BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47270.1
Length=1678
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473876 jgi|Araly1|473876|fgenesh2_kg.1__3830__AT1G47270.1 2111 0.0
> Ahg473876 jgi|Araly1|473876|fgenesh2_kg.1__3830__AT1G47270.1
Length=1613
Score = 2111 bits (1143), Expect = 0.0
Identities = 1424/1549 (92%), Gaps = 61/1549 (4%)
Strand=Plus/Plus
Query 155 AGAGAAGGCTTTTAATTTCAAATTCCTCGCTGAATTTTTCTTCTTCTTCTTCGTCTTCAT 214
||||||||||||||||||||||||| ||| |||| |||||||||||| | |||||||
Sbjct 101 AGAGAAGGCTTTTAATTTCAAATTCATCGGTGAA---TTCTTCTTCTTC-T--TCTTCAT 154
Query 215 CGGAAGAAGAAGAATCC-AAAAACTTATCTCATCTGC-AGAAATATAATTGTGCTTCCCC 272
| | |||||||||||| ||||||||||||||||||| | |||| |||||||||||||||
Sbjct 155 C-G--GAAGAAGAATCCAAAAAACTTATCTCATCTGCAAAAAAT-TAATTGTGCTTCCCC 210
Query 273 ATGGATTTGTCGCTTTTGTTGCCAAAACGGAGCTGGGAAATTTCTGGGGGAGCAGATAAA 332
||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct 211 ATGGATTTGTCGC--TT-TT------------CTGGGAAATTTCTGGGGGAGCATATAAA 255
Query 333 ATCAGCAGAGTAGCAATGTCATTGAAGAAC----------A---TA--GTGAAGAACAAA 377
||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 256 TTCAGCAGAGTAGCAATGTCATTGAAGAACATAGTAAGAGAGTTTAGGGTGAAGAACAAA 315
Query 378 TACAAAGCTATTGGTAGAAGAGGGAGGTCACACATTGCACCAGAAGGATCATCTGTGTCT 437
| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 316 TGCAAAGCTATTGGTAGACGAGGGAGGTCACATATTGCACCAGAAGGATCATCTGTGTCA 375
Query 438 TCTTCTTTATCAACTAATGAAGGTTTAAACCAGAGTATTTGGGTTGATTTGCCTCCAGAG 497
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 376 TCTTCTTTATCAACTAATGAAGGTTTAAATCAGAGTATTTGGGTTGATTTGCCTCCAGAG 435
Query 498 TTACTTCTTGATATAATCCAAAGGATTGAGTCTGAACAGAGTTTATGGCCGGGGAGGAGA 557
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||
Sbjct 436 TTACTTCTTGATATAATCCATAGGATTGAGTCTGGACAGACTTTATGGCCGGCGAGAAGA 495
Query 558 GATGTTGTTGCTTGTGCTTCGGTTTGTAAGTCATGGAGGGAGATGACTAAAGAAGTTGTT 617
||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 496 GATGTCGTTGCTTGTGCTTCGGTTTGTAGGTCTTGGAGGGAGATGACTAAAGAAGTTGTT 555
Query 618 AAAGTTCCTGAGCTCTCTGGTTTGATCACGTTTCCGATTTCTTTAAGACAGCCTGGACCT 677
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 556 CAAGTTCCTGAGGTCTCTGGTTTGCTTACGTTTCCGATTTCTTTAAGACAGCCTGGTCCT 615
Query 678 AGAGATGCTCCAATTCAATGCTTTATTAAACGTGAAAGAGCTACGGGGATATACCGTCTC 737
||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 616 AGAGATGATCCAATTCAATGCTTTATTAAACGGGAAAGAGCTACGGGGATTTACCGTCTC 675
Query 738 TATCTTGGTTTAAGCCCTGCTCTTTCCGGTGACAAGAGTAAGTTGTTGTTATCTGCAAAG 797
||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 676 TATCTCGGTTTAAGCCCTGCTCTTTCTGGTGATAAGAGTAAGCTGTTGTTATCTGCAAAG 735
Query 798 AGAGTCAGGAGAGCGACGGGTGCGGAGTTTGTTGTATCGTTATCGGGGAATGACTTCTCG 857
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 736 AGAGTCAGGAGAGCGACGGGTGCGGAGTTTGTTGTATCCTTATCGGGAAATGACTTCTCA 795
Query 858 AGAAGTAGTAGTAATTACATAGGAAAACTGAGATCAAATTTCCTGGGAACGAAGTTCACA 917
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 796 AGAAGTAGTAGTAATTACATAGGAAAACTGAGATCTAATTTCCTGGGAACCAAGTTCACA 855
Query 918 GTCTACGAAAACCAACCTCCTCCGTTTAACC-GAAAGCTCCCACCATCGATGCAAGTGTC 976
||||||||||||||||||||||||| ||||| |||| || |||||||| |||||||||||
