BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47380.1
Length=2046
Score E
Sequences producing significant alignments: (Bits) Value
Ahg473885 jgi|Araly1|473885|fgenesh2_kg.1__3839__AT1G47380.1 3107 0.0
> Ahg473885 jgi|Araly1|473885|fgenesh2_kg.1__3839__AT1G47380.1
Length=1995
Score = 3107 bits (1682), Expect = 0.0
Identities = 1908/2014 (95%), Gaps = 28/2014 (1%)
Strand=Plus/Plus
Query 41 tcctctctttgcgcgttttctct-cttctctctctcCTACGGCTGTTGAAACCAATGGCA 99
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 1 TCCTCTCTTTGCGCGTTTTCTCTAATTCTCTCTCTCCTACGGCTGTTGAAACC-ATGGCA 59
Query 100 TTTCTCCACTTCGCCGGAATTTCGATCGGAAGATGAATCGTCTCCTTCGTCTCTCTTCGC 159
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 TTTCTCCACTTCGCCGGAATTTCGATCGGAAGATGAATCATCTCCTTCGTCTCTCTTCGC 119
Query 160 TTAATCGTCGATCTTCTTCTGTCGCCGTCTAATTGCAAATCCAAATCGTTTTTTGTATGG 219
||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 120 GTAATCTTCCATCTTCTTCAATCGCCGCCTAATTGCAAATCCAAATCGTTTTTTGTATGA 179
Query 220 TAT-AGAGATTTGGTGAAGAACTAGACGCAGCTTAGAGGAAGCTTTTA-TATTTATTGAA 277
| | |||||||||||||||||||||| |||||||||||||||||||| | |||| | ||
Sbjct 180 T-TGGGAGATTTGGTGAAGAACTAGACACAGCTTAGAGGAAGCTTTTAGTTTTTA-T-AA 236
Query 278 GCTTAGGGGGAAACAATGTCAACAAAGGGAGAACATCATACAGTTCCACTTTCTGTGTTG 337
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 237 GCTTAGGGGGAAACAATGTCAACTAAGGGAGAACATCATACAGTTCCACTTTCTGTGTTG 296
Query 338 CTTAAACGTGAATCAGCTAATGAAAAGATAGACAATCCTGAACTTATACACGGCCA-GCA 396
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 297 CTTAAGCGTGAATCAGCTAATGAAAAGATAGACAATCCTGAACTTATACACGGACAGGC- 355
Query 397 CAACCAAAGCAAGAAAGGAGAGGATTTTACTCTTGTTAAAACAGAGTGTCAACGTGTTAT 456
|| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 356 TAATCAGAGCAAGAAAGGAGAGGATTTTACTCTTGTTAAAACTGAGTGTCAACGGGTTAT 415
Query 457 GGGCGATGGTGTTACCACCTTCTCCGTTTTTGGGCTTTTTGATGGACACAATGGTTCTGC 516
||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 416 GGGTGATGGCGTTACTACCTTCTCGGTTTTTGGGCTTTTTGATGGACACAATGGTTCTGC 475
Query 517 AGCAGCTATCTACACTAAAGAGAACCTTTTGAATAATGTATTAGCTGCAATACCTTCTGA 576
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 476 AGCAGCTATCTACACTAAGGAGAACCTTTTGAACAATGTGTTAGCTGCAATACCCTCTGA 535
Query 577 TCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAA 636
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 536 TCTTAACAGAGATGAGTGGGTTGCGGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAA 595
Query 637 AACTGATAAAGATTTCCAGGAAAGAGCAAGGACGTCTGGAACGACTGTAACTTTTGTCAT 696
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 AACTGATAAAGATTTTCAGGAAAGAGCAAGGACGTCTGGAACGACTGTAACTTTTGTCAT 655
Query 697 AGTAGAAGGATGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCC 756
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGTAGAAGGTTGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCC 715
Query 757 TGCTGAGGGCGGTGTCTATTATTTGTCTGCTGATCATCGGCTTGAAATAAACGAAGAAGA 816
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 716 TGCTGAGGGCGGTGTCTATTATTTGTCTGCTGATCATCGGCTTGAAATTAACGAAGAAGA 775
Query 817 GCGAGATCGAGTCACTGCAAGTGGTGGTGAAGTTGGTCGGTTAAATACTGGTGGCGGTAC 876
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 776 GCGAGATCGAGTCACTGCAAGTGGTGGTGAAGTTGGTCGGTTAAATACTGGTGGTGGTAC 835
Query 877 TGAGATTGGTCCTCTGAGATGTTGGCCTGGTGGTCTGTGTCTCTCAAGATCCATTGGAGA 936
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 836 TGAGATTGGTCCTCTGCGATGTTGGCCTGGTGGTCTTTGTCTCTCAAGATCCATTGGAGA 895
Query 937 TCTGGATGTTGGCGAATACATTGTTCCAGTTCCTTATGTAAAGCAAGTCAAGTTGTCTTC 996
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 896 TCTGGATGTTGGCGAATACATTGTCCCAGTTCCTTATGTGAAGCAAGTCAAGTTGTCTTC 955
Query 997 AGCTGGTGGTCGACTGATCATCTCAAGTGATGGTGTGTGGGATGCAATATCTGCAGAAGA 1056
