BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47250.1
Length=1051
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473874 jgi|Araly1|473874|fgenesh2_kg.1__3828__AT1G47250.1 1432 0.0
> Ahg473874 jgi|Araly1|473874|fgenesh2_kg.1__3828__AT1G47250.1
Length=993
Score = 1432 bits (775), Expect = 0.0
Identities = 868/913 (95%), Gaps = 6/913 (1%)
Strand=Plus/Plus
Query 40 AAAGATGTTCAGGAACCAGTACGACACAGATGTGACAACATGGAGTC-CC-ACAGGTCGA 97
|||||||||||||||||||||||||||||||||||| |||| | ||| || |||||||||
Sbjct 21 AAAGATGTTCAGGAACCAGTACGACACAGATGTGACTACAT-G-GTCACCAACAGGTCGA 78
Query 98 CTATTCCAAGTCGAATACGCCATGGAAGCTGTGAAACAAGGCTCCGCAGCAATAGGACTC 157
||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 79 CTATTCCAAGTCGAATACGCCATGGAAGCTGTGAAGCAAGGCTCAGCCGCAATCGGACTT 138
Query 158 AGATCTCGCTCTCATGTCGTCCTCGCTTGTGTCAACAAAGCACAATCAGAGCTCTCTTCT 217
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 139 AGATCTCGCTCACATGTCGTCCTCGCTTGTGTCAACAAAGCACAATCAGAGCTCTCTTCT 198
Query 218 CATCAAAGGAAGATCTTTAAAGTCGATGATCATATTGGTGTTGCTATTGCTGGTCTCACT 277
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 199 CATCAAAGAAAGATCTTTAAAGTCGATGATCATATTGGTGTTGCTATTGCTGGTCTAACT 258
Query 278 GCTGATGGTCGTGTTCTCTCTCGATATATGAGATCTGAGTCTATTAATCACTCTTTTACT 337
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 259 GCTGATGGTCGTGTTCTGTCTCGTTATATGAGATCTGAGTCTATTAATCACTCTTTTACT 318
Query 338 TATGAGTCTCCTCTTCCTGTTGGTCGTCTTGTTGTTCATCTTGCTGATAAAGCTCAGGTA 397
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 319 TATGAGTCTCCTCTTCCTGTTGGTCGTCTTGTTGTTCGTCTTGCTGATAAAGCTCAGGTA 378
Query 398 TGTACCCAACGATCATGGAAACGGCCTTATGGTGTGGGTTTGCTGGTAGGTGGATTGGAC 457
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 379 TGTACCCAACGTTCATGGAAAAGGCCTTATGGTGTTGGTTTGCTGGTAGGTGGATTGGAC 438
Query 458 GAGTCAGGAGCTCACCTCTACTACAACTGCCCTAGCGGAAACTACTTTGAATATCAAGCA 517
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 GAGTCAGGAGCTCACCTCTACTACAACTGCCCTAGCGGAAACTACTTTGAATATCAAGCA 498
Query 518 TTCGCTATCGGGTCTCGTTCACAAGCTGCGAAAACCTATCTGGAGCGCAAATTCGAGAGC 577
|| ||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 499 TTTGCTATTGGGTCTCGTTCACAAGCTGCGAAAACATATCTGGAACGCAGATTCGAGAGC 558
Query 578 TTCCAAGAATCATCAAAAGAAGATCTGATAAAAGATGCTATTATGGCCATAAGGGAAACT 637
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 559 TTCCAAGAATCATCAAGAGAAGATCTGATCAAAGATGCTATTATGGCCATAAGGGAAACA 618
Query 638 TTGCAAGGGGAAACACTGAAGAGCTCGCTCTGCACTGTTTCTGTTCTAGGAGTCGATGAA 697
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 619 TTGCAAGGGGAAACACTGAAGAGCTCACTCTGCACTGTTTCTGTTCTAGGAGTCGATGAA 678
Query 698 CCATTCCATTTCTTGGACCAGGAAAGCATTCAAAAGGTGATTGATACGTTTGAGAAGGTT 757
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 679 CCCTTCCATTTCTTGGACCAGGAAAGCATACAAAAGGTGATTGATACGTTTGAGAAGGTT 738
Query 758 CCTGAGGAAGAGGAAGATGCTGGTGAGGGTGAGGCCGAACCCGAAGCTGCTCCTGGTGCT 817
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 CCCGAGGAAGAGGAGGATGCTGGTGAGGGTGAGGCCGAACCCGAAGCTGCTCCTGGTGCT 798
Query 818 GCTGGAACTGGTGAACAAGGTGGTTCAGGTGATCAAGATGTTGCACCAATGGAAATTTGA 877
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GCTGGAACTGGTGAACAAGGTGGTTCAGGTGATCAAGATGTTGCACCAATGGAAATTTGA 858
Query 878 GCAAGAGGGAATGA-GTTCAAAGTTGGATTTTCTAACCAATTTTCTTGTGTGTAGCTCTT 936
||||| |||||| | ||| |||||||| ||||| || || || ||||||| ||||||||
Sbjct 859 GCAAGTGGGAAT-ATGTTAAAAGTTGGGTTTTCAAATTAACTTGCTTGTGTTTAGCTCTT 917
Query 937 TGATATGTTCCAA 949
|| | ||||||||
Sbjct 918 TGGTCTGTTCCAA 930
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39114112842
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5