BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47389.1
Length=723
Score E
Sequences producing significant alignments: (Bits) Value
Ahg941623 jgi|Araly1|941623|scaffold_602167.1 416 1e-115
Ahg333513 jgi|Araly1|333513|fgenesh1_pg.C_scaffold_1000078 276 2e-73
Ahg930374 jgi|Araly1|930374|scaffold_302831.1 187 9e-47
Ahg933049 jgi|Araly1|933049|scaffold_401037.1 99.0 4e-20
> Ahg941623 jgi|Araly1|941623|scaffold_602167.1
Length=1116
Score = 416 bits (225), Expect = 1e-115
Identities = 571/728 (78%), Gaps = 64/728 (9%)
Strand=Plus/Plus
Query 28 ATGATGATGTTTTTGTTAACAAATCCATGGTTGAATTTGTCTCAAGTTTGGGGATTCAC- 86
|||||||||| ||||||||||||| |||||||| ||||| |||| ||| || | |||
Sbjct 400 ATGATGATGTCTTTGTTAACAAATTCATGGTTGGGTTTGTTTCAACTTTTGGTCTCCACG 459
Query 87 ATCGATATCCGATGCCGCCATTTCGATTCTCGTTCTTAGGGTCTTCGT-T-CTTTTTACC 144
| || | |||| || |||| || || ||||| ||||||| ||| | | || || ||
Sbjct 460 A-CGGTGGCCGA---CGTCATTACGTTTTTCGTTGTTAGGGTTTTC-TCTCCTCCTT-CC 513
Query 145 AAAGGCGTTA-TTGTCCGTGTGATGA-TAATATGGTTCATTCACGGTGTTTTTCCGGGTA 202
| ||| | || ||||||||||||||| | || |||||||||||||||||||||| |||||
Sbjct 514 AGAGGAG-TACTTGTCCGTGTGATGACT-ATGTGGTTCATTCACGGTGTTTTTCTGGGTA 571
Query 203 TGCCCGGTC-TTCTCAGTCTGGCAG-CAATAGTTGCCAACATCGTTTTAATGCAAATTTG 260
||| ||| | || || ||||||| | ||||| ||| | ||| || |||| || |||||||
Sbjct 572 TGCTCGG-CGTTTTCGGTCTGGC-GACAATAATTGTCGACAGCGATTTAGTGAAAATTTG 629
Query 261 C-GCCCTTCGACGCATGTGGAACCCCGGAATCACTTCGGAGACATTTGCCGTGAAGATCT 319
| || | || |||| ||| | |||||||| || ||| || |||||| |||||||||||
Sbjct 630 CAATCC-TAGATGCATATGGGATCCCGGAATTACATCGAAGGCATTTGTCGTGAAGATCT 688
Query 320 CTAACAACGTCTTTGGT-TTGAGATGTATGAAT-GGATGGGATTACTTCGGTATCAAGCC 377
| ||| |||||| |||| | || ||||| ||| ||||||| ||| ||||||||||||
Sbjct 689 CCAACGACGTCTATGGTGTGGA-ATGTA-CAATAGGATGGGCCTACACCGGTATCAAGCC 746
Query 378 AAA--TTTT-CTAAT-GGGCACTATGACACCGATACGGACTAATTGGTATC-GAGTTGTC 432
||| |||| || | | ||| ||| |||||||| ||||||||||||||| || ||||
Sbjct 747 AAACTTTTTGCT--TCGTGCA--ATGGCACCGATATGGACTAATTGGTATCGGA-ATGTC 801
Query 433 G-GTTTCTCAAAACT-TTCTCCAGGAGCAACGAGCTTT-GTGTATGTGATGTGGAGTTTC 489
| | || | |||||| | | ||||||||||| | ||| | ||||||||||||||||||
Sbjct 802 GAGATTAT-AAAACTCAT-TACAGGAGCAACG-GGTTTATTCTATGTGATGTGGAGTTTC 858
Query 490 AAACAAAGAATGCCAATATGGCATACA-TATCACATTCGAGTAAGATGGCTAATGAAAGA 548
|||||||||||||||||| ||||| | ||||||| ||||||||||||||| | |||||
Sbjct 859 AAACAAAGAATGCCAATAAGGCAT-CTGTATCACACTCGAGTAAGATGGCTTTT-AAAGA 916
Query 549 -GGAACATAACATGT-TTAACAACATG-TTATCGAGTAAGACTTATCGAAAGGAAGCATC 605
|||||||| ||||| || |||||| || |||||||| ||||| |||| ||||||||
Sbjct 917 AGGAACATATCATGTATTGT-AACATGATTG-CGAGTAAGGCTTATGGAAAAGAAGCATC 974
Query 606 GTTAAATTCACTTTTTC-AGTT-TCGTCATCTTC----T--GGCACATAATTTTGCTTTT 657
||||||||||||| ||| | || | ||||||||| | ||| ||||| ||||||| |
Sbjct 975 GTTAAATTCACTTCTTCGA-TTAT-GTCATCTTCAACATATGGCTCATAAATTTGCTTAT 1032
Query 658 GTAATAAGTTGGTTTCTG-AA-GTTTTGTATTGGCTTTGTACTTGCTATTGTAATACTAA 715
||||||| || ||| || ||||||||||||| ||||| | | | | ||||||| |
Sbjct 1033 GTAATAAACTGCCA-CTGTAAAGTTTTGTATTGGCATTGTA-TGG-T-T-GTAATACCCA 1087
Query 716 TTGTCTAA 723
|||| |||
Sbjct 1088 TTGTTTAA 1095
> Ahg333513 jgi|Araly1|333513|fgenesh1_pg.C_scaffold_1000078
