BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47230.2
Length=1549
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473872 jgi|Araly1|473872|fgenesh2_kg.1__3826__AT1G47230.2 2098 0.0
Ahg473869 jgi|Araly1|473869|fgenesh2_kg.1__3823__AT1G47210.2 797 0.0
> Ahg473872 jgi|Araly1|473872|fgenesh2_kg.1__3826__AT1G47230.2
Length=1544
Score = 2098 bits (1136), Expect = 0.0
Identities = 1437/1573 (91%), Gaps = 58/1573 (4%)
Strand=Plus/Plus
Query 6 TCAAATCCCTAAAAATTTCGAAATCGGAAAATTTACACAGAGAAGCGCCATGACCTAAAA 65
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 1 TCAAATCCCTAAAAA-TTCGAAATC-G-AAATTTACACAGAGAAGCGCCATGACCT-AAA 56
Query 66 ATCTCAAAACTTCCCCAACAAAAATGGCGCTTTTACTCAACCCATTTCCTTTTACCTACC 125
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 57 ATCTCAAAACTTCCCCATCAAAAATGGCGCTTTTACTCTACCCATTTCCTCTTACCTTCC 116
Query 126 TTGTACATTACCCCTTTTCTCAAATCTCACTTTCCCACTGAAATAACCCCATGGCGGAGA 185
|| |||||||||||||| |||||||||| |||||||| ||||| || |||||| ||||||
Sbjct 117 TTCTACATTACCCCTTTCCTCAAATCTCTCTTTCCCATTGAAA-AAACCCATGTCGGAGA 175
Query 186 ATCAGAACTGTGCGAGGATGACGAGAGCGGCGGCGAAACGAAAAGCGTCGTCCATGGCGT 245
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 176 ATCAGAACTGCGCGAGGATGACGAGAGCGGCGGCGAAACGAAAAGCGTCGTCTATGGCGG 235
Query 246 TAGACGAAAACCCAGTTAGTAAGAAGAGAGTTGTTCTCGGAGAGCTTCCGAATATGTCCA 305
| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 236 TGGATGAAAACCCAGTTAGTAAAAAGAGAGTTGTGCTCGGAGAGCTTCCGAATATGTCCA 295
Query 306 ATGTCGT---TG---C--TG-TACCCAATCAAGAAAGAGAGACCCTTAAGGCTAAAACAA 356
||||||| || | || ||||||||||||||||||| |||||||||||||| |||
Sbjct 296 ATGTCGTAGCTGTTCCGGTGAAACCCAATCAAGAAAGAGAGGCCCTTAAGGCTAAATCAA 355
Query 357 GTGTTAATACCTCGAAGAGGCAGATGAAGAAGGCTTTGATGATTCCTGAAGCTAGCGTAC 416
||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 356 GTGCTAATACCTCGAAGAAGCAGATGAAGAAGGCTTTGATGATTCCTGAACCTAGCGTA- 414
Query 417 TA-ATCGAATCGAGATCTGTTGATCCTCAGATGTGTGAGCCTTTTGCTAGTGATATTTGT 475
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 GATATTGAATCGAGATCTGTTGATCCTCAGATGTGTGAGCCTTTTGCTAGTGATATTTGT 474
Query 476 GCTTATCTCCGTGAAATGGAGGGGAAGCCGAAACATAGACCACTACCTGATTATATTGAA 535
|||||||| |||||||||||||||||| |||||||||||||| |||| ||||||||||||
Sbjct 475 GCTTATCTTCGTGAAATGGAGGGGAAGGCGAAACATAGACCATTACCGGATTATATTGAA 534
Query 536 AAGGTTCAGAGTGATTTAACTCCACACATGAGAGCGGTTTTGGTGGATTGGTTAGTGGAG 595
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 535 AAGGTTCAGAGTGATTTAACGCCTCACATGAGAGCGGTTTTGGTGGATTGGTTAGTGGAA 594
Query 596 GTTGCTGAGGAGTACAAGCTTGTTTCGGATACGCTTTATCTCACTATCTCCTATGTTGAT 655
