BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47220.1
Length=984
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473870 jgi|Araly1|473870|fgenesh2_kg.1__3824__AT1G47220.1 1447 0.0
Ahg473869 jgi|Araly1|473869|fgenesh2_kg.1__3823__AT1G47210.2 950 0.0
> Ahg473870 jgi|Araly1|473870|fgenesh2_kg.1__3824__AT1G47220.1
Length=981
Score = 1447 bits (783), Expect = 0.0
Identities = 915/978 (94%), Gaps = 11/978 (1%)
Strand=Plus/Plus
Query 11 AGAAAGATAAACAGATTCATTCCGACCATAACCCTCAAGATGCTTCCCCGGTAGAGTGGG 70
||||| | |||||| ||||| ||||||| |||||||||||||||||||||| ||||||||
Sbjct 11 AGAAAAACAAACAGTTTCATGCCGACCAAAACCCTCAAGATGCTTCCCCGGCAGAGTGGG 70
Query 71 CGGAAATTCGACATAAGCTACTTGCGTTTCAAGAGAACATTCAATCAGGCTCTGACATTG 130
|||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 71 CGGAGATTCGACATAGGCTACTTGCGATGCAAGAGAACATTCAATCAGGCTCTGACATTG 130
Query 131 ACGCTAGGTCTGATGATCCACAGATGTGTGGACTTTATGTCTCAGATATCTACGAGTATC 190
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 ACGCTAGATCTGATGATCCACAGATGTGTGGACTTTATGTCTCAGATATCTACGAGTATC 190
Query 191 TCCGTGAATTAGAGGTGAAGCCAAAGCTAAGACCTTTACATGATTACATTGAAAAGATTC 250
|||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||
Sbjct 191 TCCGTGAATTAGAGGTGAAGCCAAAGCTAAGACCTTTAGATGATTATATGGAAAAGGTTC 250
Query 251 AAGAAGATA-TAACACCAAGCAAGAGAGGTGTTTTGGTAGATTGGTTAGTGGAAGTTGCT 309
||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 251 AAGAAGA-AGTAACACCAAGCTCGAGAGGTGTTTTAGTAGATTGGTTAGTGGAAGTTGCT 309
Query 310 GAAGAGTTCGAACTCGTGTCTGAAACACTCTATCTCACTGTCTCTTACATTGATAGATTC 369
|||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 310 GAAGAGTTCGAACTCGGGTCTGAAACAATCTATCTCACTGTCTCTTACATCGATAGATTC 369
Query 370 TTGTCATTAAAGA-TGGTTAACGAGCACTGGCTTCAGCTTGTGGGAGTTTCTGCAATGTT 428
||||| | ||||| || | |||||||| ||||||||||| |||||||||||||||||
Sbjct 370 TTGTCCTCAAAGACTG-TCAACGAGCAAAAACTTCAGCTTGTAGGAGTTTCTGCAATGTT 428
Query 429 TATCGCTTCGAAGTATGAAGAGAAACGTCGCCCTAAAGTGGAGGATTTTTGTTACATTAC 488
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 429 TATTGCTTCGAAGTATGAAGAGAAACGTCGTCCTAAAGTGGAGGATTTTTGTTACATTAC 488
Query 489 GGCTAATACTTATACGAAACAAGATGTGTTGAAGATGGAAGAGGATATACTTCTCGCGCT 548
||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 489 GGCTAATACATATACGAAACAAGATGTGTTGAAGATGGAAGAGGAAATACTTTTCGCGCT 548
Query 549 TGAGTTTGAACTAGGAAGGCCTACGA-CAAATACTTTTCTAAGACGGTTCATAAGGGTTG 607
