BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47320.1
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923020 jgi|Araly1|923020|scaffold_104301.1 387 9e-107
Ahg930178 jgi|Araly1|930178|scaffold_302635.1 292 2e-78
Ahg913730 jgi|Araly1|913730|Al_scaffold_0001_3984 235 3e-61
> Ahg923020 jgi|Araly1|923020|scaffold_104301.1
Length=354
Score = 387 bits (209), Expect = 9e-107
Identities = 266/293 (91%), Gaps = 5/293 (2%)
Strand=Plus/Plus
Query 1 ATGACGGCATTGAGAAGAACAATCTCCATCATTTTCGTTTTCTATCTCTCATGTACGTTG 60
||| ||||||||| || |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 23 ATGGCGGCATTGAAAACAACAATCTTCATCATTTTCGGCTTCTATCTCTCATGTACGTTG 82
Query 61 TTCGTGAATATCTTTGGAGTTCAAGCCAGAAATTTATGCAAGACAGATGAAGATTGTGTG 120
|| ||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||
Sbjct 83 TTGGTGGGTATCTTTGGAGTTCAAGCC--AAA-TTATGCAAGACAGATGAAGAGTGTGAC 139
Query 121 TTGCGATGTCAAGATCCAGGTGCGAACTGTATTCTTGGAATATGCCATTGTTCGCGCC-A 179
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 140 CGGCGATGTCAAGATGTAGGTGCGAAGTGTATTCTTGGAATATGCCATTGTTCGCGCCTA 199
Query 180 ACAAGTTGAGACTGAGCTGACCAAGGTGATAAGATGCAAGACTGATCGTGATTGTCCTGA 239
| ||||||||||||||| |||||||| || |||||||||||||||| |||||||||||||
Sbjct 200 A-AAGTTGAGACTGAGCCGACCAAGGCGAGAAGATGCAAGACTGATAGTGATTGTCCTGA 258
Query 240 TTCTCATCAATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAAT 292
|||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 259 TTCTCATCAATGCCTTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAAT 311
> Ahg930178 jgi|Araly1|930178|scaffold_302635.1
Length=354
Score = 292 bits (158), Expect = 2e-78
Identities = 253/297 (85%), Gaps = 13/297 (4%)
Strand=Plus/Plus
Query 1 ATGACGGCATTGAGAAGAACAAT-CTCCATCATTTTCGTTTTCTATCTCTCATGTACGTT 59
||| ||||| ||| || |||||| || ||||||||||| |||||||||||||||| |||
Sbjct 23 ATGGCGGCACTGAAAACAACAATCCT-CATCATTTTCGGCTTCTATCTCTCATGTATGTT 81
Query 60 GTTCGTGAATATCTTTGGAGTTCAAGCCAGAAATTTATGCAAGACAGATGAAGATTGT-G 118
||| ||| ||||||||||||||||| | | || | ||| | |||||||||||| ||| |
Sbjct 82 GTTGGTGGGTATCTTTGGAGTTCAAGTC-G-AA-TCATGTAGGACAGATGAAGAGTGTAG 138
Query 119 TGTTGCGATG-TCAAGATCCAGGTGC-GAACTGTATTCTTGGAATATGCCATTGTTCG-C 175
||||| ||| || |||| |||||| ||| ||||||||| || | ||| ||||||||
Sbjct 139 -GTTGCTATGTTC-AGATGAAGGTGCGGAA-TGTATTCTTAGAGTGTGCAATTGTTCGAA 195
Query 176 GCCAACAAGTTGAGACTGAGCTGACCAAGGTGATAAGATGCAAGACTGATCGTGATTGTC 235
| || ||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct 196 ACTAA-AAGTTGAGACTGAACCGACCAAGGCGAAAAGATGCAAGACTGATCGTGATTGTC 254
Query 236 CTGATTCTCATCAATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAAT 292
||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 255 CTGTTTCTCATCCATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGAAT 311
> Ahg913730 jgi|Araly1|913730|Al_scaffold_0001_3984
Length=312
Score = 235 bits (127), Expect = 3e-61
Identities = 247/302 (82%), Gaps = 20/302 (7%)
Strand=Plus/Plus
Query 1 ATGACGGCATTGAGAAGAACAATCTCCATCAT-TTTCGTTTTCTATCTCTCATGTACGTT 59
||| || |||||| || |||||||| |||||| ||| ||| ||||| |||||||||| ||
Sbjct 1 ATGGCGACATTGAAAACAACAATCTTCATCATCTTT-GTTCTCTATATCTCATGTACATT 59
Query 60 GTTCGTGAATATCTTTGGAGTTCAAGCCAGA--AATTTATGCAAGAC-AGATGAAGATTG 116
||| | |||||||||||||||||||||| || | | |||| ||| | | | ||| ||
Sbjct 60 GTTTGCGAATATCTTTGGAGTTCAAGCC-GATGCA-TCATGCTTGACAAAAAG-AGAGTG 116
Query 117 TGTGTTGCGATG-T-C-AAGATCCAGGTGCGA-ACTGTATTCTTGGAATA-TGCCATTGT 171
|| | |||||| | | | || | | | || | | ||||||| ||| | | ||||| |||
Sbjct 117 TGAGAGGCGATGTTCCGATGA-CGA-G-GC-ACAGTGTATTCGTGG-ACAGTGCCAATGT 171
Query 172 TCGCGCC-AACAAGTTGAGACTGAGCTGACCAAGGTGATAAGATGCAAGACTGATCGTGA 230
||| || || |||| |||| ||||| |||||||| |||| |||||||||| ||||||||
Sbjct 172 CCGCACCTAA-AAGTCGAGATTGAGCCGACCAAGGCGATACGATGCAAGACCGATCGTGA 230
Query 231 TTGTCCTGATTCTCATCAATGCCCTAAAGATTATTATTATGCTTGCCTTAATAATGGAGA 290
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 231 TTGTCCTGATTCTCATCAATGCCCTAAAGATTATTATTATGCATGCCTTAATAATGGAGA 290
Query 291 AT 292
||
Sbjct 291 AT 292
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28782802335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5