||||||||||||||||| ||||| |||||||| || ||||||||| |||||||||| |||
Sbjct 595 GTTGCTGAGGAGTACAAACTTGTCTCGGATACTCTCTATCTCACTGTCTCCTATGTGGAT 654
Query 656 AGATTCTTGTCTGTGAAGCCTATTAACAGGCAGAAGCTTCAGCTTGTGGGAGTTTCTGCA 715
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 AGATTCTTGTCTGTGAAGCCTATTAACAGGCAGAAGCTTCAGCTTGTGGGAGTTTCTGCG 714
Query 716 ATGCTTATTGCGTCTAGGAAATATGAAGAGATAGGTCCTCCTAAAGTTGAAGATTTTTGT 775
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 715 ATGCTTATTGCGTCTAGGAAATATGAAGAGATAGGTCCTCCTAAAGTGGAAGATTTTTGT 774
Query 776 TACATTACGGATAATACATTTACTAAACAAGAAGTGGTGTCGATGGAGGCGGATATACTT 835
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 775 TACATCACGGATAATACATTCACAAAACAAGAAGTGGTGTCGATGGAGGCGGATATACTT 834
Query 836 CTTGCTCTGCAGTTTGAATTAGGAAGCCCAACCATCAAAACATTCCTAAGACGGTTTACA 895
|||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 835 CTTGCTTTGCAGTTTGAACTAGGAAGTCCAACCATCAAAACATTCCTAAGACGGTTTACA 894
Query 896 CGGGTTGCACAAGAAGATTTCAAAGACTCACAATTGCAGATAGAGTTCCTTTGTTGCTAT 955
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 895 CGGGTTGCACAAGAAGATTTCAAAGACTCACTATTGCAGATAGAGTTCCTATGTTGCTAT 954
Query 956 CTATCAGAATTGAGTATGTTAGATTACACCTGTGTGAAGTATTTGCCATCTCTTTT-GTC 1014
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 955 CTATCAGAATTGAGTATGTTAGATTACACCTGTGTGAAGTATTTGCCTTCTCTTTTAG-C 1013
Query 1015 TGCTTCAGCTGTATTTCTTGCCCGGTTCATCATCCGTCCAAAACAACATCCTTGGAATCA 1074
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1014 TGCTTCTGCTGTATTTCTTGCCCGATTCATCATCCGTCCAAAACAACATCCTTGGAATCA 1073
Query 1075 AATGCTAGAAGAATACACAAAGTACAAAGCAGCTGATCTACAAGTGTGCGTGGGTATCAT 1134
|||| |||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |
Sbjct 1074 AATGTTAGAAGAATACACAAAGTACAAAGCATCTGATCTACAAGTATGCGTGGGAATCGT 1133
Query 1135 ACATGACTTGTATCTAAGCAGAAGAGGAAACACTCTAGAAGCTGTTAGAAATAAGTACAA 1194
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1134 ACATGACTTGTATCTAAGCAGAAGAGGAAACACTCTAGAAGCTGTTAGAAATAAATACAA 1193
Query 1195 GCAACACAAGTACAAGTGCGTTGCGACCATGCCTGTTTCACCGGAGCTACCTCTTGCTTT 1254
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1194 GCAACATAAGTACAAGTGCGTTGCGACCATGCCTGTTTCACCGGAGCTGCCTCTTGCTTT 1253
Query 1255 CTTTGAAGATATTACCATTAGAGGAATGGCGTAAAAGAAGCTTGAAGCTTATGTATTGGA 1314
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1254 CTTTGAAGATATTACCATTAGAGGAACGGCGTAAAAGAAGCTCAAAGCTTATGTGTTGGA 1313
Query 1315 AGTGTTAGTTACCTGAATTTTGGGTTGTATATATCT------GTTA---GAATGGCAGAT 1365
