BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47340.1
Length=1695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1 1949 0.0
Ahg923024 jgi|Araly1|923024|scaffold_104305.1 819 0.0
> Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1
Length=1705
Score = 1949 bits (1055), Expect = 0.0
Identities = 1292/1406 (92%), Gaps = 18/1406 (1%)
Strand=Plus/Plus
Query 5 AATGCtaaaaaaaactctgataaaaaaaataaataatgctaaagaaaactgct-ccaaac 63
|||| |||||| ||||||||| ||||| |||||||| |||| |||||| || ||||
Sbjct 1 AATGTTAAAAACAACTCTGAT---AAAAA-AAATAATGTTAAAAAAAACT-CTGATAAAC 55
Query 64 tctccaaaaCGTCGCCGTTGTTCATCCTTCGCCGCCGTTGATCTCGTCGGATCAGCAAAC 123
||||||||||||||||| || |||||| || ||||||||| | |||| | | | ||
Sbjct 56 TCTCCAAAACGTCGCCGCTGCTCATCCGTCTCCGCCGTTGGTAACGTC-G--C-G--AAT 109
Query 124 AGAACGTTCATGGTTTCAGTTTCCCTCCCGAAAGAACTCATCCTCGAGATTTTG-AAGAG 182
||| || |||||||||| |||||||||||||||||||||||||||||||| ||| | ||
Sbjct 110 AGATCGATCATGGTTTCTGTTTCCCTCCCGAAAGAACTCATCCTCGAGATATTGTCA-AG 168
Query 183 ATTGCCTGCAAAGTCAGTTAAGAGGTTTCATTGTGTGTCGAAGCAATGGGCATCAATGCT 242
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 169 ATTGCCTGCAAAGTCAGTTAAAAGGTTTCATTGTGTGTCGAAGCAATGGTCATCAATGCT 228
Query 243 TAGTTGTCCACATTTCAGAGAGTTGTTCCTGACCAGGTCCTCATCTGCTCAGCCGCGTCT 302
|||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 229 TAGTCGTCCACATTTCACAGAGTTGTTCCTGACCAGGTCCTCCTCTGCTCAGCCGCGTCT 288
Query 303 CTTATTCGCCATCGAAAAACATAATCAGTGGAGCTTGTTCTCGTTGCCTCAGCGTCTGAC 362
|||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||
Sbjct 289 CTTATTCGCCATCGAAAAACGGAATCAGTGGAGCTTCTTCTCGTTGCCTCAGCATCTGAC 348
Query 363 TCCATATGAGAAGTCTTCTTCGTCGTCTGTTGTAGTAACCCCTGAATTTCACATGAAGTT 422
|||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||
Sbjct 349 TCCATATGAGAAGTCTTCGTCGTTGTCTCTTGTAGTAACCCCTGAATTTCACATGAAGTT 408
Query 423 CCCTCCAGATGGTATGCTGATCTATCCTCGTCATGACCGACGGTTTTCATTTGGCTATGC 482
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 409 CCCTCCAGATGGTATGCAGATCTATCCTCGTCATGACCGACGGTTTTCATGTGGCTATGC 468
Query 483 CTCTGGTTTGATGTATTTCTATGGTATGTGGATCAACGAGCA-CGATTACGATGGAGTGC 541
|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 469 CTCTGGTTTGATGTATTTCTATGGTATGTGGATCAACGAG-AGGGCTTACGATGGAGTGC 527
Query 542 CTGTGATATGCAACCCTTTAACAGGACGGTATGCGAGCTTGCCTTTTCTGGAAAGGTATA 601
|||||||||| |||||| || ||||||||||||||| ||| || |||||||||||||| |
Sbjct 528 CTGTGATATGTAACCCTATATCAGGACGGTATGCGACCTTACCGTTTCTGGAAAGGTACA 587
