BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47350.1
Length=1587
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1 843 0.0
Ahg923024 jgi|Araly1|923024|scaffold_104305.1 723 0.0
Ahg359033 jgi|Araly1|359033|fgenesh1_pg.C_scaffold_9000073 222 5e-57
Ahg922179 jgi|Araly1|922179|scaffold_103460.1 137 2e-31
Ahg336227 jgi|Araly1|336227|fgenesh1_pg.C_scaffold_1002792 76.8 4e-13
Ahg473482 jgi|Araly1|473482|fgenesh2_kg.1__3436__AT1G33020.1 67.6 3e-10
> Ahg473884 jgi|Araly1|473884|fgenesh2_kg.1__3838__AT1G47340.1
Length=1705
Score = 843 bits (456), Expect = 0.0
Identities = 744/879 (85%), Gaps = 35/879 (4%)
Strand=Plus/Plus
Query 447 CGTTCGTCTC-T-TAGAAACCGCTGAATTTCATATGAAGTTCCCTCCAGATGGTATGCAG 504
|||| ||||| | ||| |||| |||||||||| |||||||||||||||||||||||||||
Sbjct 369 CGTT-GTCTCTTGTAGTAACCCCTGAATTTCACATGAAGTTCCCTCCAGATGGTATGCAG 427
Query 505 ATCTATCCTCGTAACGACCGACGGTTTTCATGTGGCTATGCGTCTGGTATGATGTATTTC 564
|||||||||||| | |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 428 ATCTATCCTCGTCATGACCGACGGTTTTCATGTGGCTATGCCTCTGGTTTGATGTATTTC 487
Query 565 TATGGTATGCGGATCAAAGAGGATGA-TTACGATGGAGTGCCTGTGCTATGTAACCCTAT 623
||||||||| ||||||| ||| | | ||||||||||||||||||| |||||||||||||
Sbjct 488 TATGGTATGTGGATCAACGAG-AGGGCTTACGATGGAGTGCCTGTGATATGTAACCCTAT 546
Query 624 AACGGGACATTATGCGACCTTGCCTGCTAT-TGCAA-GGTTTAGACAAG-CGTTTAGCTT 680
| | |||| ||||||||||| || | | | || || ||| ||| ||| ||||||||||
Sbjct 547 ATCAGGACGGTATGCGACCTTACC-GTT-TCTGGAAAGGTACAGA-AAGGCGTTTAGCTT 603
Query 681 TTTCGGGTATGATCCGATTGACAAGCAATTCAAGGTATTGTTCATGATCATGGCTTACCC 740
|||||||| |||||||||||||||||| | |||||| ||||||||| | |||||||
Sbjct 604 TTTCGGGTTTGATCCGATTGACAAGCAGTACAAGGTGTTGTTCATG-----G-CTTACCC 657
Query 741 ATGTAGTCCTGATCATCATAAAGTTCTGAAACTTGGAAG-TGGAGAAATGAGTTGGAGAA 799
|| | ||||||||| ||||| |||||||| | ||||| | ||| ||||||||||||||||
Sbjct 658 ATCTGGTCCTGATCCTCATAGAGTTCTGACATTTGGA-GCTGGTGAAATGAGTTGGAGAA 716
Query 800 -GATTAAAACGTACCTTAAGACATGAAATTATGAGTGAAGGTATATGCATCAATGGGGTT 858
||| | || || | |||||||||| ||| |||||| || ||||||||| |||| |||
Sbjct 717 AGAT-AGAATGTTCAGTAAGACATGACATTGCGAGTGATGGGATATGCATCGATGGAGTT 775
Query 859 GTGTATTACTTGGGTGATACGTCTGAGGTTT-TGACTTCTTTTGTGGTAGTTTGCTTTGA 917
||||||||||| ||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 776 GTGTATTACTTAGGTGATACGTCTGAG-TTTATGACTGCTTTTGTGGTAGTTTGCTTTGA 834
Query 918 TGTGAGGTATGAGACATTCAGCTTTCTTTACCCTGGAAGCTATTGTGAACTGATAAATTA 977
||| |||| |||||||||||||||| ||||||| ||||||||||||||| ||||||| ||
Sbjct 835 TGTAAGGTCTGAGACATTCAGCTTTATTTACCCAGGAAGCTATTGTGAAGTGATAAACTA 894
Query 978 CAAAGGAAAGTTGGGTTTGGTTTTTTATGATGATTACGATGGTGATACCATTAAGTTGCG 1037
