BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47240.1
Length=1922
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923008 jgi|Araly1|923008|scaffold_104289.1 2604 0.0
> Ahg923008 jgi|Araly1|923008|scaffold_104289.1
Length=1640
Score = 2604 bits (1410), Expect = 0.0
Identities = 1571/1647 (95%), Gaps = 17/1647 (1%)
Strand=Plus/Plus
Query 70 CGAATATTCCCTCTTCCTCCATGGAAAACGACGTCAAAGAGAATC-T--CGAAGAAG-AG 125
|||||||||||||| |||| ||||||||||||||||| ||||| | | ||||||| ||
Sbjct 1 CGAATATTCCCTCTCCCTCAATGGAAAACGACGTCAAGGAGAAGCTTGAAGAAGAAGAAG 60
Query 126 --GAAG---ACCGTCTTCTTCCTCCTCCTCCTCCTTCACAATCTCTCCCATCCACCGATT 180
|||| ||||||||||||||||||||| ||| | ||||||||||| ||| ||||||
Sbjct 61 AAGAAGCTAACCGTCTTCTTCCTCCTCCTCATCC-T--CAATCTCTCCCTTCCTCCGATT 117
Query 181 CCGAATCCGAAGCGGCTTTCGAAACAAACGAAAAGATCCTAATCGTCGATTTCGAATCAC 240
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
Sbjct 118 CCGAATCCGAAGCCGCTTTCGAATCAAACGAAAAGATCCTAATCGTCGATTTCGAATCTC 177
Query 241 CCGACGATCCAACAACCGGAGACACACCACCGCCATTCTCATGGCGGAAGCTCTGGTTAT 300
||||||||||||||||||||||| |||||||||||||||| |||||||| || |||||||
Sbjct 178 CCGACGATCCAACAACCGGAGACTCACCACCGCCATTCTCGTGGCGGAAACTATGGTTAT 237
Query 301 TCACCGGTCCAGGTTTCTTAATGAGTATAGCGTTTTTGGATCCAGGGAATCTAGAAGGAG 360
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 238 TCACCGGTCCAGGTTTCTTAATGAGTATAGCGTTTTTGGATCCAGGGAATTTAGAAGGAG 297
Query 361 ATCTACAAGCTGGTGCAATCGCTGGCTATTCTCTGTTGTGGCTACTAATGTGGGCAACAG 420
||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||
Sbjct 298 ATCTACAAGCTGGTGCAATCGCTGGCTATTCTCTGTTATGGCTATTGATGTGGGCAACAG 357
Query 421 CTATGGGGTTGTTGATTCAGATGTTGTCAGCTAGAGTCGGTGTAGCTACTGGTCGTCATT 480
||||||| ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||
Sbjct 358 CTATGGGATTGTTGATTCAGATGTTATCAGCTAGAGTTGGTGTTGCTACTGGTCGTCATT 417
Query 481 TAGCTGAGCTTTGTCGTGATGAGTATCCTACTTGGGCTAGGTATGTGCTTTGGTCTATGG 540
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 418 TAGCTGAGCTTTGTCGTGATGAGTATCCGACTTGGGCTAGGTATGTGCTTTGGTCTATGG 477
Query 541 CGGAACTTGCTTTGATTGGTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CGGAACTTGCTTTGATTGGTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTATTC 537
Query 601 AGATTCTTAGCCGTGGCT-TCTTGCCTCTTTGGGCTGGTGTTGTTATTACTGCTTCCGAT 659
|||||||||||||||| | ||||||||||||||||||||||||||||||| ||||| |||
Sbjct 538 AGATTCTTAGCCGTGG-TGTCTTGCCTCTTTGGGCTGGTGTTGTTATTACGGCTTCGGAT 596
Query 660 TGttttttatttttGTTTCTAGAGAATTACGGTGTGAGGAAGTTAGAAGCTGTTTTTGCA 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 TGTTTTTTATTTTTGTTTCTAGAGAATTACGGTGTGAGGAAGTTAGAAGCTGTTTTTGCA 656
Query 720 GTTTTGATCGCAACTATGGGTTTGTCCTTTGCTTGGATGTTTGGTGAAACAAAACCGAGT 779
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 657 GTTTTGATCGCAACTATGGGTTTGTCCTTTGCTTGGATGTTTGGTGAAACCAAGCCGAGT 716
Query 780 GGGAAAGAACTTATGATAGGTATTTTACTACCGAGACTTAGCTCAAAGACAATTAGGCAA 839
||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||
Sbjct 717 GGGAAAGAACTTATGATAGGTATTTTACTACCGAGGCTTAGCTCGAAGACAATTAGACAA 776
Query 840 GCTGTAGGTGTTGTTGGCTGTGTTATAATGCCTCACAATGTGTTTTTGCATTCGGCTCTT 899