Query 602 GAAAGGCGTTTAGCTTTTTCGGGTTTGATCCGATTGAGAAGCAGTACAAGGTGTTGTTCA 661
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 588 GAAAGGCGTTTAGCTTTTTCGGGTTTGATCCGATTGACAAGCAGTACAAGGTGTTGTTCA 647
Query 662 TGGCTTACCCTTCTGGTCCTGATCATCATACAGTTCTAACATTTGGAACTGGAGAAATGA 721
|||||||||| ||||||||||||| ||||| |||||| ||||||||| |||| |||||||
Sbjct 648 TGGCTTACCCATCTGGTCCTGATCCTCATAGAGTTCTGACATTTGGAGCTGGTGAAATGA 707
Query 722 GTTGGAGAAAGATAGAATGTTCTGTAAAACATGACATTGTGAGTGATGGGATATGTATCA 781
|||||||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||
Sbjct 708 GTTGGAGAAAGATAGAATGTTCAGTAAGACATGACATTGCGAGTGATGGGATATGCATCG 767
Query 782 ATGGGGTCATGTATTACTTAGGCGATACGTCTGAGTTTATGACTGCTTTTGTGGTTGTTT 841
|||| || ||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 768 ATGGAGTTGTGTATTACTTAGGTGATACGTCTGAGTTTATGACTGCTTTTGTGGTAGTTT 827
Query 842 GCTTTGATGTGAGGTCTGAGACATTCAGCTTTATTTACCCTGGAAGCTATTGTGAAGTGA 901
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 828 GCTTTGATGTAAGGTCTGAGACATTCAGCTTTATTTACCCAGGAAGCTATTGTGAAGTGA 887
Query 902 TAAACTACAAGGGAAAGTTGGGTTTGGTTTTTTGTGATGATTACACTGATGATGCTATTG 961
|||||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||
Sbjct 888 TAAACTACAAGGGAAAGTTGGGATTGGTTTTTTATGATGATTACGCTGATGATGCCATTG 947
Query 962 AGTTGCGTCTGTGGGTTCTAGAGGACAAGGAGAAAATAGAGTGGTCAAAGTATGCCTACA 1021
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 948 AGTTGCGTATGTGGGTTCTAGAGGACAAGGAGAAAATGGAGTGGTCAAAGTATGCCTACA 1007
Query 1022 AGTTGAAGGATGAGAAATTCTCGGCTCATTACGTTTCCATTGTTGGAGTGAGTGCTGCGG 1081
|||||| |||||| ||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1008 AGTTGAGGGATGATAAATTCTTGGCTAATTACGTTTCCATTGTTGGAGTGAGTGCTGCGG 1067
Query 1082 GTGAGATTGTTCTGTCAATGGCTGATTTCACGTCTAAACAACCGTTTTATGTGTTCTACT 1141
||||||||||||||||||||||||||| |||||| | ||||||||||||| | |||||||
Sbjct 1068 GTGAGATTGTTCTGTCAATGGCTGATTACACGTCGAGACAACCGTTTTATCTATTCTACT 1127
Query 1142 ACAATCCCGAAAGGAACACACTCCAATGTACTGAAATTCAAGGCTTTGAAGAACACCATG 1201
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 1128 TCAATCCCGAAAGGAACACACTCCAATGTGTTGAAATTCAAGGCTTTGAAGAATACCATG 1187
Query 1202 GAACATTCGACAGGCGTAGCAGAGTCCGCGTCTTTGTAGATGATTGCAGTAGTTTCTACC 1261
|| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1188 GAGTGTTCGACAAGCTTAGCAGAGTCCGCGTCTTTGTAGATGATTGCAGTAGTTTCTACC 1247
Query 1262 GTTTTGCTGACCATGTTGAGTATCTGAATGTTGACGAACCAAAGCTGCTGAAGTCCAAAA 1321
