BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G47271.1 Length=625 Score E Sequences producing significant alignments: (Bits) Value Ahg314186 jgi|Araly1|314186|fgenesh1_pm.C_scaffold_1002966 905 0.0 > Ahg314186 jgi|Araly1|314186|fgenesh1_pm.C_scaffold_1002966 Length=579 Score = 905 bits (490), Expect = 0.0 Identities = 552/582 (95%), Gaps = 3/582 (1%) Strand=Plus/Plus Query 44 ATGAAAGCTTTTGTGAGAGGACTATTAGCAAGAGCTAATGAGGTCCCAAAGATTCATCAG 103 ||||||||||||||||||||| |||||||||||||| |||| |||||||||| | |||| Sbjct 1 ATGAAAGCTTTTGTGAGAGGATTATTAGCAAGAGCTTATGAAGTCCCAAAGA-T--TCAG 57 Query 104 AGGAAGGTATCGGCCGGTTTTGGTTGCTTAACTTCGCCTCCGCCGCCGGAGAAAGGGTTG 163 | ||| ||||||||| ||||||||||| |||| ||||||||||| ||||||||||| ||| Sbjct 58 ACGAAAGTATCGGCCAGTTTTGGTTGCGTAACGTCGCCTCCGCCACCGGAGAAAGGATTG 117 Query 164 GAGAATCTGACGGTGGCGGATGTGCTCTCCACGAAGGATACTGACATTGATACGTGGATC 223 |||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||| Sbjct 118 GAGAATCTGACGGTGGCGGACGTGCTCTCCACAAAGGACGCTGACGTTGATACGTGGATC 177 Query 224 TCGTGCCGTACGAATGACACTGTTTCTGACGCTGTTAAAAATATGGCAAAGCATAATATT 283 || ||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 178 TCTTGCCGTACGAACGACACTGTTTCGGACGCTGTTAAGAATATGGCAAAGCATAATATT 237 Query 284 GGATCGTTGGTCGTGTTAGAACCTGGAGACCAACAATATATAGCAGGAATTGTCACAGAG 343 |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 238 GGATCGTTGGTCGTGTTAAAACCTGGAGACCAACAATATATCGCAGGAATTGTCACAGAG 297 Query 344 AGAGACTATATGAAAAAGATCATTGGGGCAGGAAGATCATCAAAGCTTACAAAAGTTGGA 403 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 298 AGAGACTATATGAAAAAGATCATTGGGGCAGGAAGATCATCAAAGCTTACAAAAGTTGGA 357 Query 404 GAAGTTATGACAGACGAGAGCAAGTTGGTTACTGTTTCATCTGGGACAAACATAATCAAA 463 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 358 GACGTTATGACAGACGAGAGCAAGTTGGTCACTGTTTCATCTGGGACAAACATAATCAAA 417 Query 464 GCAATGCAGCTTATGTCAGAGAATCACATAAGGCATGTACCGGTGATTGACGGAAAGATA 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 418 GCAATGCAGCTTATGTCAGAGAATCACATAAGGCATGTACCGGTGATTGACGGAAAGATA 477 Query 524 GTGGGACTGATCTCTATGGTTGATGTGGTTAAAGCCATTGTGGACCATCAAAATGGAGAG 583 || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 478 GTAGGACTGATCTCTATGGTTGATGTGGTTAGAGCCATTGTGGACCATCAAAATGGAGAG 537 Query 584 CTCAAACGTTTGAATGAATTCATCAAAGGAGACTATTACTAG 625 |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 538 CTCAAACGCTTGAATGAATTCATCAAAGGAGACTATTATTAG 579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 22873750200 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5