| |||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1314 AATGTTAGTTGCCTGAATTTTGGGTTGTATATATCTCAATCTGTTATTAGAATGGCAGAT 1373
Query 1366 TAGTATTGAGTATTATCTCTTTTAGCGTATGTTCAATGATTTTTGCTAACACTAGTTAAG 1425
|||||||||| | |||||||||| | | || || |||||| ||||||||
Sbjct 1374 TAGTATTGAG-A--ATCTCTTTTA---T-T-TT---TG-------CTAACATTAGTTAAG 1415
Query 1426 AAACttttttttttttgcttgaccattttttcaatggtttattagatttttattgatttg 1485
|||||| | |||| ||||| ||||| ||||||||||| ||||| || |||||||||
Sbjct 1416 AAACTTCTCCTTTT--GCTTGGCCATTATTTCAATGGTT-ATTAGCTTAA-ATTGATTTG 1471
Query 1486 ttttctgctttt-ttCTATGA--T------GTAAAAGCCTCTTTAAATCATATTGGAATG 1536
|||||||||||| || ||||| | |||||||||||||| ||| |||||| ||||
Sbjct 1472 TTTTCTGCTTTTATTATATGACGTAATCATGTAAAAGCCTCTTTCAATTATATTGAAATG 1531
Query 1537 TGCACATCCTCTT 1549
|||||||||||||
Sbjct 1532 TGCACATCCTCTT 1544
> Ahg473869 jgi|Araly1|473869|fgenesh2_kg.1__3823__AT1G47210.2
Length=1468
Score = 797 bits (431), Expect = 0.0
Identities = 912/1136 (80%), Gaps = 66/1136 (6%)
Strand=Plus/Plus
Query 174 CCATGGCGGAG-AATCAGAACTGTGCGAGGATGACGAGAGCGGCGGCGAA-ACGAAAAGC 231
||||| ||||| || ||| ||| | |||| | ||||||||||||||||| | |||||
Sbjct 78 CCATGACGGAGCAA-GAGATCTGCGTGAGGGTTACGAGAGCGGCGGCGAAGA-GAAAA-- 133
Query 232 GTCGTCCATGGCGT-TAGACGAAAACCCAGTTAGTAAGAAGAGAGTTGTTCTCGGAGAGC 290
| || |||| || | |||||| | | || || ||||||||||||||||| || ||||
Sbjct 134 G-CG---ATGG-GTATTGACGAAGATCGTGTCAGCAAGAAGAGAGTTGTTCTTGGTGAGC 188
Query 291 TTCCGAATATGTCCAATGTC---G--TT-GCTGTA-CCCAATCAAGAA-AGAGAGACCCT 342
||| ||| | ||||||||| | || ||| | | ||||| |||| ||||| ||||
Sbjct 189 TTCTTAATGTCTCCAATGTCAAAGTTTTAGCT-AATCTCAATC-AGAAGAGAGAAACCCA 246
Query 343 TAAGGCTAAAACA-AGTGTTA-A--TACCT-CGAAGAGGCAGATGAAGA-AGGCTTTGAT 396
|| || |||| | ||| ||| | | ||| || || ||| | |||| | ||| | |
Sbjct 247 GAA-GCCAAAAAAGAGTCTTAGACCT-CCTCCGGCGAAACAGCTTAAGACA-GCTCCGGT 303
Query 397 GATTCCTGAAGCTAG---C-GTA-CT-A-ATCGAATCGAGATCTGTTGATCCTCAGATGT 449
| || || | |||| | | | || | || || || ||||| ||||||||| ||||
Sbjct 304 GGTTATTG-ACCTAGATTCAGAATCTGACATTGATTCTCGATCTCATGATCCTCAAATGT 362
Query 450 GT-GAGCCTTTTGCT-AGTGATATTTGTGCTTATCTCCGTGAAATGGAGGGGAAGCCGAA 507
|| || |||| || | || || || | | ||||| |||||| |||||| |||||| ||
Sbjct 363 GTGGA-CCTTATG-TCAGAGACATCTACGAGTATCTTCGTGAACTGGAGGTGAAGCC-AA 419
Query 508 A-CATAGACCACTACCTGATTATATTGAAAAGGTTCAGAGTGATTTAACTCCACA-CATG 565
| || ||||| ||||||||||||||||||| ||||| | ||| |||| ||| | |||
Sbjct 420 AGCAAAGACCTTTACCTGATTATATTGAAAAAGTTCAAAAAGATGTAACACCA-AGTATG 478
Query 566 AGAGCG-GTTTTGGTGGATTGGTTAGTGGAGGTTGCTGAGGAGTACAAGCTTGTTTCGGA 624
