BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47290.2
Length=1706
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473882 jgi|Araly1|473882|fgenesh2_kg.1__3836__AT1G47290.2 2534 0.0
Ahg481483 jgi|Araly1|481483|fgenesh2_kg.4__543__AT2G26260.1 1070 0.0
> Ahg473882 jgi|Araly1|473882|fgenesh2_kg.1__3836__AT1G47290.2
Length=1647
Score = 2534 bits (1372), Expect = 0.0
Identities = 1559/1649 (95%), Gaps = 13/1649 (1%)
Strand=Plus/Plus
Query 49 TATCATCGAACGCCGTCGCTCTCGCCGTTGACTTCTACCAGTGACCCCAACGCCTTCAAT 108
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 5 TATCATCGAACGCCGTCGCTCTCGCCGTTGACTTCTACTAGTGACCCCAACGCCGTCGAT 64
Query 109 TTCCGCCTCGTCGGATAATTTCATCGGAGAAGACAATGGTGATGGAAGTTACAGAGACTG 168
|||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 65 TTCCGCCTCGCCGGAAAATCTCATTGGAGAAGACAATGGTGATGGAAGTTACAGAGACTG 124
Query 169 AGCGATGGTGCGTTGTAACTGGTGGTAGAGGATTCGCTGCAAGACATCTTGTAGAAATGC 228
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 125 AGCGATGGTGCGTCGTAACCGGTGGTAGAGGATTCGCTGCAAGACATCTTGTGGAAATGC 184
Query 229 TCGTACGTTACCAAATGTTCCACGTTCGTATCGCCGATTTAGCTCCTGCGATAGTGCTCA 288
| ||||||||| | |||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 185 TGGTACGTTACGAGATGTTCCATGTACGTATCGCCGATTTAGCTCCGGCGATAGTGCTCG 244
Query 289 ATCCTCACGAGGAAACTGGAATTCTCGGTGAAGCAATTAGATCCGGTAGAGTTCAATACG 348
| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 245 ACCCTCATGAGGAGACTGGACTTCTCGGTGAAGCAATTAGATCCGGTAGAGTTCAATACG 304
Query 349 TCTCCGCTGATCTTCGGAACAAAACTCAAGTTGTCAAAGGTTTTCAAGGAGCAGAAGTGG 408
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
Sbjct 305 TCTCCGCTGATCTTCGGAACAAATCTCAAGTTGTCAAAGGTTTTCAGGGAGCAGAAGTTG 364
Query 409 TGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGCTTCAGTACTCAGTTA 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 365 TGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGCTTCAGTACTCAGTTA 424
Query 469 ATGTTCAAGGGACAACAAATGTAATTGATGCTTGTATTGAGGTTGGAGTAAAGAGGCTAA 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 425 ATGTTCAAGGGACAACAAATGTAATTGATGCTTGTATTGAGGTTGGAGTAAAGAGACTAA 484
Query 529 TCTATACAAGTTCTCCGAGTGTTGTGTTTGACGGGGTCCATGGTACTTTGAATGCTGATG 588
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 485 TCTATACAAGTTCTCCGAGTGTCGTGTTTGACGGGGTCCATGGTACTTTGAATGCCGATG 544
Query 589 AATCACTGCCGTATCCACCTAAGCATAATGATTCATATTCAGCTACTAAAGCTGAAGGGG 648
||||| ||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 545 AATCAATGCCGTACCCACCCAAGCACAATGACTCATATTCAGCAACTAAAGCTGAAGGGG 604
Query 649 AAGCTTTGATTTTGAAAGCGAATGGAAGAAGTGGACTACTCACTTGTTGCATACGTCCTA 708
