BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47271.1
Length=625
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314186 jgi|Araly1|314186|fgenesh1_pm.C_scaffold_1002966 905 0.0
> Ahg314186 jgi|Araly1|314186|fgenesh1_pm.C_scaffold_1002966
Length=579
Score = 905 bits (490), Expect = 0.0
Identities = 552/582 (95%), Gaps = 3/582 (1%)
Strand=Plus/Plus
Query 44 ATGAAAGCTTTTGTGAGAGGACTATTAGCAAGAGCTAATGAGGTCCCAAAGATTCATCAG 103
||||||||||||||||||||| |||||||||||||| |||| |||||||||| | ||||
Sbjct 1 ATGAAAGCTTTTGTGAGAGGATTATTAGCAAGAGCTTATGAAGTCCCAAAGA-T--TCAG 57
Query 104 AGGAAGGTATCGGCCGGTTTTGGTTGCTTAACTTCGCCTCCGCCGCCGGAGAAAGGGTTG 163
| ||| ||||||||| ||||||||||| |||| ||||||||||| ||||||||||| |||
Sbjct 58 ACGAAAGTATCGGCCAGTTTTGGTTGCGTAACGTCGCCTCCGCCACCGGAGAAAGGATTG 117
Query 164 GAGAATCTGACGGTGGCGGATGTGCTCTCCACGAAGGATACTGACATTGATACGTGGATC 223
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct 118 GAGAATCTGACGGTGGCGGACGTGCTCTCCACAAAGGACGCTGACGTTGATACGTGGATC 177
Query 224 TCGTGCCGTACGAATGACACTGTTTCTGACGCTGTTAAAAATATGGCAAAGCATAATATT 283
|| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 178 TCTTGCCGTACGAACGACACTGTTTCGGACGCTGTTAAGAATATGGCAAAGCATAATATT 237
Query 284 GGATCGTTGGTCGTGTTAGAACCTGGAGACCAACAATATATAGCAGGAATTGTCACAGAG 343
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 238 GGATCGTTGGTCGTGTTAAAACCTGGAGACCAACAATATATCGCAGGAATTGTCACAGAG 297
Query 344 AGAGACTATATGAAAAAGATCATTGGGGCAGGAAGATCATCAAAGCTTACAAAAGTTGGA 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 298 AGAGACTATATGAAAAAGATCATTGGGGCAGGAAGATCATCAAAGCTTACAAAAGTTGGA 357
Query 404 GAAGTTATGACAGACGAGAGCAAGTTGGTTACTGTTTCATCTGGGACAAACATAATCAAA 463
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 358 GACGTTATGACAGACGAGAGCAAGTTGGTCACTGTTTCATCTGGGACAAACATAATCAAA 417
Query 464 GCAATGCAGCTTATGTCAGAGAATCACATAAGGCATGTACCGGTGATTGACGGAAAGATA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GCAATGCAGCTTATGTCAGAGAATCACATAAGGCATGTACCGGTGATTGACGGAAAGATA 477
Query 524 GTGGGACTGATCTCTATGGTTGATGTGGTTAAAGCCATTGTGGACCATCAAAATGGAGAG 583
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 478 GTAGGACTGATCTCTATGGTTGATGTGGTTAGAGCCATTGTGGACCATCAAAATGGAGAG 537
Query 584 CTCAAACGTTTGAATGAATTCATCAAAGGAGACTATTACTAG 625
|||||||| ||||||||||||||||||||||||||||| |||
Sbjct 538 CTCAAACGCTTGAATGAATTCATCAAAGGAGACTATTATTAG 579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22873750200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5