BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47330.1
Length=1819
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473883 jgi|Araly1|473883|fgenesh2_kg.1__3837__AT1G47330.1 2798 0.0
Ahg491310 jgi|Araly1|491310|fgenesh2_kg.7__743__AT4G33700.1 128 1e-28
> Ahg473883 jgi|Araly1|473883|fgenesh2_kg.1__3837__AT1G47330.1
Length=1800
Score = 2798 bits (1515), Expect = 0.0
Identities = 1727/1824 (95%), Gaps = 36/1824 (2%)
Strand=Plus/Plus
Query 3 AACATCAAAGAGTCACTC-TAAACTCATCTCTCTCGCCGAATTCTCCCCAACAATTTCCG 61
||| |||||||||||||| |||| ||||||||||||||||||||| ||| |||
Sbjct 1 AACCTCAAAGAGTCACTCTTAAA-TCATCTCTCTCGCCGAATTCT-CCC--CAA------ 50
Query 62 CCGGAAACAAATTCTCAGATTCCGGTAACTCTAAAACTATGTCATCGGATATTCCGTGCT 121
| || |||||||||||||||||||||||| |||||||| | |||||||||||||| |
Sbjct 51 -C---AA-AAATTCTCAGATTCCGGTAACTCT-AAACTATGGCGTCGGATATTCCGTGTT 104
Query 122 GCGGAACCACGTTCTCGCTCTACGTCGTGATAATCATAGCTCTTGTAGCGTTCGCTGGCT 181
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 105 GCGGAACCACGTTCTCGCTCTACGTCGTGATAACCATAGCTCTTGTAGCGTTCGCTGGTT 164
Query 182 TGATGGCTGGTTTAACTCTTGGTCTCATGTCTCTCGGTTTAGTCGACCTCGAAGTTCTCA 241
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 165 TGATGGCTGGTTTAACGCTTGGTCTCATGTCTCTTGGATTAGTCGACCTCGAAGTTCTCA 224
Query 242 TCAAATCTGGCCGTCCTCAAGATCGAATCAACGCCGGTAAGATATTTCCAGTAGTGAAGA 301
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 225 TCAAATCTGGTCGTCCTCAAGATCGAATCAACGCCGGTAAGATATTTCCAGTGGTGAAGA 284
Query 302 ATCAGCATCTGTTGCTATGTACACTTTTGATCGGAAACTCTATGGCTATGGAGGCTTTAC 361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 285 ATCAGCATCTGTTGCTTTGTACACTTTTGATCGGAAACTCTATGGCTATGGAGGCTTTAC 344
Query 362 CAATATTTTTGGATAAAATTGTGCCTCCTTGGTTAGCTATTCTTCTTTCAGTGACTCTTA 421
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 345 CAATATTTTTGGATAAAATTGTGCCTCCATGGTTAGCTATTCTTCTTTCAGTGACTCTTA 404
Query 422 TACTGGTGTTTGGAGAGATAATGCCACAAGCAGTTTGTACTCGATACGGGCTTAAGGTTG 481
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 405 TACTGGTGTTTGGAGAGATAATGCCACAAGCAGTTTGTACTCGATACGGGCTCAAGGTTG 464
Query 482 GAGCGATAATGGCTCCTTTTGTTCGTGTTCTTCTTGTACTGTTCTTCCCAATTTCATATC 541
||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 465 GAGCGATAATGGCTCCTTTTGTTCGTGTTCTTCTTATATTGTTCTTCCCTATTTCATATC 524
Query 542 CAATCAGTAAGGTTCTTGATTGGATGTTGGGTAAGGGACATGGAGTTCTTTTACGGAGAG 601
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 525 CAATCAGCAAGGTTCTTGATTGGATGTTGGGTAAGGGACATGGTGTTCTTTTACGGAGAG 584
Query 602 CAGAGCTAAAGACATTTGTGAATTTCCATGGAAATGAGGCTGGGAAAGGTGGAGATCTAA 661
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 585 CAGAGCTGAAGACATTTGTGAACTTCCATGGAAATGAGGCTGGGAAAGGTGGAGATCTAA 644
Query 662 CAACCGATGAGACTTCAATCATCACAGGTGCACTTGAATTAACTGAAAAGACGGCAAAAG 721
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 645 CAACCGATGAGACTTCTATCATCACAGGTGCACTTGAATTAACTGAAAAGACAGCAAAAG 704
Query 722 ATGCAATGACTCCCATATCGAATGCATTTTCCCTTGAGCTTGATACACCTCTTAATTTGG 781
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 705 ATGCAATGACTCCCATATCGAATGCATTTTCCCTTGAGCTTGATACAACTCTTAATTTGG 764