||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||
Sbjct 1248 GTTTTGCAGACCATGTTGAGTATCTAAATGTTGACGAGCCAAAGCTGCTGAAGTCAAAAA 1307
Query 1322 TCTATGATGGTCCAAATGCgaagatagaatgg-gaagaggaagaagaagaagatgaagat 1380
||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||||
Sbjct 1308 TCTATGATGGTCCAAATGCGAAGGTAGAA-GAAGAAGAGGAAGAAGAAGAAGAAGAAGAA 1366
Query 1381 gaagatcaagaaaaagaagaagaaga 1406
||||| ||||| |||||||||||||
Sbjct 1367 GAAGAAGAAGAAGAAGAAGAAGAAGA 1392
Score = 198 bits (107), Expect = 1e-49
Identities = 166/192 (86%), Gaps = 13/192 (7%)
Strand=Plus/Plus
Query 1341 gaagatagaatg-ggaagaggaagaagaagaagatgaagatgaagatcaagaaaaagaag 1399
|||||| ||| | ||||| |||||||||||||||||||||| |||| ||| ||||||
Sbjct 1415 GAAGAT-GAA-GATGAAGATGAAGAAGAAGAAGATGAAGATGGAGAT---GAAGAAGAAG 1469
Query 1400 aagaagatCAATGGAGTTAGGGTAAAAGCAATGGTCATGTCTTTTGGTGCTTATCTATGA 1459
|| || |||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1470 AATAA-ATCAATTGAGTTAGGGTAAAAGCAATGGGCATGTCTTTTGGTGCTTATCTATGA 1528
Query 1460 GGTTACGTTCTTTAGTTGTG-AA---GTGAAGTTTA-G-CTGGTAAATTCTGTCTCTCAT 1513
|||||||||||||||||||| || | ||||||| | ||||||||| | |||||| |
Sbjct 1529 GGTTACGTTCTTTAGTTGTGTAATAAGCGAAGTTTTTGTCTGGTAAATCCCATCTCTCTT 1588
Query 1514 AAGTACTAAATC 1525
||||||||||||
Sbjct 1589 AAGTACTAAATC 1600
> Ahg923024 jgi|Araly1|923024|scaffold_104305.1
Length=970
Score = 819 bits (443), Expect = 0.0
Identities = 768/924 (83%), Gaps = 26/924 (3%)
Strand=Plus/Plus
Query 416 TGAAGTTCCCTCCAGATGGTATGCTGATCTATCCTCGTCATGACCGACGGTTTTCATTTG 475
|||||||||||||| | |||| ||| |||||| || |||||||||| ||||||| ||
Sbjct 1 TGAAGTTCCCTCCAAACAATATGAGGATTTATCCTGGTAATGACCGACGATTTTCATGTG 60
Query 476 GCTATGCCTCTGGTTTGATGTATTTCTATGGTATGTGGATCAA-CGAGCA-CGATTACGA 533
||||||| ||||||||||||||||||||||||||||||||||| | || | | |||||||
Sbjct 61 GCTATGCTTCTGGTTTGATGTATTTCTATGGTATGTGGATCAAACAAG-AGC-ATTACGA 118
Query 534 TGGAGTGCCTGTGATATGCAACCCTTTAACAGGACGGTATGCGAGCTTGCCTTTTCTGGA 593
|||||| |||||| |||| |||||| |||| ||||||||||||||||| |||| |||| |
Sbjct 119 TGGAGTTCCTGTGCTATGTAACCCTATAACGGGACGGTATGCGAGCTTACCTTATCTGTA 178
Query 594 AAGGTATAGAAAGGCGTTTAGCTTTTTCGGG-TTTGATCCGATTGAGAAGCAGTACAAGG 652
||||| |||| ||||| ||||||||| ||| |||||||| ||||| ||||| |||||||
Sbjct 179 TAGGTACAGAAGGGCGTATAGCTTTTT-GGGATTTGATCCTATTGACAAGCAATACAAGG 237
Query 653 TGTTGTTCATGGCTTACCCTTCTGGTCCTGATCATCATACAGTTCTAACATTTGGAACTG 712
| |||| |||||||||||| | | ||||| |||| |||| | || | ||||| |||||||