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 605 AAGCTTTGATCTTGAAAGCTAATGGAAGAAATGGACTACTCACTTGTTGCATACGTCCTA 664
Query 709 GCAGCATATTTGGTCCTGGTGATAAATTAATGGTTCCATCGCTTGTTACTGCTGCCAGGG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 GCAGCATATTTGGTCCTGGTGATAAATTAATGGTTCCATCGCTTGTTACTGCTGCCAGGG 724
Query 769 CTGGGAAATCCAAGTTCATTATAGGTGATGGGAGTAACTTCTATGATTTCACTTATGTTG 828
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 725 CTGGGAAATCCAAGTTCATTATAGGTGATGGGAGTAACTTTTATGATTTCACTTATGTTG 784
Query 829 AAAATGTTGTGCACGCCCATGTCTGTGCTGAGCGAGCTCTAGCATCAGGAGGAGAAGTAT 888
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 785 AAAATGTTGTGCACGCCCATGTCTGTGCTGAGCGAGCACTAGCATCAGGAGGAGAAGTAT 844
Query 889 GTGCAAAAGCTGCTGGCCAGGCTTACTTCATTACCAACATGGAGCCAATTAAATTTTGGG 948
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 845 GTGCAAAAGCTGCAGGCCAGGCATACTTCATTACCAACATGGAGCCAATTAAATTTTGGG 904
Query 949 AGTTTATGTCACAGCTTCTTGAAGGACTTGGCTATGAGAGGCCAAGTATAAAGATACCTG 1008
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 905 AGTTTATGTCACAGCTTCTTGAAGGACTTGGCTATGCGAGGCCAAGTATAAAGATACCTG 964
Query 1009 CAAGTCTCATGATGCCAATAGCATATCTTGTGGAACTAGCATATAAATTACTCGGACCGT 1068
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 965 CAAGTCTCATGATGCCAATAGCATATCTTGTGGAACTAGCATATAAATTACTCGGACCAT 1024
Query 1069 ATGGGATGAAAGTACCAGTGCTAACACCTTCTAGGGTTAGGCTACTCTCTTGCAACAGAA 1128
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1025 ATGGGATGAAAGTACCAGTGCTAACACCTTCTAGAGTTAGGCTACTCTCTTGCAACAGAA 1084
Query 1129 CATTTGATTCTTCAAAAGCAAAGGATCGTTTAGGCTATTCTCCTGTTGTCCCACTTCAGG 1188
| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1085 CTTTTGATTCTTCAAAAGCAAAGGATCGTTTAGGCTATGCTCCCGTTGTCCCACTTCAGG 1144
Query 1189 AAGGTATAAAGAGGACAATAGATTCATTCTCACACTTGAAAGCTCAAAATCAACCCAAAA 1248
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1145 AAGGTATAAAGAGGACAATAGATTCGTTCTCACACTTGGCAGCTCAAAATCAACCCAAAA 1204
Query 1249 CAGAAGTTACTGAAACAATTCAATGGAAAAAGCAGACTCTCATTGCCATAGTCATTCTGA 1308
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1205 CAGACGTTACTGATACAATTCAATGGAAAAAGCAGACTCTCATTGCCATAGTCATACTGA 1264
Query 1309 TTACTCTCTATCATAACTTTGTTGCAACCACCGGATCATCTTCCGTCATAATAACTGCTG 1368
||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||
Sbjct 1265 TTACTCTCTATCATAACTTTGTTGCAACCACGGGATCTTCTTCCTTCACAATAACTGCTC 1324
Query 1369 TTTCCAAGGTTTTGTTGGTATCATCAATTT-TTATGTTCATCAATGGCATTTTACCAGAG 1427
|||||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||
Sbjct 1325 TTTCCAAGGTTTTGTTGGTATCATCAATTTGTT-TGTTCATCCATGGCATGTTACCAGAG 1383
Query 1428 AAAATGAAAGTGTTCGGGAGCAAGAAGATCGACTAAAGAATACTCCAAATTTGAGCTTTG 1487
