGGTTCATCATCCGTCCTAAACAACATCCTTGGAATCAGATGTTAGAAGAATAC 1000
Query 1019 ACAAAGTACAAAGCGGCTGATCTACAAGTGTGTGTTGGAATCATACATGACTTGTATTTG 1078
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1001 ACAAAGTATAAAGCGGCTGATCTACAAGTGTGCGTTGGAATCATACATGACTTGTATCTA 1060
Query 1079 AGCAGAAGAGGAGGTGCTTTACAAGCTGTTAGAGAGAAATATAAGCACCATAAGTTCCAA 1138
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1061 AGCAGAAGAGGAGGTGCTCTACAAGCTGTTAGAGAGAAATACAAGCACCATAAGTTCCAA 1120
Query 1139 TGCGTTGCGACCATGCCTGTTTCACCAGAGCTGCCGGTTACCTTTTGGGAGGATGTTACC 1198
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TGCGTTGCCACCATGCCTGTTTCACCAGAGCTGCCGGTTACCTTTTGGGAGGATGTTACC 1180
Query 1199 ATTTGATCTGAGGTTATGCTATCTTAAGCAAATGTTACGGAGCTGGATTACCGAATCTTG 1258
||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1181 ATTTGATCTGAGGTTATGCTATCTTTGGCAAATGTTACAGAGCTCGATTACCGAATCTTG 1240
Query 1259 TTTCAAATAGTATAATGGACACAGATCTTCAAGTGAAGCTAGAAGAGTAAGAAATATAGA 1318
| ||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 1241 TGTCAAATAGTATAAGGGACACAGATCAACAAGTCAAGCTAGAAGAGTAAGAACTATAGT 1300
Query 1319 AGTGAAGGCAGGAGCAAATAAGTCTGCGTTATGTGAAGATGTGTGATGTATTATTGAAAT 1378
|||||||||||||||| |||||| || |||||||||||||||||||||| ||||||||||
Sbjct 1301 AGTGAAGGCAGGAGCAGATAAGTTTGTGTTATGTGAAGATGTGTGATGTGTTATTGAAAT 1360
Query 1379 CTCTTCTTTTTTATTTACAAAATTTTAGTGTGAAATTCGGAATAATATAATTTTATACAA 1438
||| | ||| || | |||||||| |||||| || | |||||||||||||||||||||
Sbjct 1361 CTCAT-TTTGTT-T--ACAAAATT--AGTGTGTAACCCCGAATAATATAATTTTATACAA 1414
Query 1439 TTATG-------CAATATGATATAAGTATTTATGTGACATGATCTTATTTTGTT 1485
||||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1415 TTATGAATTATGCAATATGATATAAGTATTTTTGTGATATGATCTTATTTTGTT 1468
> Ahg473870 jgi|Araly1|473870|fgenesh2_kg.1__3824__AT1G47220.1
Length=981
Score = 909 bits (492), Expect = 0.0
Identities = 752/875 (86%), Gaps = 28/875 (3%)
Strand=Plus/Plus
Query 344 TCTGACATTGATTCTCGATCTGATGATCCTCAAATGTGTGGACCTTATGT-TGCTGATAT 402
||||||||||| || ||||||||||||| || |||||||||| |||||| | | |||||
Sbjct 121 TCTGACATTGACGCTAGATCTGATGATCCACAGATGTGTGGACTTTATGTCT-CAGATAT 179
Query 403 CTATGAGTATCTTCGTCAACTT-GAGGTGAAGCCAAAGC-AGAGACCTTTACCA-GATTA 459
||| |||||||| ||| || || |||||||||||||||| | ||||||||| | |||||
Sbjct 180 CTACGAGTATCTCCGTGAA-TTAGAGGTGAAGCCAAAGCTA-AGACCTTTA-GATGATTA 236
Query 460 CATAGAGAAA-GTTC-AGAAAGATGTAACACCAAGTAT-GAGAGGTGTTTTGGTTGATTG 516
|| || ||| |||| || |||| ||||||||||| | |||||||||||| || |||||
Sbjct 237 TATGGA-AAAGGTTCAAG-AAGAAGTAACACCAAG-CTCGAGAGGTGTTTTAGTAGATTG 293