||| ||||||||||| |||||||||||||||||||||| || |||| ||||| |||||||
Sbjct 895 CAAGGGAAAGTTGGGATTGGTTTTTTATGATGATTACGCTGATGATGCCATTGAGTTGCG 954
Query 1038 TCTTTGGGTTCTAGAGGACGAGGAGAAAAATGAA-TGGTCGAAA-TATGCCTACGTGTTG 1095
| | ||||||||||||||| ||||||||| || | ||||| ||| ||||||||| ||||
Sbjct 955 TATGTGGGTTCTAGAGGACAAGGAGAAAA-TGGAGTGGTC-AAAGTATGCCTACAAGTTG 1012
Query 1096 TGGGATGATATATTTTTGGCTCATTATGTTTCGGTAGTTGGAGTGACTGCTACGGGTGAA 1155
||||||||| ||| |||||| |||| ||||| | |||||||||| |||| |||||||
Sbjct 1013 AGGGATGATAAATTCTTGGCTAATTACGTTTCCATTGTTGGAGTGAGTGCTGCGGGTGAG 1072
Query 1156 ATTGTTTTGTCGATGGCTGATTATACATCTA-AGCAACCCTTCTATATTTTCTACTAT-A 1213
|||||| |||| ||||||||||| || || | | ||||| || ||| | ||||||| | |
Sbjct 1073 ATTGTTCTGTCAATGGCTGATTACACGTCGAGA-CAACCGTTTTATCTATTCTACT-TCA 1130
Query 1214 A-CCCTGAAATGAATACTCTTCAATGTGTTGAAATTCGAGGTTTTGGAGAATACCATGAA 1272
| ||| |||| ||| || || |||||||||||||||| ||| |||| ||||||||||| |
Sbjct 1131 ATCCC-GAAAGGAACACACTCCAATGTGTTGAAATTCAAGGCTTTGAAGAATACCATGGA 1189
Query 1273 GCGT-CGGGCAATAGGAGTAGAGTCTGCGTCTTTGTAGA 1310
| || || ||| || |||||| |||||||||||||
Sbjct 1190 GTGTTCGA-CAAGCTTAGCAGAGTCCGCGTCTTTGTAGA 1227
> Ahg923024 jgi|Araly1|923024|scaffold_104305.1
Length=970
Score = 723 bits (391), Expect = 0.0
Identities = 703/849 (83%), Gaps = 40/849 (5%)
Strand=Plus/Plus
Query 479 TGAAGTTCCCTCCAGATGGTATGCA-GATCTATCCTCGTAACGACCGACGGTTTTCATGT 537
|||||||||||||| | |||| | ||| |||||| |||| |||||||| |||||||||
Sbjct 1 TGAAGTTCCCTCCAAACAATATG-AGGATTTATCCTGGTAATGACCGACGATTTTCATGT 59
Query 538 GGCTATGCGTCTGGTATGATGTATTTCTATGGTATGCGGATCAAAGAGGATG-ATTACGA 596
|||||||| |||||| |||||||||||||||||||| |||||||| | || | |||||||
Sbjct 60 GGCTATGCTTCTGGTTTGATGTATTTCTATGGTATGTGGATCAAACAAGA-GCATTACGA 118
Query 597 TGGAGTGCCTGTGCTATGTAACCCTATAACGGGACATTATGCGACCTTGCCTGCTAT-TG 655
|||||| |||||||||||||||||||||||||||| ||||||| ||| ||| ||| ||
Sbjct 119 TGGAGTTCCTGTGCTATGTAACCCTATAACGGGACGGTATGCGAGCTTACCT--TATCTG 176
Query 656 CA-AGGTTTAGACAAG-CGTTTAGCTTTTTCGGG-TATGATCCGATTGACAAGCAATTCA 712
| |||| ||| | | ||| ||||||||| ||| | |||||| ||||||||||||| ||
Sbjct 177 TATAGGTACAGA-AGGGCGTATAGCTTTTT-GGGATTTGATCCTATTGACAAGCAATACA 234
Query 713 AGGTATTGTTCATGATCATGGCTTACCCATGTAGTCCTGATCATCATAAAGTTCTGAAAC 772
||||||||| | |||||||||||||||| ||||| |||| |||||| || ||| |
Sbjct 235 AGGTATTGT----G--CATGGCTTACCCATGTTGTCCTAATCACCATAAAATTATGACA- 287
Query 773 TT-GGAAGTGGAGAAATGAGTTGGAGAAG-ATTAAAACGTACCTTAAGACATGA-AATTA 829
|| |||| ||||||||||||||||||||| || |||| || ||||||||||||| |||
Sbjct 288 TTAGGAACTGGAGAAATGAGTTGGAGAAGGAT-AAAATGTTCCTTAAGACATGAGAATG- 345