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1384 AAAATGAAACTGTTCGGGAGCAAGAAGATCGACTAAAGAAGACTCCAAATTTGAGCTTTG 1443
Query 1488 TGTAAGGTAAACAACGACTTATTTTTTCCTCTATACATTGATAAACATGACTCCTGCCTG 1547
|||||||||||| ||||||||| ||||||||| |||| |||||||| ||||||||| ||
Sbjct 1444 TGTAAGGTAAACGACGACTTATCTTTTCCTCTCTACACTGATAAACGTGACTCCTG--TG 1501
Query 1548 T-G-TAGATGGATGTTGTT-TGGTCTGAGTTTTGCGTCGTTTATTTTACGATTTGTAATT 1604
| | | ||||||||||| | || | ||||||||||||||| |||||||| |||||||||
Sbjct 1502 TAGAT-GATGGATGTTGCTATG-T-TGAGTTTTGCGTCGTGTATTTTACCCTTTGTAATT 1558
Query 1605 TGAACTCTGTAACTGTCGATTTCGGTTACTCTGATACCAAAATCTATGAATTGAT--G-A 1661
| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| | | | |
Sbjct 1559 TCAACTCAGTAACAGTCGATTTCGGTTACTCTGATACCAAAATTTATGAATCGGTTTGGA 1618
Query 1662 TCAATACTTGTGTTTGTCAGCTTAATTTA 1690
|||||||||||||||||| ||||||||||
Sbjct 1619 TCAATACTTGTGTTTGTCCGCTTAATTTA 1647
> Ahg481483 jgi|Araly1|481483|fgenesh2_kg.4__543__AT2G26260.1
Length=1787
Score = 1070 bits (579), Expect = 0.0
Identities = 934/1106 (84%), Gaps = 22/1106 (2%)
Strand=Plus/Plus
Query 158 TACAGAGACTGAGCGATGGTGCGTTGTAACTGGTGGTAGAGGATTCGCTGCAAGACATCT 217
||| ||||| ||||||||||||||||| || ||||||||||||||||| || || |||||
Sbjct 100 TACGGAGACGGAGCGATGGTGCGTTGTTACCGGTGGTAGAGGATTCGCGGCGAGGCATCT 159
Query 218 TGTAGAAATGCTCGTACGTTACCAAATGTTCCA-CGTTCGTATCGCCGATTTAGCTCCTG 276
||| |||||||||||||| ||| ||||||| || ||| || ||||||||||||||||| |
Sbjct 160 TGTTGAAATGCTCGTACGCTACGAAATGTT-CAGCGTCCGCATCGCCGATTTAGCTCCGG 218
Query 277 CGATAGTGCTCAATCCTCACGAGGA-AACTGGAATTCTCGGTGAAGCAATT-AGATCCGG 334
||||| |||| ||||||| || || ||| ||| |||||| |||| ||| ||||| ||
Sbjct 219 CGATAATGCTTGATCCTCATGAAGAGAAC-GGAGTTCTCGACGAAG-GATTAAGATCTGG 276
Query 335 TAGAGTTCAATACGTCTCCGCTGATCTTCG-GAACAAAACTCAAGTTGTCAAAGGTTTTC 393
| | |||||||| |||||||||||||||| | | ||| ||||||| || |||| |||||
Sbjct 277 TCGTGTTCAATATATCTCCGCTGATCTTCGTG-ATAAATCTCAAGTCGTTAAAGCTTTTC 335
Query 394 AAGGAGCAGAAGTGGTGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGC 453
| ||||| || ||||||||||| ||||||||||||||||| || || |||||||| ||||
Sbjct 336 AGGGAGCTGAGGTGGTGTTTCACATGGCAGCTCCAGATTCTTCTATCAACAATCATCAGC 395
Query 454 TTCAGTACTCAGTTAATGTTCAAGGGACAAC-AAATGTAATTGATGCTTGTATTGAGGTT 512
|||||||||| || |||||||||||||| || |||||| |||||||||||| |||| |||
Sbjct 396 TTCAGTACTCGGTGAATGTTCAAGGGAC-ACAAAATGTGATTGATGCTTGTGTTGATGTT 454
Query 513 GGAGTAAAGAGGCTAATCTATACAAGTTCTCCGAGTGTTGTGTTTGACGGGGTCCATGGT 572
|||||||||||||| || || || || ||||| |||||||||||||| || || ||||||
Sbjct 455 GGAGTAAAGAGGCTTATTTACACTAGCTCTCCTAGTGTTGTGTTTGATGGTGTTCATGGT 514