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 777 GCAGTAGGTGTTGTTGGCTGTGTCATAATGCCTCACAATGTGTTTTTGCATTCGGCTCTT 836
Query 900 GTACAATCGAGGAAAATCGATCCGAAGAGGAAATCCCGGGTTCAAGAAGCGCTTAATTAC 959
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 837 GTACAATCGAGGAAAATCGATCCAAAGAGGAAATCCCGGGTTCAAGAGGCGCTTAATTAC 896
Query 960 TATTTGATCGAGTCATCCGTCGCACTTTTCATCTCCTTCATGATTAACTTGTTTGTGACT 1019
|||||||||||||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 897 TATTTGATCGAGTCATCCGTAGCCCTTTTCATCTCCTTCATGATTAACCTGTTTGTGACT 956
Query 1020 ACTGTCTTTGCAAAGGGGTTTTATGGAACTGAGAAAGCTAATAACATTGGCCTAGTTAAT 1079
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 ACTGTCTTTGCAAAGGGATTTTATGGAACTGAGAAAGCTAATAACATTGGCCTAGTTAAT 1016
Query 1080 GCTGGTCAGTATCTTCAAGAAAAGTTTGGAGGCGGGCTTCTTCCGATTCTTTATATCTGG 1139
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1017 GCTGGTCAGTATCTTCAAGAAAAGTTTGGAGGTGGGCTTCTTCCGATTCTTTATATATGG 1076
Query 1140 GGTATCGGGTTGTTAGCAGCCGGACAAAGCAGTACGATAACTGGTACATATGCTGGACAG 1199
|| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1077 GGAATCGGGTTGTTAGCAGCCGGACAGAGCAGTACAATAACTGGTACATATGCTGGACAG 1136
Query 1200 TTTATAATGGGCGGTTTTCTGAATCTCCGGCTTAAGAAATGGATGAGGGCAGTAATAACA 1259
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1137 TTTATAATGGGCGGTTTTCTGAACCTCCGGCTTAAGAAATGGATGAGGGCAGTAATAACA 1196
Query 1260 AGAAGCTGTGCTATTGTGCCTACAATGATTGTGGCAATCGTGTTCAATACTTCTGAAGCT 1319
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1197 AGAAGCTGTGCTATTGTGCCAACCATGATTGTGGCAATCGTGTTCAATACTTCTGAAGCT 1256
Query 1320 TCCTTGGATGTTTTGAATGAATGGCTCAATGTCCTTCAGTCTGTACAAATTCCTTTTGCT 1379
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1257 TCCTTGGATGTTTTGAATGAATGGCTCAATGTGCTTCAGTCTGTACAAATTCCTTTTGCT 1316
Query 1380 CTTCTCCCTCTTCTAACCTTGGTATCCAAAGAAGAAATTATGGGAGACTTCAAGATTGGG 1439
||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1317 CTTCTGCCTCTTCTAACCTTGGTATCTAAAGAAGAAATTATGGGAGACTTCAAGATTGGT 1376
Query 1440 CCTATTCTCCAGAGAATAGCTTGGACTGTGGCTGCACTTGTAATGATCATCAATGGGTAT 1499
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1377 CCCATTCTCCAGAGAATAGCTTGGACTGTGGCTGCACTTGTAATGATCATCAACGGGTAT 1436
Query 1500 CTTCTGTTGGATTTCTTTGTATCAGAAGTCGACGGGTTTCTGTTTGGAGTTACGGTCTGC 1559
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1437 CTTCTGTTGGATTTCTTTGTATCAGAAGTCGACGGGTTTATGTTTGGAGTTACGGTCTGC 1496
Query 1560 GTCTGGACGACTGCTTATATCGCCTTTATAGTGTACCTCATTTCACACAGCAACTTTTTT 1619
|||||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1497 GTCTGGACAACTGCTTATATCGCTTTTATAGTCTACCTCATTTCACACAGCAACTTTTTT 1556
Query 1620 CCTTCTCCTTGGTCATCCTCTTCCATAGAACTTCCCAAAAGAGTGTCCGTCTCCAATAGC 1679
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1557 CCTTCTCCTTGGTCTTCCTCTTCCATAGAACTTCCCAAAAGAGTGTCCGTCTCCGATAGC 1616
Query 1680 TAGTAGCTGCACAAAAATAACTGCCCT 1706
||| |||||||||||||||||||||
Sbjct 1617 TAG---CTGCACAAAAATAACTGCCCT 1640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72219104520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5