BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47260.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923010 jgi|Araly1|923010|scaffold_104291.1 898 0.0
Ahg473889 jgi|Araly1|473889|fgenesh2_kg.1__3843__AT1G47420.1 219 5e-56
> Ahg923010 jgi|Araly1|923010|scaffold_104291.1
Length=811
Score = 898 bits (486), Expect = 0.0
Identities = 534/557 (96%), Gaps = 4/557 (1%)
Strand=Plus/Plus
Query 119 ATCGGAGAATCACaaaaaaaTGGGAACCCTAGGACGAGCAATTTACACTGTGGGTAACTG 178
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 4 ATCGGAGAATCAC--AAAAATGGGAACCCTAGGAAGAGCAATTTACACTGTGGGTAACTG 61
Query 179 GATTCGTGGAACTGGTCAAGCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGTCACCG 238
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 62 GATTCGTGGAACTGGTCAAGCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCG 121
Query 239 TATCGAGGAACATCTGTCGAGGCATCGGACGTTGATGAATGTGTTTGATAAATCACCATT 298
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 122 CATCGAGGAACATCTGTCGAGGCATCGGACGTTGATGAATGTGTTTGATAAATCTCCATT 181
Query 299 GGTGGATAAAGATGTGTTTGTGGCTCCGAGTGCTTCTGTTATTGGTGATGTTCAGATCGG 358
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 182 GGTTGATAAAGATGTGTTTGTTGCTCCGAGTGCTTCTGTTATTGGTGATGTTCAGATCGG 241
Query 359 AAAAGGCTCGTCGATTTGGTATGGCTGTGTTCTTCGAGGTGATGTGAATAACATCAGTGT 418
||||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 242 AAAAGGCTCCTCCATTTGGTATGGTTGTGTTCTTCGAGGTGATGTGAATAACATCAGTGT 301
Query 419 TGGATCTGGGACGAATATCCAAGATAATACGCTTGTACATGTTGC-AAAGACCAACATAA 477
|||||| ||||||||||||||||| |||||||||||||||||||| ||| ||||||||||
Sbjct 302 TGGATCCGGGACGAATATCCAAGACAATACGCTTGTACATGTTGCGAAA-ACCAACATAA 360
Query 478 GTGGCAAGGTTCTACCTACTCTGATTGGGGACAATGTAACAGTAGGTCACAGTGCTGTCA 537
||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||
Sbjct 361 GTGGCAAGGTTCTACCTACACTAATTGGGGACAATGTAACAGTAGGTCATAGTGCTGTCA 420
Query 538 TTCATGGGTGTACTGTTGAGGATGATGCTTTTGTTGGTATGGGAGCAACACTACTTGATG 597
||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||
Sbjct 421 TTCATGGGTGTACTGTTGAGGATGAGGCTTTTGTTGGCATGGGAGCTACACTACTTGATG 480
Query 598 GTGTGGTGGTTGAGAAACATGCCATGGTTGCTGCTGGTTCTCTTGTGAAACAGAACACGC 657
|||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 481 GTGTTGTGGTTGAGAAACATGCCATGGTTGCTGCTGGTTCCCTTGTGAAACAGAACACGC 540
Query 658 GAATCCCTTCTGGAGAG 674
|||||||||||||||||
Sbjct 541 GAATCCCTTCTGGAGAG 557
Score = 409 bits (221), Expect = 3e-113
Identities = 243/254 (96%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 742 AGTCAGCAAAGAATTACATCAATCTCGCACAGATTCACGCCTCAGAGAATTCAAAGTCAT 801
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AGTCAGCAAAGAACTACATCAATCTCGCACAGATTCACGCCTCAGAGAATTCAAAGTCAT 615
Query 802 TTGAGCAGATCGAGGTTGAGAGAGCGCTTAGGAAGAAGTATGCACGCAAGGACGAGGATT 861
|||| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 616 TTGATCAGATTGAGGTTGAGAGAGCGCTCAGGAAGAAGTATGCACACAAGGACGAGGATT 675
Query 862 ACGATTCAATGCTTGGGATTACCCGTGAAACTCCACCGGAGTTGATTCTTCCCGACAATG 921
|||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 676 ACGATTCAATGCTTGGAATTACCCGTGAAACCCCACCCGAGTTGATTCTTCCCGACAATG 735
Query 922 TCTTACCAGGTGGTAAACCCGTCGCCAAGGTTCCGTCTACTCAGTACTTCTAATTCCAAT 981
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 736 TCTTACCAGGTGGTAAACCCGTCGCCAAGGTTCCGAGTACTCAGTACTTCTAATTCCAAT 795
Query 982 CTCAGGTTGTTTTT 995
|||||||||||||
Sbjct 796 ATCAGGTTGTTTTT 809
> Ahg473889 jgi|Araly1|473889|fgenesh2_kg.1__3843__AT1G47420.1
Length=1050
Score = 219 bits (118), Expect = 5e-56
Identities = 152/169 (90%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 134 aaaaaTGGGAACCCTAGGACGAGCAATTTACACTGTGGGTAACTGGATTCGTGGAACTGG 193
|||||||||||||||||||||||| ||| || || | |||||| ||||||||| |||||
Sbjct 5 AAAAATGGGAACCCTAGGACGAGCGATTCACTCTCTCGGTAACCGGATTCGTGCAACTGC 64
Query 194 TCAAGCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGTCACCGTATCGAGGAACATCT 253
||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 65 CCAATCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCACATCGAGGAACATCT 124
Query 254 GTCGAGGCATCGGACGTTGATGAATGTGTTTGATAAATCACCATTGGTG 302
||||||||||||| ||||||||| |||| |||||||||| |||||||||
Sbjct 125 GTCGAGGCATCGGTCGTTGATGACTGTGGTTGATAAATCTCCATTGGTG 173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5