|||| | |||||||| |||||||||||||| |||||||| ||||| || |||| || ||
Sbjct 479 AGAG-GTGTTTTGGTTGATTGGTTAGTGGAAGTTGCTGAAGAGTATAAACTTGGATCTGA 537
Query 625 TACGCTTTATCTCACTATCTC-CTATGTTGATAGATTCTTGTCTGTGAAGCCTATTAACA 683
|| |||||||||||| |||| | || ||||||||||||||||| ||||| || ||||||
Sbjct 538 AACACTTTATCTCACTGTCTCAC-ATATTGATAGATTCTTGTCTTTGAAGACTGTTAACA 596
Query 684 GGCAGAA-GCTTCAGCTTGTGGGAGTTTCTGCAATGCTTATTGCGTCTAGGAAATATGAA 742
||| || |||||||||||||||||||||||| ||||||| | || || ||| ||||||
Sbjct 597 AGCA-AAGGCTTCAGCTTGTGGGAGTTTCTGCTATGCTTA-T-CG-CTTCGAAGTATGAA 652
Query 743 GAGATAGGTCCTCCTAAAGTTGAAGATTTTTGTTACATTACGGATAATACATTTACTAAA 802
|||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 653 GAGATAAGTCCTCCTAAAGTGGAAGATTTTTGTTATATTACGGATAATACGTTTACGAAG 712
Query 803 CAAGAAGTGGTGTCGATGGAGGCGGATATACTTCTTGCTCTGCAGTTTGAATTAGGAAGC 862
||||| |||||| |||||| |||||||||||||| || || |||||||| ||||||||
Sbjct 713 CAAGATGTGGTGAAGATGGAAGCGGATATACTTCTCGCGCTTCAGTTTGAGTTAGGAAGG 772
Query 863 CCAACCATCAAAACATTCCTAAGACGGTTTACACGGGTTGCACAAGAAGATTTCAAAG-A 921
||||| ||||| || || | |||||||| ||| | ||||||||||||||||||||||
Sbjct 773 CCAACTATCAATACTTTTATGAGACGGTTCACAAGAGTTGCACAAGAAGATTTCAAAGTG 832
Query 922 CTCACAATTGCAGATAGAGTTC-CTTTGTTGCTATCTATCAGAATTGAGTATGTTAGATT 980
| |||| |||||| ||||| | |||||||||||| |||||||||||||||| |||||||
Sbjct 833 C-CACATTTGCAGCTAGAG-CCTCTTTGTTGCTATTTATCAGAATTGAGTATATTAGATT 890
Query 981 ACACCTGTGTGAAGTATT-TGCCATCTCTTTTGTCTGCTTCAGCTGTATTTCTTGCCCGG 1039
||| |||||||| || |||| ||||| ||| ||||||| ||||| |||||||| |||
Sbjct 891 ACAAAACTGTGAAGT-TTGTGCCGTCTCTGTTGGCTGCTTCTGCTGTTTTTCTTGCTCGG 949
Query 1040 TTCATCATCCGTCCAAAACAACATCCTTGGAATCAAATGCTAGAAGAATACACAAAGTAC 1099
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 950 TTCATCATCCGTCCTAAACAACATCCTTGGAATCAGATGTTAGAAGAATACACAAAGTAT 1009
Query 1100 AAAGCAGCTGATCTACAAGTGTGCGTGGGTATCATACATGACTTGTATCTAAGCAGAAGA 1159
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1010 AAAGCGGCTGATCTACAAGTGTGCGTTGGAATCATACATGACTTGTATCTAAGCAGAAGA 1069
Query 1160 GGAAACACTCTAGAAGCTGTTAGAAATAAGTACAAGCAACACAAGTAC-AAGTGCGTTGC 1218
||| ||||| ||||||||||| | || |||||||| || |||| | || ||||||||
Sbjct 1070 GGAGGTGCTCTACAAGCTGTTAGAGAGAAATACAAGCACCATAAGTTCCAA-TGCGTTGC 1128
Query 1219 GACCATGCCTGTTTCACCGGAGCTACCTCTTGCTTTCTTTGAAG-ATATTACCATT 1273
||||||||||||||||| ||||| || || | || || | || || ||||||||
Sbjct 1129 CACCATGCCTGTTTCACCAGAGCTGCCGGTTACCTT-TTGGGAGGATGTTACCATT 1183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58011443135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5