Query 830 TGAGTGAAGGTATATGCATCAATGGGGTTGTGTATTACTTGGGTGATACGTCTGAG-GTT 888
|||||||||| ||||||||| |||||||| |||||||||| ||||| ||||||||| | |
Sbjct 346 TGAGTGAAGGGATATGCATCGATGGGGTTTTGTATTACTTAGGTGACACGTCTGAGAGGT 405
Query 889 TTGACTTCTTTTGTGGTAGTTTGCTTTGATGTGAGGTATGAGACATTCA-GCTTTCTTTA 947
| || | |||||| |||||||||||||||| | || ||||| ||||| | ||| ||||
Sbjct 406 T-GAATAAATTTGTGATAGTTTGCTTTGATGTTATGTCTGAGAAATTCAAG-TTTATTTA 463
Query 948 CCCTGGAA-GCTATTGTGAACTGATAAATTACAAAGGAAAGTTGGGTTTGGTTTTTTATG 1006
|| |||| ||| ||||||| ||||||| ||||| ||||| || ||| || ||| |||||
Sbjct 464 TCC-GGAAAGCTTTTGTGAATTGATAAACTACAAGGGAAAATTAGGTGTGATTTATTATG 522
Query 1007 ATGATTACGATGGTGATACCATTAAGTTGCGTCTT-TGGGTTCTAGAGGACGAGGAGAAA 1065
||||||| |||| ||| | ||| |||||||| || |||||||||||||| | |||||||
Sbjct 523 ATGATTATGATGATGACGCTATTGAGTTGCGT-TTGTGGGTTCTAGAGGATGCGGAGAAA 581
Query 1066 AATGAATGGTCGAAATATGCCTACG-TGTTGTGGGATGATATATTTTTGGCTCATTATGT 1124
| ||||||| | ||||||||||| | ||| ||||||||| ||| || | |||||| ||
Sbjct 582 CAGGAATGGTTGGAATATGCCTACACT-TTGAGGGATGATAAATTCTTAGATCATTACGT 640
Query 1125 TTCGGTAGTTGGAGTGACTGCTACGGGTGAAATTGTTTTGTCGATGGCTGATTATACATC 1184
||| || || |||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 641 TTCCGTCGTGGGAGTGACTGCTTCGGGTGAAATTGTTTTGTCGATGGGAGATTTTACATT 700
Query 1185 TAAGCAACCCTTCTATATTTTCTACTAT-AA-CCCTGAAATGAATACTCTTCAATGTGTT 1242
||| |||||||| ||| ||||||||| | || ||| |||| ||| ||||| ||| |||||
Sbjct 701 TAAACAACCCTTTTATGTTTTCTACT-TCAATCCC-GAAAAGAACACTCTCCAACGTGTT 758
Query 1243 GAAATTCGAGGTTTTGGAGAATACCATGAAGCG-TCGGGCAATAGGAGTAGAGTCTGCGT 1301
||||| | ||||||||||||||||||||||||| || |||| ||||||||| | |
Sbjct 759 GAAATCCAAGGTTTTGGAGAATACCATGAAGCGGTCAA-CAATCCTAGTAGAGTCCACTT 817
Query 1302 CTTTGTAGA 1310
|||||||||
Sbjct 818 CTTTGTAGA 826
> Ahg359033 jgi|Araly1|359033|fgenesh1_pg.C_scaffold_9000073
Length=783
Score = 222 bits (120), Expect = 5e-57
Identities = 245/302 (81%), Gaps = 21/302 (7%)
Strand=Plus/Plus
Query 499 ATGCAGATCTATCCTCGTAACGACCGACGGTTTTCATGTGGCTATGCGTCTGGTATGATG 558
|||| ||||||| ||| || ||||||| ||| ||||||||||||| |||||| || |
Sbjct 1 ATGCGGATCTATTCTCCTATTGACCGACAATTTGCATGTGGCTATGCCTCTGGTTTGGTC 60
Query 559 TATTTCTATGGTATGCGGATCAAA--G-AGGATGA-TTACGATGGAGTGCCTGTGCTATG 614
||||||| ||||||| |||||||| | ||||| | |||| |||||||||||||| ||||
Sbjct 61 TATTTCTTTGGTATGTGGATCAAAGGGAAGGAT-ATTTACCATGGAGTGCCTGTGATATG 119
Query 615 TAACCCTATA-ACGGGACATTATGCGACCTTGCCTGCTAT-TG-CAAGGTTTAGACAAG- 670
|||||||| | || | | | |||| ||| || ||| ||| || ||||| ||| |||
Sbjct 120 TAACCCTA-ACACAGAAAAATATGTGACATTACCT--TATCTGTTAAGGTACAGA-AAGT 175
Query 671 CGTTTAGCTTTTTCGGGTATGATCCGATTGACAAGCAATTCAAGGTATTGTTCATGATCA 730
