BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47278.2
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314187 jgi|Araly1|314187|fgenesh1_pm.C_scaffold_1002967 422 2e-117
> Ahg314187 jgi|Araly1|314187|fgenesh1_pm.C_scaffold_1002967
Length=243
Score = 422 bits (228), Expect = 2e-117
Identities = 238/243 (98%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 149 ATGGGGAGAAAGGCTGGAAATTTGTACATAAACCCGAAAAAGCTCGGGAATTTGGCGAAA 208
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGGGAGAAAGGCTGGAAATTTGTACATAAACCCGAAAAAGCTCGGGAATCTGGCGAAA 60
Query 209 CCGTGTATGAAGGAAATGGTATCGTTCTTGAACTGTATGGCTCTTAACAATATCAAAGAT 268
|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 61 CCGTGTATGAAGGAAATGGTGTCGTTCTTGAACTGTATGGCGCTTAACAATATCAAAGAT 120
Query 269 GATAAATGTGAGAAACAGAAGCAACTCCTGAGTGTTTGTATGCAAGGCCAGTCGGATCAT 328
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 121 GATAAATGTGAGAAACAGAAGCAGCTCCTGAGTGTTTGTATGCAGGGCCAGTCGGATCAT 180
Query 329 AAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGGCTAACCCGTGGAAGAAAG 388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGAACAAGTCTTGGGGTAACATTAACTACCATTTGCAGAGGCTAACCCGTGGAAGAAAG 240
Query 389 TAA 391
|||
Sbjct 241 TAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20604018060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5