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 549 TGAGTTTGAACTAGGAAGGCCTACGATCAA-TACTTTTCTAAGACGGTTCATAAGGGTTG 607
Query 608 CACAAGAAGATTTCAAAGTGCCAAACTTGCAGCTAGAGCCTCTTTGTTGCTATCTGTCAG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 608 CACAAGAAGATTTCAAAGTGCCAAACTTGCAGCTAGAGCCTCTTTGTTGCTATTTATCAG 667
Query 668 AACTAAGTATGTTAGATTATAGTTGTGTGAAGTTTGTTCCATCTTTGTTGGCTGCTTCTG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AACTAAGTATGTTAGATTATAGTTGTGTGAAGTTTGTTCCATCTTTGTTGGCTGCTTCTG 727
Query 728 CTGTCTTTCTCGCTCGATTCATCATCCTTCCTAACCAACATCCTTGGAGTCAAATGTTGG 787
||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||| |
Sbjct 728 CTGTCTTTCTCGCTCAATTCATCATCCGTCCCAAACAACATCCTTGGAGTCAAATGTTAG 787
Query 788 AAGAATGCACAAAGTACAAAGCGGCTGATCTACAAGTGTGTGTGGAGA-TCATGCTTGAC 846
|||||| ||||||||||||||| ||||||||||||||||||||| || |||||| ||||
Sbjct 788 AAGAATACACAAAGTACAAAGCATCTGATCTACAAGTGTGTGTGG-GAATCATGCATGAC 846
Query 847 TTGTACCTGAGCAGAAGTGAAGGTGCTTCAAAAGCTGTTAGAGAGAAATACAAGCAACAT 906
||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 847 TTGTATCTGAGCAGAAGTGAAGGTGCTTCAAAAGCTGTTAGAAAGAAATACACGCAACAT 906
Query 907 AAGTTCCAATACGTTGCGGCAATTCCTGTCTACCAAGAGCTTCCGGTTACCTTTTGGGAG 966
||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 907 AAGTTCCAATACGTTGCCACAATTCCTGTCTACCAAGAGCTGCCGGATACCTTTTGGGAG 966
Query 967 GATGTTGTTACCATTTGA 984
|||||| |||||||||
Sbjct 967 GATGTT---ACCATTTGA 981
> Ahg473869 jgi|Araly1|473869|fgenesh2_kg.1__3823__AT1G47210.2
Length=1468
Score = 950 bits (514), Expect = 0.0
Identities = 759/875 (87%), Gaps = 25/875 (3%)
Strand=Plus/Plus
Query 121 TCTGACATTGACGCTAGGTCTGATGATCCACAGATGTGTGGACTTTATGTCTCAGATATC 180
||||||||||| || | ||| ||||||| || |||||||||| ||||||| ||| |||
Sbjct 326 TCTGACATTGATTCTCGATCTCATGATCCTCAAATGTGTGGACCTTATGTCAGAGACATC 385
Query 181 TACGAGTATCTCCGTGAATTAGAGGTGAAGCCAAAGCTAAGACCTTTACATGATTACATT 240
||||||||||| |||||| | |||||||||||||||| ||||||||||| |||||| |||
Sbjct 386 TACGAGTATCTTCGTGAACTGGAGGTGAAGCCAAAGCAAAGACCTTTACCTGATTATATT 445
Query 241 G-AAAAGATTCAAGAAGATATAACACCAAGCAAGAGAGGTGTTTTGGTAGATTGGTTAGT 299
| ||||| ||||| ||||| |||||||||| | ||||||||||||||| |||||||||||
Sbjct 446 GAAAAAG-TTCAAAAAGATGTAACACCAAGTATGAGAGGTGTTTTGGTTGATTGGTTAGT 504
Query 300 GGAAGTTGCTGAAGAGT-TCGAACTCGTG-TCTGAAACACTCTATCTCACTGTCTCTTAC 357
||||||||||||||||| | |||| | | ||||||||||| |||||||||||||| |
Sbjct 505 GGAAGTTGCTGAAGAGTATA-AACTTG-GATCTGAAACACTTTATCTCACTGTCTCACAT 562