Sbjct 856 GTCTACGAAAACCAACCTCCTCCGTGTAACCGGAAA-CTTCCACCATCAATGCAAGTGTC 914
Query 977 TCCATGGGTATCGTCGTCATCTAGTAGTTACAACATAGCTTCAATCTTGTATGAGCTGAA 1036
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 915 TCCATGGGTATCGTCGTCATCTAGTAGTTATAACATAGCTTCCATCTTGTATGAGCTGAA 974
Query 1037 TGTTCTGAGAACCAGAGGTCCAAGAAGAATGCAATGTATAATGCACAGTATCCCGATTTC 1096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 975 TGTTCTGAGAACCAGAGGTCCAAGAAGAATGCAATGTATAATGCACAGTATCCCGATTTC 1034
Query 1097 AGCGATTCAAGAAGGCGGCAAAATCCAGTCGCC---AACGGAGTTCACAAACCAAGGAAA 1153
|| ||||||||||||||||||||||||||||| ||| || |||| ||||||||||||
Sbjct 1035 GGCAATTCAAGAAGGCGGCAAAATCCAGTCGCCGCCAACCGACTTCATAAACCAAGGAAA 1094
Query 1154 GAAGAAGAAGAAGCCGCTGATGGATTTCTGCTCAGGGAACCTGGGAGGAGAATCCGTTAT 1213
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1095 GAAGAAGAAGAAGCCGCTGATGGATTTCTGCTCAGGGAACCTGGGAGGAGAATCTGTTGT 1154
Query 1214 AAAAGAACCATTAATTCTGAAAAACAAGTCGCCGAGATGGCACGAACAGCTTCAGTGCTG 1273
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1155 AAAAGAACCATTAATTCTGAAAAACAAGTCTCCGAGATGGCACGAACAGCTCCAATGCTG 1214
Query 1274 GTGTCTAAACTTCAAAGGTCGAGTCACAGTCGCCTCGGTGAAAAACTTCCAGCTAGTGGC 1333
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1215 GTGTCTCAACTTCAAAGGTCGAGTCACAGTCGCCTCGGTGAAAAACTTTCAGCTAGTGGC 1274
Query 1334 AGCTGCTGCAGAAGCAGGGAAGAACATGAACATACCAGAAGAGGAACAAGATAGAGTGAT 1393
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1275 AGCTGCTGCGGAAGCAGGGAAGAACATGAACATCCCAGAAGAGGAACAAGAGAGAGTGAT 1334
Query 1394 ATTACAGTTTGGGAAGATAGGCAAAGACATTTTCACAATGGATTATCGTTACCCGATCTC 1453
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 ATTACAGTTTGGGAAGATTGGCAAAGACATTTTCACAATGGATTATCGTTACCCGATCTC 1394
Query 1454 TGCATTCCAAGCTTTTGCTATTTGTTTAAGCAGCTTCGACACGAAGCCAGTCTGCGAATG 1513
|||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1395 TGCATTCCAAGCATTTGCCATTTGTTTAAGCAGCTTCGACACAAAGCCGGTCTGCGAATG 1454
Query 1514 AAGCAAAACATATCATATCAAATTATATTCTTCTATTTGCAGTTTGTGTGGTTTAAT--- 1570
||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1455 AAGCAAA-CATATCATATCAA-TTATATTCTTCCATTTGCAGTTTGTGTGGTTTAATCAA 1512
Query 1571 -GTACATACTTTTCCCTCTTGGAGCAATCAAACAATCAGATCttttttttcattctaaaa 1629
||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 1513 TGTACATACTTTTCCCTCTTGGAGCAATCAAACAATCAGAACTTTTT---CATTC-AAA- 1567
Query 1630 actttaatttcttcttaattttttaattaaaagtaattaacgtttGGTT 1678
||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 1568 -CTTTAATTTCTTCTTAAGTTT--AATTAAAAGTAATTAACTTTTGGTT 1613
Score = 150 bits (81), Expect = 3e-35
Identities = 99/107 (93%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 8 CTTTTTCTTCTTCC-TCCTCGAAATCATTGCGGTTACTGTCGTCTTCCTCCTTCCTCTCC 66
||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 1 CTTCTTCTTC-TCCTTCCTCGAAATTATTGCGGTTACTGTCGTCTTCCTCCTTCCTC-C- 57
Query 67 TCTTCGGAATCGAAGCTCACGACGGCGACAGTAACGGCATCGGAGAG 113
||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 58 TCTCCGGAATCGAAGCTCACGACGGCGACGGTAACGGCATCGGAGAG 104
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62925084740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5