Query 573 ACTTTGAATGCTGA-TGAATCACTGCCGTATCCACCTAAGCATAATGATTCATATTCAGC 631
| ||| |||| | | ||||||| || | || ||| |||||| ||||| |||||||||||
Sbjct 515 ATTTTAAATGGT-AGTGAATCAATGGCTTACCCAATTAAGCACAATGACTCATATTCAGC 573
Query 632 TACTAAAGCTGAAGGGGAAGCTTTGATTTTGAAAGCGAATGGAAGAAGTGGACTACTCAC 691
|||||||||||||| |||| ||||| |||| |||||||| |||| ||||||||||||
Sbjct 574 AACTAAAGCTGAAGGAGAAGAATTGATCATGAACGCGAATGGCAGAAATGGACTACTCAC 633
Query 692 TTGTTGCATACGTCCTAGCAGCATATTTGGTCCTGGTGATAAATTAATGGTTCCATCGCT 751
||||||||||||||| ||||| || |||||||| ||||||| |||| ||||||| || ||
Sbjct 634 TTGTTGCATACGTCCAAGCAGTATTTTTGGTCCCGGTGATAGATTATTGGTTCCCTCACT 693
Query 752 TGTTACTGCTGCCAGGGCTGGGAAATCCAAGTTCATTATAGGTGATGGGAGTAACT-TCT 810
|||| ||||||| |||||||| ||||||||||| |||||||||||||||| ||| | |||
Sbjct 694 TGTTGCTGCTGCTAGGGCTGGAAAATCCAAGTTTATTATAGGTGATGGGAATAA-TCTCT 752
Query 811 ATGATTTCACTTATGTTGAAAATGTTG-TGCACGCCCATGTCTGTGCTGAGCGAGCTCTA 869
|||||||||| || ||||| ||||||| | || |||||||| ||||||||||| ||||||
Sbjct 753 ATGATTTCACCTACGTTGAGAATGTTGCT-CATGCCCATGTTTGTGCTGAGCGTGCTCTA 811
Query 870 GCATCAGGAGGAGAAGTATGTGCAAAAGCTGCTGGCCAGGCTTACTTCATTACCAACATG 929
|| ||||||||||| || | | |||||||||| || ||||| || |||||||||||||||
Sbjct 812 GCTTCAGGAGGAGATGTTTCTACAAAAGCTGCAGGACAGGCATATTTCATTACCAACATG 871
Query 930 GAGCCAATTAAATTTTGGGAGTTTATGTCACAGCTTCTTGAAGGACTTGGCTATGAGAGG 989
|||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||
Sbjct 872 GAGCCAATTAAATTTTGGGAGTTTGTGTCACAGCTCCTTGAAGGACTTGGTTACGAGAGG 931
Query 990 CCAAGTATAAAGATACCTGCAAGTCTCATGATGCCAATAGCATATCTTGTGGAACT-AGC 1048
||||| |||||||| ||||| | |||||||||| || || |||| || ||||| | |
Sbjct 932 CCAAGCATAAAGATCCCTGCGTTTGTCATGATGCCGATTGCGCATCTGGTTGAACTGA-C 990
Query 1049 ATATAAATTACTCGGACCGTATGGGATGAAAGTACCAGTGCTAACACCTTCTAGGGTTAG 1108
||||||| | | ||||| |||||||||||||||||| ||||||||||| || |||||
Sbjct 991 ATATAAACTGTTGGGACCATATGGGATGAAAGTACCACAACTAACACCTTCAAGAGTTAG 1050
Query 1109 GCTACTCTCTTGCAACAGAACATTT-GATTCTTCAAAAGCAAAGGATCGTTTAGGCTATT 1167
||| ||||| |||| ||||| ||| ||||| |||||||||||||||| ||||||||
Sbjct 1051 GCTTCTCTCGTGCAGTAGAAC-TTTCGATTCCACAAAAGCAAAGGATCGGCTAGGCTATG 1109
Query 1168 CTCCTGTTGTCCCACTTCAGGAAGGTATAAAGAGGACAATAGATTCATTCTCACACTTGA 1227
||||||| || |||||||||||||||||| |||||| ||||| |||||||| ||| | |
Sbjct 1110 CTCCTGTGGTGCCACTTCAGGAAGGTATACGGAGGACGATAGACTCATTCTCTCACCT-A 1168
Query 1228 A-AGCTCAAAATCAACCCAAAACAGA 1252
| |||| || |||| |||||| |||
Sbjct 1169 ACAGCTGGAAGTCAATCCAAAAGAGA 1194
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63991611600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5