Query 782 AAACTTTAAATACAATTATGTCAGTTGGTCATAGCAGAGTTCCAGTTTATTTCAGAAATC 841
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 765 AAACTTTGAATACAATAATGTCAGTTGGTCATAGCAGAGTTCCTGTTTATTTCAGAAATC 824
Query 842 CCACACATATAATTGGGCTCATTCTGGTTAAAAATCTATTGGCAGTTGATGCCAGAAAGG 901
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 825 CGACACATATAATTGGGCTCATTCTGGTTAAAAATCTTTTGGCAGTTGATGCCAGAAAGG 884
Query 902 AAGTTCCTCTGAGAAAAATGTCCATGAGAAAAATTCCACGTGTCTCTGAGACCATGCCAC 961
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 885 AAGTTCCTCTGAGAAAAATGTCCATGAGAAAAATTCCGCGTGTCTCTGAGACAATGCCAC 944
Query 962 TATATGATATCTTAAACGAGTTCCAGAAGGGTCACAGTCACATAGCAGTTGTTTACAAGG 1021
|||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 TATACGATATCCTAAATGAGTTCCAGAAGGGTCACAGTCACATAGCAGTTGTTTACAAGG 1004
Query 1022 ATCTTGACGAGCAGGAGCAATCTCCCGAAACAAGTGAAAATGGTATTGAGCGCAGAAAAA 1081
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
Sbjct 1005 ATCTTGACGAGCAGGAGCAATCTCTCGAAACAAGTGAAAATGGTATTGAACGCAGAAAGA 1064
Query 1082 ACAAGAAAACGAAAGACGAACTTTTTAAGGACAGTTGTAGGAAACCAAAAGCTCAGTTTG 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 ACAAGAAAACGAAAGACGAACTTTTTAAGGACAGTTGTAGGAAACCAAAAGCTCAGTTTG 1124
Query 1142 AGGTATCGGAGAAGGAAGTATTCAAAATTGAAACCGGAGATGCAAAATCCGGCAAGAGTG 1201
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 AGGTATCAGAGAAGGAAGTATTCAAAATTGAAACCGGAGATGCAAAATCCGGCAAGAGTG 1184
Query 1202 AGAACGGTGAGGAGCAGCAAGGGTCAGGGAAAACAAGTCTATTGGCTGCTCCAGCTAAGA 1261
|||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 1185 AGAACGGTGAGGAGCAGC-A--G---GGGAAAACAAGTCTATTGGCTGCTCCAGCTAAGA 1238
Query 1262 AGCGACATAGAGGCTGTTCGTTCTGCATTTTGGACATTGAGAATACTCCCATACCTGATT 1321
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1239 AGCGACATAGAGGCTGTTCGTTCTGCATTTTGGATATTGAGAATACTCCCATACCTGATT 1298
Query 1322 TTCCTACCAATGAGGAGGTTGTAGGAGTTATCACCATGGAGGATGTTATCGAAGAGCTTC 1381
| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1299 TCCCCACCAATGAAGAAGTTGTAGGAGTTATCACCATGGAGGATGTTATCGAAGAGCTTC 1358
Query 1382 TTCAGGAAGAGATCCTTGACGAAACCGATGAGTATGTGAACATCCACAACAGGATAAGAG 1441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 TTCAGGAAGAGATCCTTGACGAAACCGATGAGTATGTGAACATCCACAACAGGATAAGAG 1418
Query 1442 TCAACATGCATGCTTCTCCAG-AGAATCTACCAAGCGTGATAACCTCAATCACGCAATCA 1500
|||||||||||||||||| || |||||||||||||| | |||||||| ||||||||||||
Sbjct 1419 TCAACATGCATGCTTCTC-AGGAGAATCTACCAAGCATAATAACCTCGATCACGCAATCA 1477
Query 1501 TCATCGGGTTCCACTAGTCCCAACCAAACATCTCATATGGCCACACCAGATTCAAGTCCT 1560
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1478 TCATCGGGTTCCACTAGTCCCAACCAAACATCTCATATGGCCACACCAGATTCAAGTCCT 1537
Query 1561 ACAACAAAACCATCAAATTCAAGTCCTACAAGAAAACCTTCAGTATCGAGTCCTACGAGA 1620
|||||||| ||||||| |||||| || |||||||||||||||||||| ||||||||||||
Sbjct 1538 ACAACAAAGCCATCAAGTTCAAGCCCCACAAGAAAACCTTCAGTATCAAGTCCTACGAGA 1597
Query 1621 GAGCCTTCAGATTCTTCACACTCCATGGCTCCAAAACATGAAGAGTCCACCCAAACTTTA 1680