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 956 AGCTGGTGGTCGACTGATCATCTCAAGTGATGGTGTGTGGGATGCAATCTCTGCAGAGGA 1015
Query 1057 GGCTCTTGATTGTTGCCGGGGGTTGCCACCTGAATCTTCTGCGGAGCATATCGTTAAAGA 1116
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1016 GGCTCTTGATTGTTGCCGGGGTTTGCCACCTGAATCTTCCGCGGAGCATATTGTTAAAGA 1075
Query 1117 AGCTGTGGGTAAAAAAGGTATTCGTGATGATACAACCTGTATTGTTGTTGATATATTGCC 1176
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1076 AGCTGTGGGTAAAAAAGGTCTTCGCGATGATACAACCTGTATTGTTGTTGATATATTGCC 1135
Query 1177 ACTAGAAAAACCGGCTGCTTCCGTGCCGCCTCCAAAAAAGCAAGGAAAAGGAATGTTAAA 1236
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1136 ACTAGAAAAACCGGCTGCTTCCGTGCCGCCTCCAAAAAAGCAAGGAAAAGGAATGCTAAA 1195
Query 1237 GTCCATGTTCAAAAGGAAAACATCTGACTCCTCTTCTAATATCGAGAAAGAGTACGCAGA 1296
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1196 GTCCATGTTCAAAAGAAAAACATCTGACTCCTCTTCTAATATCGAGAAAGAGTATGCAGA 1255
Query 1297 ACCTGATGTAGTTGAAGAACTCTTTGAAGAGGGCTCTGCTATGCTATCAGAGAGATTAGA 1356
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1256 ACCTGATGTAGTTGAAGAACTGTTTGAAGAGGGCTCTGCTATGCTTTCAGAGAGATTAGA 1315
Query 1357 CACAAAGTACCCGCTTTGCAATATGTTTAAGTTGTTCATGTGTGCTGTGTGTCAAGTAGA 1416
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 TACAAAGTACCCGCTTTGCAATATGTTTAAGTTGTTCATGTGTGCTGTGTGTCAAGTAGA 1375
Query 1417 AGTGAAACCTGGAGAAGGTGTCTCGATCCATGCCGGGTCGGATAATTGCCGTAAGCTTCG 1476
|||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct 1376 AGTGAAACCTGGAGAAGGAGTGTCGATCCATGCTGGATCGGATAATTGCCGTAAGCTTCG 1435
Query 1477 TCCCTGGGATGGTCCATTCCTTTGTGCAAGTTGCCAAGATAAGAAAGACGCAATGGAAGG 1536
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1436 TCCCTGGGATGGTCCATTCCTTTGCGCAAGTTGCCAAGATAAGAAAGACGCAATGGAAGG 1495
Query 1537 GAAAAGATCATCGGGAGATAGACATAGTAGTGAAAGCGACTAGCCAGCAATCTGCAAATT 1596
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1496 GAAAAGATCATCGGGAGATAGACATAGTAGTGAAAGCGACTAGCCATCAATCTGCAATTT 1555
Query 1597 ATTGGCAAAGCAACTAACAAAACAGTATTGTGAGTAAATTGGAGCAGTTCAAGGATCTTC 1656
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1556 ATTGGCAAAGCAACTAACAAAACAGTATTGTGAGTAAATTGGAGCGGTTCAAAGATCTTC 1615
Query 1657 GGGTTGTAATTTTTCACCCATAGAGAGATATGAAGTTCCTTGATAAACCACCAACATTCT 1716
|||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||
Sbjct 1616 GGGTTGTAATTTTTCACCCAGAGAGAGAT--GAAATTCCTTGATCAACCACCAACATTCT 1673
Query 1717 TACCATTCTCCAGCAGACTCCAAGGAAGTTTATTTATTT-TTCTCCCACTTCAC-G-ACG 1773
||||||||||||||||||||||| | ||||||||| ||| || || | |||| | |
Sbjct 1674 TACCATTCTCCAGCAGACTCCAAAGCAGTTTATTTTTTTCTT-TCTTA-TTCAATGTAA- 1730
Query 1774 TCTTACATCAAACTTGTTTCAAAGTAGAGGTAATTCATAAGTTCttttcatttttccttt 1833
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1731 TCCGACATCAAACTTGTTTCAAAGTAGAGGTAATTCATAAGTTCTTTTCATTTTT--TT- 1787
Query 1834 tcatttttttttGTCCATTTGTGATCACTCTGTGCTTTGGTATTTCAAAAATGAGTAGAA 1893
| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1788 -C-TTTTTTTT-GTCCATTTGTGATCACTCTGTGCTTTGGTATTTAAAAAATGAGTAGAA 1844
Query 1894 CTAACTACCAG-AGACAGTAGCTTTATTACGTCTGTTGAAAT-GTTGAGTCGTTTAGGAA 1951
||||||||||| | |||||||||||||||| ||||||||||| || | |||||||||| |
Sbjct 1845 CTAACTACCAGCA-ACAGTAGCTTTATTACTTCTGTTGAAATTGTGG-GTCGTTTAGGGA 1902
Query 1952 GAGAGGGTAAGGAAGATATGCAAGTATGTGTGCAATTATTTCAATGTATAAACCGAAGAC 2011
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1903 GAGAGGGTAAAGAAGATATGCAAGTCTGTGTGCAATTATTTCAATGTATAAACCGAAGAC 1962
Query 2012 AAATTCTTGATAGAAATCAAATCATTTTTCATGT 2045
||||||||||||||| |||||||||||||||||
Sbjct 1963 AAATTCTTGATAGAAG-CAAATCATTTTTCATGT 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76942294900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5