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 176 CGTTTAGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGTTCATG---- 231
Query 731 TGGCTTACCCATGTAGTCCTGATCATCATAAAGTTCTGAAACTT-GGAAGTGGAGAAATG 789
| |||| ||| || || |||||||||||||| |||||| | || |||| |||| |||||
Sbjct 232 -G-CTTATCCAGGTTGTTCTGATCATCATAAAATTCTGACA-TTAGGAACTGGAAAAATG 288
Query 790 AG 791
||
Sbjct 289 AG 290
> Ahg922179 jgi|Araly1|922179|scaffold_103460.1
Length=2001
Score = 137 bits (74), Expect = 2e-31
Identities = 258/344 (75%), Gaps = 24/344 (7%)
Strand=Plus/Plus
Query 535 TGTGGCTATGCGTCTGGTATGATGTATTTCTATGGTATGCGGATCA-AAGAGGATGATTA 593
||| ||||||| |||||| || ||| ||| || |||| | || | || | | ||| |
Sbjct 117 TGTAGCTATGCTTCTGGTTTGGCCTATCTCTCTGATATGAGAAT-ATCAGTGAAGGATGA 175
Query 594 CGATGGAGTGCCTGTGCTATGTAACCCTATAACGGGACATTATGCGACCTTGCCTGCTAT 653
|||| ||||| |||| ||||||||||||| |||||| | ||| || ||| ||| |
Sbjct 176 GGATGTAGTGCGTGTGATATGTAACCCTATCACGGGAAAGTATACGGTCTTACCT-AAAC 234
Query 654 TG-CAAGGTTTA-G-ACAAG-CGTTTAGCTT-TTTCGGGTATGATCCGATTGACAAGCAA 708
|| |||| || | | ||| ||| ||| || ||| | || |||||| ||||||||||||
Sbjct 235 TGAGAAGG--TACGTA-AAGTCGTATAG-TTATTTAGTGTTTGATCCAATTGACAAGCAA 290
Query 709 TTCAAGGTATTGTTCATGATCATGGCTTACCCATGTAGTCCTGATCATCATAAAGTTCTG 768
|||||||||||||||||| | |||| |||| | |||||||| |||||||| |||||
Sbjct 291 TTCAAGGTATTGTTCATG-----G-CTTATCCATCTGGTCCTGATGATCATAAAATTCTG 344
Query 769 AAACTTGG-AAGTGGAGAAATGAGTTGGAG-AAGATTAAAACGTACCTTAAGACATGAAA 826
| ||||| || | || ||||||| ||||| || || | || |||||| |||||
Sbjct 345 AC-CTTGGGAACTCGAAAAATGAGGTGGAGGAAAATCCATT-GTCCCTTAACTCATGATC 402
Query 827 -TTATGAGTGAAGGTATATGCATCAATGGGGTTGTGTATTACTT 869
|| | ||| ||| |||||||||||||||||| | ||||||||
Sbjct 403 CTTTTT-GTGGAGGGATATGCATCAATGGGGTTTTTTATTACTT 445
> Ahg336227 jgi|Araly1|336227|fgenesh1_pg.C_scaffold_1002792
Length=708
Score = 76.8 bits (41), Expect = 4e-13
Identities = 47/50 (94%), Gaps = 0/50 (0%)
Strand=Plus/Plus
Query 676 AGCTTTTTCGGGTATGATCCGATTGACAAGCAATTCAAGGTATTGTTCAT 725
|||||||| |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 25 AGCTTTTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTGCTCAT 74
> Ahg473482 jgi|Araly1|473482|fgenesh2_kg.1__3436__AT1G33020.1
Length=1521
Score = 67.6 bits (36), Expect = 3e-10
Identities = 42/45 (93%), Gaps = 0/45 (0%)
Strand=Plus/Plus
Query 676 AGCTTTTTCGGGTATGATCCGATTGACAAGCAATTCAAGGTATTG 720
||||| || |||| |||||||||||||||||||||||||||||||
Sbjct 376 AGCTTCTTAGGGTTTGATCCGATTGACAAGCAATTCAAGGTATTG 420
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59458872445
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5