Length=951
Score = 276 bits (149), Expect = 2e-73
Identities = 317/393 (81%), Gaps = 31/393 (8%)
Strand=Plus/Plus
Query 155 TTGTCCGTGTGATGATAATATGGTTCATTCACGGTGTTTTTCCGGGTATGCCCGGTC-TT 213
|||||||||||||||| || ||||||||||||||||||||||||||||||| ||| | ||
Sbjct 449 TTGTCCGTGTGATGATTATGTGGTTCATTCACGGTGTTTTTCCGGGTATGCTCGG-CGTT 507
Query 214 CTCAG-TCTGGCAG-CAATAGTTGCCAACATCGTTTTAATGCAAATTTGC-GCCCTTCGA 270
|| | ||||| || ||||| ||| ||| || |||| || |||||||| || ||||
Sbjct 508 TTC-GATCTGG-AGACAATAATTGTTGACAGCGATTTAGTGAAAATTTGCAATCC-TCGA 564
Query 271 CGCATGTGGAACCCCGGAATCACTTCGGAGACATTTGCCGTGAAGATCTCTAACAACGTC 330
|||| ||| | |||||||| || ||| || ||| || |||||||||||| ||| |||||
Sbjct 565 TGCATATGGGATCCCGGAATTACATCGAAGGCATATGTCGTGAAGATCTCCAACGACGTC 624
Query 331 TTTGGT-TTGAGATGTATGAAT-GGATGGGATTACTTCGGTATCAAGCCAAA--TTTT-C 385
| |||| | || ||||| ||| ||||||| |||| ||||||||||||||| |||| |
Sbjct 625 TATGGTGTGGA-ATGTA-CAATAGGATGGGCTTACACCGGTATCAAGCCAAACTTTTTGC 682
Query 386 TAAT-GGGCACTATGACACCGATACGGACTAATTGGTATC-GAGTTGTCG-GTTTCTCAA 442
| | | ||| ||| |||||||| ||||||||||||||| || ||||| | || | ||
Sbjct 683 T--TCGTGCA--ATGGCACCGATATGGACTAATTGGTATCGGA-ATGTCGAGATTAT-AA 736
Query 443 AACT-TTCTCCAGGAGCAACGAGCTTT-GTGTATGTGATGTGGAGTTTCAAACAAAGAAT 500
|||| | | ||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 737 AACTCAT-TACAGGAGCAACGAG-TTTATTCTATGTGATGTGGAGTTTCAAACAAAGAAT 794
Query 501 GCCAATATGGCATACA-TATCACATTCGA-GTA 531
||||||| ||||| | ||||||| |||| |||
Sbjct 795 GCCAATAAGGCAT-CTGTATCACACTCGAAGTA 826
> Ahg930374 jgi|Araly1|930374|scaffold_302831.1
Length=596
Score = 187 bits (101), Expect = 9e-47
Identities = 194/237 (82%), Gaps = 13/237 (5%)
Strand=Plus/Plus
Query 155 TTGTCCGTGTGATGATAATATGGTTCATTCACGGTGTTTTTCCGGGTATGCCCGGTC-TT 213
|||||||||||||||| || ||||||||||||||||||||||||||||||| ||| | ||
Sbjct 336 TTGTCCGTGTGATGATTATGTGGTTCATTCACGGTGTTTTTCCGGGTATGCTCGG-CGTT 394
Query 214 CTC-AGTCTGGCAG-CAATAGTTGCCAACATCGTTTTAATGCAAATTTGCGC-CCTTCGA 270
|| | ||||| || ||||| ||| | ||| || |||| || |||||||| ||| |||
Sbjct 395 TTCGA-TCTGG-AGACAATAATTGTCGACAACGATTTAGTGAAAATTTGCAATCCT-CGA 451
Query 271 CGCATGTGGAACCCCGGAATCACTTCGGAGACATTTGCCGTGAAGATCTCTAACAACGTC 330
|||| ||| | |||||||| || ||| || |||||| |||||||||||| ||| |||||
Sbjct 452 TGCATATGGGATCCCGGAATTACATCGAAGGCATTTGTCGTGAAGATCTCCAACGACGTC 511
Query 331 TTTGGTTTGAGA-TGTATGAAT-GGATGGGATTACTTCGGTATCAAGCCAAA-TTTT 384
| |||| || || |||| ||| ||||||| |||| ||||||||||||||| ||||
Sbjct 512 TATGGTGTG-GAATGTAC-AATAGGATGGGCTTACACCGGTATCAAGCCAAACTTTT 566
> Ahg933049 jgi|Araly1|933049|scaffold_401037.1
Length=448
Score = 99.0 bits (53), Expect = 4e-20
Identities = 93/111 (84%), Gaps = 8/111 (7%)
Strand=Plus/Plus
Query 155 TTGTCCGTGTGATGA-TAATATGGTTCATTCACGGTGTTTTTCCGGGTATGCCCGGTC-T 212
||||||||||||||| | |||||||||||||||||||||||||||||||||| ||| | |
Sbjct 336 TTGTCCGTGTGATGACT-ATATGGTTCATTCACGGTGTTTTTCCGGGTATGCTCGG-CGT 393
Query 213 TCTCAGTCTGGCAG-CAATAGTTGCCAACA-TCGTTTTAATGCAAATTTGC 261
| || || ||| || ||||| ||| | ||| | | |||| || ||||||||
Sbjct 394 TTTCGGTTTGG-AGACAATAATTGTCGACAGT-GATTTAGTGAAAATTTGC 442
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26609796066
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5