Query 517 GTTAGTGGAAGTTGCTGAAGAGTATA-AACTTGGATCTGAAACACTTTATCTCACTGTCT 575
||||||||||||||||||||||| | |||| || ||||||||| | |||||||||||||
Sbjct 294 GTTAGTGGAAGTTGCTGAAGAGT-TCGAACTCGGGTCTGAAACAATCTATCTCACTGTCT 352
Query 576 CACATATTGATAGATTCTTGTCTTTAAAGACTGTTAACAAGCAAAAGCTACAGCTTGTTG 635
| | || |||||||||||||| | ||||||||| ||| ||||||| || |||||||| |
Sbjct 353 CTTACATCGATAGATTCTTGTCCTCAAAGACTGTCAACGAGCAAAAACTTCAGCTTGTAG 412
Query 636 GAGTTTCTGCTATGCTTATTGCTTCGAAGTATGAAGAGATAA-GTCCTCCTAAAGTGGAT 694
|||||||||| ||| |||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 413 GAGTTTCTGCAATGTTTATTGCTTCGAAGTATGAAGAGA-AACGTCGTCCTAAAGTGGAG 471
Query 695 GATTTTTGTTACATTACGGATAATACGTTTTCGAAACAAGATGTTGT-GAAGATGGAAGC 753
||||||||||||||||||| |||||| | | ||||||||||||| || |||||||||||
Sbjct 472 GATTTTTGTTACATTACGGCTAATACATATACGAAACAAGATGT-GTTGAAGATGGAAGA 530
Query 754 TGATATACTTCTT-GCTCTTCAGTTTGAGTTGGGAAGACCAACGATTAATACTTTTATGA 812
|| |||||| || || ||| ||||||| | ||||| || ||||| ||||||||| | |
Sbjct 531 GGAAATACTT-TTCGCGCTTGAGTTTGAACTAGGAAGGCCTACGATCAATACTTTTCTAA 589
Query 813 GACGGTTTACTA-GAGTTGCACAAGACGATTTCAAAGTTCCACATTTGCAGCTAGAGCCT 871
||||||| | || | ||||||||||| ||||||||||| ||| | |||||||||||||||
Sbjct 590 GACGGTTCA-TAAGGGTTGCACAAGAAGATTTCAAAGTGCCAAACTTGCAGCTAGAGCCT 648
Query 872 CTTTGTTGCTATTTGTCAGAATTGAGTATATTAGATTATAAGAC-TGTGAAGTTTGTGCC 930
|||||||||||||| |||||| | ||||| |||||||||| | |||||||||||| ||
Sbjct 649 CTTTGTTGCTATTTATCAGAACTAAGTATGTTAGATTATA-GTTGTGTGAAGTTTGTTCC 707
Query 931 GTCTCTGTTGGCTGCTTCTGCTGTTTTTCTCGCTCGGTTCATCATCCGTCCGAAACAACA 990
||| ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 708 ATCTTTGTTGGCTGCTTCTGCTGTCTTTCTCGCTCAATTCATCATCCGTCCCAAACAACA 767
Query 991 TCCTTGGAACCAAATGTTAGAAGAGTACACAAAGTACAAAGCGGCTGATCTACAAGTGTG 1050
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 768 TCCTTGGAGTCAAATGTTAGAAGAATACACAAAGTACAAAGCATCTGATCTACAAGTGTG 827
Query 1051 TGTTGGAATCATACATGACTTGTATTTGAGCAGAAGAGGAGGTGCTTTACAAGCTGTTAG 1110
||| |||||||| |||||||||||| |||||||||| | |||||||| | ||||||||||
Sbjct 828 TGTGGGAATCATGCATGACTTGTATCTGAGCAGAAGTGAAGGTGCTTCAAAAGCTGTTAG 887
Query 1111 AGAGAAATATAAGCACCATAAGTTCCAATGCGTTGCGACCATGCCTGTTTCACCA-GAGC 1169
| ||||||| | ||| ||||||||||||| |||||| || || ||||| | |||| ||||
Sbjct 888 AAAGAAATACACGCAACATAAGTTCCAATACGTTGCCACAATTCCTGTCT-ACCAAGAGC 946
Query 1170 TGCCGGTTACCTTTTGGGAGGATGTTACCATTTGA 1204
|||||| ||||||||||||||||||||||||||||
Sbjct 947 TGCCGGATACCTTTTGGGAGGATGTTACCATTTGA 981
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55611757700
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5