BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47317.1
Length=312
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913730 jgi|Araly1|913730|Al_scaffold_0001_3984 412 5e-115
Ahg923020 jgi|Araly1|923020|scaffold_104301.1 248 2e-65
Ahg930178 jgi|Araly1|930178|scaffold_302635.1 230 6e-60
> Ahg913730 jgi|Araly1|913730|Al_scaffold_0001_3984
Length=312
Score = 412 bits (223), Expect = 5e-115
Identities = 284/313 (91%), Gaps = 6/313 (2%)
Strand=Plus/Plus
Query 1 ATGGCGACATTGAAAACAACAATCTTTATCATCTTCATTCTCTATATCTCATGTACAATG 60
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||
Sbjct 1 ATGGCGACATTGAAAACAACAATCTTCATCATCTTTGTTCTCTATATCTCATGTACATTG 60
Query 61 TTTGTAAATATCTTTAGAGTTCAAGCCGATGCATCATGCTTGACAACAAA-AGAGTGTGT 119
|||| ||||||||| |||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 61 TTTGCGAATATCTTTGGAGTTCAAGCCGATGCATCATGCTTGACAA-AAAGAGAGTGTGA 119
Query 120 G-GTGCGTTGTTCAGACGAAGATGCACAGTGTATTCATGG-CGAGTGCCATTGTCCGCAC 177
| | ||| ||||| || || || ||||||||||||| ||| | ||||||| |||||||||
Sbjct 120 GAG-GCGATGTTCCGATGACGAGGCACAGTGTATTCGTGGAC-AGTGCCAATGTCCGCAC 177
Query 178 CTAAAAGTCGACATTGAGCCGACCAAGGCGATACGGTGCAAGACTGATCTTGATTGTCCT 237
||||||||||| ||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 178 CTAAAAGTCGAGATTGAGCCGACCAAGGCGATACGATGCAAGACCGATCGTGATTGTCCT 237
Query 238 GATCCTCATCAATGCCCTAAATATGATTATTATGCATGCCTTAATAATGGAGAATGTACT 297
||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 238 GATTCTCATCAATGCCCTAAAGATTATTATTATGCATGCCTTAATAATGGAGAATGTACT 297
Query 298 TGTATCTCTGTTT 310
||||||||| |||
Sbjct 298 TGTATCTCTATTT 310
> Ahg923020 jgi|Araly1|923020|scaffold_104301.1
Length=354
Score = 248 bits (134), Expect = 2e-65
Identities = 258/316 (82%), Gaps = 15/316 (5%)
Strand=Plus/Plus
Query 1 ATGGCGACATTGAAAACAACAATCTTTATCATCTTCATTC-TCTATATCTCATGTACAAT 59
|||||| ||||||||||||||||||| ||||| ||| | ||||| |||||||||| |
Sbjct 23 ATGGCGGCATTGAAAACAACAATCTTCATCATTTTC-GGCTTCTATCTCTCATGTACGTT 81
Query 60 GTTTGTAAATATCTTTAGAGTTCAAGCCGATGCATCATGCTTGACAACA-AAAGAGTGTG 118
||| || ||||||| ||||||||||| | || |||| ||| | | |||||||||
Sbjct 82 GTTGGTGGGTATCTTTGGAGTTCAAGCC-A--AATTATGCAAGAC-AGATGAAGAGTGTG 137
Query 119 -TGGTGCGTTGTTC-AGACGAAGATGC-ACAGTGTATTCATGGCGA-GTGCCATTGTCCG 174
| ||| || || ||| | || ||| | ||||||||| ||| | ||||||||| ||
Sbjct 138 ACCG-GCGATG-TCAAGATGTAGGTGCGA-AGTGTATTCTTGG-AATATGCCATTGTTCG 193
Query 175 CACCTAAAAGTCGACATTGAGCCGACCAAGGCGATACGGTGCAAGACTGATCTTGATTGT 234
| ||||||||| || | ||||||||||||||||| | | |||||||||||| |||||||
Sbjct 194 CGCCTAAAAGTTGAGACTGAGCCGACCAAGGCGAGAAGATGCAAGACTGATAGTGATTGT 253
Query 235 CCTGATCCTCATCAATGCCCTAAATATGATTATTATGCATGCCTTAATAATGGAGAATGT 294
|||||| |||||||||||| |||| || |||||||||| |||||||||||||||||||||
Sbjct 254 CCTGATTCTCATCAATGCCTTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAATGT 313
Query 295 ACTTGTATCTCTGTTT 310
||||||||||||||||
Sbjct 314 ACTTGTATCTCTGTTT 329
> Ahg930178 jgi|Araly1|930178|scaffold_302635.1
Length=354
Score = 230 bits (124), Expect = 6e-60
Identities = 255/317 (80%), Gaps = 13/317 (4%)
Strand=Plus/Plus
Query 1 ATGGCGACATTGAAAACAACAATCTTTATCATCTTCATTC-TCTATATCTCATGTACAAT 59
|||||| || |||||||||||||| | ||||| ||| | ||||| ||||||||| |
Sbjct 23 ATGGCGGCACTGAAAACAACAATCCTCATCATTTTC-GGCTTCTATCTCTCATGTATGTT 81
Query 60 GTTTGTAAATATCTTTAGAGTTCAAGCCGATGCATCATGCT-TGACAACA-AAAGAGTGT 117
||| || ||||||| ||||||||| ||| |||||| | ||| | | ||||||||
Sbjct 82 GTTGGTGGGTATCTTTGGAGTTCAAGTCGA---ATCATG-TAGGAC-AGATGAAGAGTGT 136
Query 118 GTGG-TGCGT-TGTTCAGACGAAGATGCACAGTGTATTCATGGCGAGTGCCATTGTCCGC 175
|| ||| | |||||||| |||| ||| | ||||||| | | | |||| ||||| ||
Sbjct 137 -AGGTTGC-TATGTTCAGATGAAGGTGCGGAATGTATTCTTAGAGTGTGCAATTGTTCGA 194
Query 176 ACCTAAAAGTCGACATTGAGCCGACCAAGGCGATACGGTGCAAGACTGATCTTGATTGTC 235
| |||||||| || | ||| ||||||||||||| | | ||||||||||||| ||||||||
Sbjct 195 AACTAAAAGTTGAGACTGAACCGACCAAGGCGAAAAGATGCAAGACTGATCGTGATTGTC 254
Query 236 CTGATCCTCATCAATGCCCTAAATATGATTATTATGCATGCCTTAATAATGGAGAATGTA 295
||| | |||||| |||||||||| || |||||||||| ||||||||||||||||||||||
Sbjct 255 CTGTTTCTCATCCATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAATGTA 314
Query 296 CTTGTATCTCTGTTTAA 312
|||||||| ||||||||
Sbjct 315 CTTGTATCGCTGTTTAA 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10988809632
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5