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1598 AAGCCTTCAGATTCTTCCCACTCCATGGCACCAAAACATGAAGAGTCCACCCAAACTTTA 1657
Query 1681 TGATG-ATCATATATGAGTGAAGA---TAGATTAGCTATGTATCCTTAAAAGATGACTTC 1736
|||| |||||||||||||||||| ||||| || ||| ||| ||||||||||||||||
Sbjct 1658 TGATATATCATATATGAGTGAAGAAGATAGAT-AGTTATATATTCTTAAAAGATGACTTC 1716
Query 1737 TTTAACAGAATCGTTTGTGT--GTTTGAGATTAAGACTGGTTAATAGTTTCTTTGTAA-T 1793
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 1717 TTCAACAGAATCGTTTGTCTATGTTTGAGATTAAGACTGGTTAATAGTTTCTTTGTACGT 1776
Query 1794 ---GAAAAGGATGGATCTTTTACC 1814
|||||||||||||||||||||
Sbjct 1777 AAAGAAAAGGATGGATCTTTTACC 1800
> Ahg491310 jgi|Araly1|491310|fgenesh2_kg.7__743__AT4G33700.1
Length=1668
Score = 128 bits (69), Expect = 1e-28
Identities = 433/600 (72%), Gaps = 60/600 (10%)
Strand=Plus/Plus
Query 171 GTTCGCTGG-CTTGATGGCTGGTTTAACTCTT-GGTCTCATGTCTCTCG-GTTTAGTCGA 227
||||||||| ||| ||| |||||||||| || ||||| |||||||| | || | || ||
Sbjct 324 GTTCGCTGGACTT-ATGTCTGGTTTAAC-ATTGGGTCTTATGTCTCT-GAGTCTCGTTGA 380
Query 228 CCTCGAAGTTCTCATC-AAATCTGGCCGT-C-CTC-AAGATCG--AATCAACGCCGGTAA 281
|| ||||||||| | ||||| || || | | | || |||| ||| | || | ||
Sbjct 381 TCTTGAAGTTCTC-GCTAAATC-GG--GTACACCCGAACATCGTAAAT--ATGCTGCAAA 434
Query 282 GATATTTCCAGTAGTGAAGAATCAGCATCTGTTGCTATGTACACTTT--TGATCGGAAAC 339
|||||| ||||| ||||||||||||||||||||||| ||| |||||| | || | |||
Sbjct 435 GATATTGCCAGTGGTGAAGAATCAGCATCTGTTGCT-TGT-CACTTTACTTATATGCAAC 492
Query 340 TCTATG--GCTATGGAGGCTTTACCAATATTTT-TGGATAAAATTGTG-CCTCCTTGGTT 395
| | | ||||||||| | | || || |||| | ||| ||||| | | | || |
Sbjct 493 GC-A-GCTGCTATGGAGACGCTCCCTAT-TTTTCTTGATGGCCTTGTGACGGCATGGGGT 549
Query 396 AGCTATTCTT-CTTTCAGTGACTCTT-ATACTGGTGTTTGGAGAGATAATGCCACAAG-C 452
|| ||| || ||||||| || || || || | ||||| ||||| || || | || |
Sbjct 550 -GCCATT-TTGATTTCAGTTAC-ATTGATTCTTCTCTTTGGTGAGATTATACCGC-AGTC 605
Query 453 AGTTTG-TACTCGATACGGGCTTAAG-G-TTGGAGCGATAATGGCTCCTTTTGTTCGTGT 509
| |||| | | || || || || | | |||| || | | ||||||| |||||||||||
Sbjct 606 AATTTGCT-CACGCTA-TGG-TTTGGCGATTGGTGCAACAGTGGCTCCGTTTGTTCGTGT 662
Query 510 TCT--TCTTGTACTGTTCTTCCCAATTTCATATCCAATCAGTAAGGTTCTTGA-TTGGAT 566
|| |||| || | | ||| || || ||| ||||| || ||| | || || || |
Sbjct 663 CCTAGTCTT-TA-TCTGCTTACCTGTTGCATGGCCAATTAGCAAGCTGCTGGACTT-TCT 719
Query 567 GTTGGGTAAGGGAC-ATGGAGTTCTTTTACGGAGAGCAGAGCT-AAAGACATTTGTGAAT 624
|||||| | | | | | || ||||| || ||||| ||||| ||| ||| ||||| ||
Sbjct 720 ATTGGGTCATCGCCGA-GCAGCACTTTTTCGAAGAGCTGAGCTGAAA-ACACTTGTGGAT 777
Query 625 TTCCATGGAAATGAGGCTGGGAAAGGTGGAGA-TCTAACA-ACCGATGAGACTTCAATCA 682
|| ||||||||||||||||||||||||||||| | | || | ||||| || ||||||
Sbjct 778 TTTCATGGAAATGAGGCTGGGAAAGGTGGAGAGT-TGACTCAT-GATGAAACGACAATCA 835
Query 683 TCACAGGTGCACTTGAATTAACTGA-AAAGACGG-CAAAAGATGCAATGACTCCCATATC 740
|| |||| || || ||| | |||| ||| | || ||| ||||||||||| || |||||
Sbjct 836 TCGCAGGAGCTCTCGAACTGTCTGAGAAA-ATGGTCAAG-GATGCAATGACACCAATATC 893
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68295809285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5