Query 358 ATTGATAGATTCTTGTCATTAAAGA-TGGTTAACGAGCACTGGCTTCAGCTTGTGGGAGT 416
||||||||||||||||| || |||| || ||||| |||| |||||||||||||||||||
Sbjct 563 ATTGATAGATTCTTGTCTTTGAAGACTG-TTAACAAGCAAAGGCTTCAGCTTGTGGGAGT 621
Query 417 TTCTGCAATGTTTATCGCTTCGAAGTATGAAGAGA-AACGTCGC-CCTAAAGTGGAGGAT 474
|||||| ||| |||||||||||||||||||||||| || ||| | ||||||||||| |||
Sbjct 622 TTCTGCTATGCTTATCGCTTCGAAGTATGAAGAGATAA-GTC-CTCCTAAAGTGGAAGAT 679
Query 475 TTTTGTTACATTACGGCTAATAC-TTATACGAAACAAGATGTGTTGAAGATGGAAGAGGA 533
|||||||| ||||||| |||||| || |||||| ||||||||| |||||||||||| |||
Sbjct 680 TTTTGTTATATTACGGATAATACGTT-TACGAAGCAAGATGTGGTGAAGATGGAAGCGGA 738
Query 534 TATACTTCTCGCGCTTGAGTTTGAACTAGGAAGGCCTACGA-CAAATACTTTTCTAAGAC 592
|||||||||||||||| ||||||| |||||||||| || | ||| ||||||| | ||||
Sbjct 739 TATACTTCTCGCGCTTCAGTTTGAGTTAGGAAGGCCAACTATCAA-TACTTTTATGAGAC 797
Query 593 GGTTCATAAGGGTTGCACAAGAAGATTTCAAAGTGCCAAACTTGCAGCTAGAGCCTCTTT 652
|||||| ||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 798 GGTTCACAAGAGTTGCACAAGAAGATTTCAAAGTGCCACATTTGCAGCTAGAGCCTCTTT 857
Query 653 GTTGCTATCTGTCAGAACTAAGTATGTTAGATTATAGTTGTGTGAAGTTTGTTCCATCTT 712
|||||||| | |||||| | ||||| |||||||| | |||||||||||| || |||
Sbjct 858 GTTGCTATTTATCAGAATTGAGTATATTAGATTACAAAACTGTGAAGTTTGTGCCGTCTC 917
Query 713 TGTTGGCTGCTTCTGCTGTCTTTCTCGCTCGATTCATCATCCTTCCTAACCAACATCCTT 772
||||||||||||||||||| ||||| ||||| |||||||||| |||||| ||||||||||
Sbjct 918 TGTTGGCTGCTTCTGCTGTTTTTCTTGCTCGGTTCATCATCCGTCCTAAACAACATCCTT 977
Query 773 GGAGTCAAATGTTGGAAGAATGCACAAAGTACAAAGCGGCTGATCTACAAGTGTGTGT-G 831
||| ||| ||||| ||||||| ||||||||| ||||||||||||||||||||||| || |
Sbjct 978 GGAATCAGATGTTAGAAGAATACACAAAGTATAAAGCGGCTGATCTACAAGTGTGCGTTG 1037
Query 832 GAGATCATGCTTGACTTGTACCTGAGCAGAAGTGAAGGTGCTTCAA-AAGCTGTTAGAGA 890
|| ||||| | ||||||||| || |||||||| | ||||||| | | |||||||||||||
Sbjct 1038 GA-ATCATACATGACTTGTATCTAAGCAGAAGAGGAGGTGCT-CTACAAGCTGTTAGAGA 1095
Query 891 GAAATACAAGCAACATAAGTTCCAATACGTTGCGGCAATTCCTGTCT-ACCAAGAGCTTC 949
|||||||||||| ||||||||||||| |||||| | || ||||| | |||| ||||| |
Sbjct 1096 GAAATACAAGCACCATAAGTTCCAATGCGTTGCCACCATGCCTGTTTCACCA-GAGCTGC 1154
Query 950 CGGTTACCTTTTGGGAGGATGTTGTTACCATTTGA 984
||||||||||||||||||||||| |||||||||
Sbjct 1155 CGGTTACCTTTTGGGAGGATGTT---ACCATTTGA 1186
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36559877403
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5