BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G47265.1

Length=594
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945462 jgi|Araly1|945462|scaffold_701691.1                        169    3e-41


> Ahg945462 jgi|Araly1|945462|scaffold_701691.1
Length=331

 Score =  169 bits (91),  Expect = 3e-41
 Identities = 154/183 (84%), Gaps = 9/183 (5%)
 Strand=Plus/Plus

Query  275  CGGATCGCCTCTTCCTCCTCAAAACTGCTCTACGGTGGCAGGA-GGACAACGGATCCTGA  333
            |||||| | |||||||||||||||||||||||||||||| ||| || |||||||||||| 
Sbjct  147  CGGATCTCTTCTTCCTCCTCAAAACTGCTCTACGGTGGCGGGATGG-CAACGGATCCTGG  205

Query  334  ATTACCATCTCCGTTCG--ACGAATCTCGTCTAGGCTCCCCAAAGGGTTTCTGTTCCGGT  391
            || || |||||||||||  |||  | | ||| |||||| ||  ||| |||||||||||| 
Sbjct  206  ATCACTATCTCCGTTCGGCACGCGT-T-GTCCAGGCTCACCGGAGGTTTTCTGTTCCGGC  263

Query  392  GAGATTCTGCAATTCTTGGACGGCGGCTCAGATCGTGTTTTACGAT-ATGAGATTAGGAT  450
            ||| || |||| |||||||||||||||||  |||||||| |||||| | ||||||||| |
Sbjct  264  GAGTTTATGCAGTTCTTGGACGGCGGCTCT-ATCGTGTTCTACGATTA-GAGATTAGGGT  321

Query  451  TTT  453
            |||
Sbjct  322  TTT  324



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21748685730


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5