BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47280.1
Length=524
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314188 jgi|Araly1|314188|fgenesh1_pm.C_scaffold_1002968 322 2e-87
> Ahg314188 jgi|Araly1|314188|fgenesh1_pm.C_scaffold_1002968
Length=243
Score = 322 bits (174), Expect = 2e-87
Identities = 220/243 (91%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 97 ATGGAGAAAGTCAAATTCTTTGCAATTATCTTTACGGTGTCAATGGTTATGACAATGGTT 156
||||| ||||| ||||||||| | || ||| ||| |||| ||||||||||||||| ||||
Sbjct 1 ATGGAAAAAGTAAAATTCTTTACGATAATCCTTATGGTGACAATGGTTATGACAAGGGTT 60
Query 157 TCGGCGGAAGAGTTACCGGTGAAAGTGACGGGCAATGAGATGACTCTTGCGGCGGAGGCT 216
||||||||||||||||||||||||||||||| ||||||| |||| ||||| |||||||||
Sbjct 61 TCGGCGGAAGAGTTACCGGTGAAAGTGACGGCCAATGAGGTGACCCTTGCCGCGGAGGCT 120
Query 217 GCCGCTTCGAGTTTCAAAAGCAGCGCCGGAGAGGCTGCTCAAGGAGCCAAGTCATGGGCT 276
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 121 GCCGCTTCGAGTTTTAAAAGCAGCGCCGGAGAGGCTGCTCAAGGGGCAAAGTCATGGGCT 180
Query 277 GATTGGGCTACTAGCAAAATCAGGCATCTTGGCAGCTTGGAGAAAACACCCGGATCAGAT 336
|||||||||||||||||||||||||||| |||| | || | |||||||||||| |||||
Sbjct 181 GATTGGGCTACTAGCAAAATCAGGCATCCTGGCGGTTTAGTGAAAACACCCGGTTCAGAG 240
Query 337 TGA 339
|||
Sbjct 241 TGA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19077794500
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5