Sbjct 238 TATTGTGCATGGCTTACCCATGTTGTCCTAATCACCATAAAATTATGACATTAGGAACTG 297
Query 713 GAGAAATGAGTTGGAGAAAGATAGAATGTTC-TGTAAAACATGACATTGTGAGTGATGGG 771
|||||||||||||||||| |||| ||||||| | ||| |||||| | ||||||||| |||
Sbjct 298 GAGAAATGAGTTGGAGAAGGATAAAATGTTCCT-TAAGACATGAGAATGTGAGTGAAGGG 356
Query 772 ATATGTATCAATGGGGTCATGTATTACTTAGGCGATACGTCTGAGTT-TATGACTGCTTT 830
||||| ||| ||||||| ||||||||||||| || ||||||||| | ||| | ||
Sbjct 357 ATATGCATCGATGGGGTTTTGTATTACTTAGGTGACACGTCTGAGAGGT-TGAATAAATT 415
Query 831 TGTGGTTGTTTGCTTTGATGTGAGGTCTGAGACATTCA-GCTTTATTTACCCTGGAA-GC 888
|||| | |||||||||||||| | |||||||| ||||| | |||||||| || |||| ||
Sbjct 416 TGTGATAGTTTGCTTTGATGTTATGTCTGAGAAATTCAAG-TTTATTTATCC-GGAAAGC 473
Query 889 TATTGTGAAGTGATAAACTACAAGGGAAAGTTGGGTTTGGTTTTTTGTGATGATTAC-AC 947
| ||||||| ||||||||||||||||||| || ||| || ||| || ||||||||| |
Sbjct 474 TTTTGTGAATTGATAAACTACAAGGGAAAATTAGGTGTGATTTATTATGATGATTATGA- 532
Query 948 TGATGATGCTATTGAGTTGCGTCTGTGGGTTCTAGAGGACAAGGAGAAAATAG-AGTGGT 1006
|||||| ||||||||||||||| |||||||||||||||| ||||||| || | ||||
Sbjct 533 TGATGACGCTATTGAGTTGCGTTTGTGGGTTCTAGAGGATGCGGAGAAAC-AGGAATGGT 591
Query 1007 CA-AAGTATGCCTACAAGTTGAAGGATGAGAAATTCTCGGCTCATTACGTTTCCATTGTT 1065
|| |||||||||| |||| |||||| ||||||| | ||||||||||||| | ||
Sbjct 592 TGGAA-TATGCCTACACTTTGAGGGATGATAAATTCTTAGATCATTACGTTTCCGTCGTG 650
Query 1066 GGAGTGAGTGCTGCGGGTGAGATTGTTCTGTCAATGGCTGATTTCACGTCTAAACAACCG 1125
||||||| |||| ||||||| |||||| |||| |||| ||||| || | |||||||||
Sbjct 651 GGAGTGACTGCTTCGGGTGAAATTGTTTTGTCGATGGGAGATTTTACATTTAAACAACCC 710
Query 1126 TTTTATGTGTTCTACTACAATCCCGAAAGGAACACACTCCAATGTACTGAAATTCAAGGC 1185
|||||||| ||||||| ||||||||||| |||||| |||||| || |||||| |||||
Sbjct 711 TTTTATGTTTTCTACTTCAATCCCGAAAAGAACACTCTCCAACGTGTTGAAATCCAAGGT 770
Query 1186 TTTGAAGAACACCATGGAA-CATTCGACAGGCGTAGCAGAGTCCGCGTCTTTGTAGATGA 1244
|||| |||| |||||| || | || ||| | ||| ||||||| | |||||||||||||
Sbjct 771 TTTGGAGAATACCATG-AAGCGGTCAACAATCCTAGTAGAGTCCACTTCTTTGTAGATGA 829
Query 1245 TTGC-AGTAGTTTCTACCGTTTTGCTGACCATGTTGAGTATCTGAATGTTGACGAACCAA 1303
| || |||||||||||||| ||||| ||||||||||||||||| |||||| |||| ||||
Sbjct 830 T-GCTAGTAGTTTCTACCGCTTTGCAGACCATGTTGAGTATCTCAATGTTAACGATCCAA 888
Query 1304 AGCTGCTGAAGTCCAAA-ATCTAT 1326
|||| || ||||| ||| ||||||
Sbjct 889 AGCTACTTAAGTC-AAACATCTAT 911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63572618905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5