BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47390.1
Length=1113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg923035 jgi|Araly1|923035|scaffold_104316.1 1421 0.0
Ahg949400 jgi|Araly1|949400|scaffold_801287.1 261 8e-69
Ahg319461 jgi|Araly1|319461|fgenesh1_pm.C_scaffold_3002477 224 1e-57
Ahg319463 jgi|Araly1|319463|fgenesh1_pm.C_scaffold_3002479 220 1e-56
Ahg929490 jgi|Araly1|929490|scaffold_301947.1 200 2e-50
> Ahg923035 jgi|Araly1|923035|scaffold_104316.1
Length=1158
Score = 1421 bits (769), Expect = 0.0
Identities = 1022/1137 (90%), Gaps = 45/1137 (4%)
Strand=Plus/Plus
Query 1 ATGGCTCCTGAGGAGAAGCTTCC--GTG---TGAA-CTGATTGAAGAGATACTCTCTCGT 54
|||| |||||||||||||||||| ||| |||| ||||||||||||| || | ||||
Sbjct 21 ATGGTTCCTGAGGAGAAGCTTCCGTGTGACCTGAACCTGATTGAAGAGACGCTTTTTCGT 80
Query 55 GTCCCTCCTGAATCTCTTGTTCGCTTCAGAACCGTTTCTAAGAAATGGAACGCCCTCTTC 114
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 81 GTCCCTCCTGAATCTCTTGTTCGCTTCAGAACCGTTTCTAAGAAATGGAACGCCCTTTTC 140
Query 115 GACGATAAGATGTTCATTAACAACCACAAGATGACATTTCGATTCATCTTAGCAACCGAA 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 141 GACGATAAGATGTTCATTAACAACCACAAGATGACATTTCGATTCATCTTAGCAACC-AA 199
Query 175 -TCTAAGTTCTACTCGGTAAGCATGACTCCAAAGATAGAAGTGCGTGAGTTAAGTTTGGA 233
|| |||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||
Sbjct 200 TTCCAAGTTCTACTCGGTAAGCATCACTCCAAAGATAGAAGTGCGTGAGTTAACTTTAGA 259
Query 234 TATTCCCGGTTTAG-A--ACTTAAACCTAAAATTTTGATTGATTGCAATGGGTTCTTGCT 290
|||||||||||||| | || ||||| |||| ||||||||||||||||||||||||||||
Sbjct 260 TATTCCCGGTTTAGAATCACATAAACTTAAAGTTTTGATTGATTGCAATGGGTTCTTGCT 319
Query 291 ATGTGGCATGGAAAAAGAAGGCATCGTGGTTTGGAACCCGTGGTTAAGACAGGCTAAATG 350
|||||||||||| |||||| || |||||||||||||||||||||||||||||||| |||
Sbjct 320 ATGTGGCATGGATAAAGAA-GC--CGTGGTTTGGAACCCGTGGTTAAGACAGGCTAGATG 376
Query 351 GATAAAGCCAAAGGT-AA--ACCAACCTAGTTTGTGTTTCAATGGCATAGGTTATGAGTA 407
||| |||||| |||| || ||||||||| |||| |||||||||||||||||||||||||
Sbjct 377 GATGAAGCCAGAGGTAAACGACCAACCTATTTTGCGTTTCAATGGCATAGGTTATGAGTA 436
Query 408 TGATAACATGAAACTTGA-GAGTAGTGGTTACAAGACCCTTGTGTCTTATCCTAATGAAT 466
|||||||||||||||||| || || |||||||||||| ||||||||| |||| |||||||
Sbjct 437 TGATAACATGAAACTTGAGGA-TAATGGTTACAAGACACTTGTGTCTCATCCGAATGAAT 495
Query 467 TAGACCCTACTAGATCAGTTTGGAAAATCCATGACTTTGCCTCCAATTCATGGAAATATA 526
||| |||| | ||||||||||||||||||||| |||||||||||||| |||||| |||
Sbjct 496 TAG---CTACAAAATCAGTTTGGAAAATCCATGATTTTGCCTCCAATTCGTGGAAAGATA 552
Query 527 CAA-ATTTGGTCATGAGTTGTAGTAGTGGTGTTACTTTATTCGGTGCAAGTGTATCACTG 585
|| | ||||| || ||| |||||| |||| |||||||| ||| |||||||| | |
Sbjct 553 -AAGAGTTGGTTATTAGTGGTAGTAATGGTATTACTTTACTCGCCACAAGTGTAACGTTA 611
Query 586 AATGGAATTTTGTATTGGGTTGCCTCTCATCTAAAGAATAATTCCTTGTTCGTCCTGGTT 645
||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||| |||
Sbjct 612 AATGGAATTTTGTATTGGGTTGCCTCTTATCTACAGAATAATTCCTCGTTCGTCCTAGTT 671
Query 646 TACTACAATTTTTCCAATGAAAAGGTCTACAAGTTTTCTGATCTACCATGTGGGGAGAAC 705
|||| ||| |||||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct 672 TACTTCAACTTTTCCAATGAAAAAGTCCACAAGTTTTCTGATCTACCATGTGGAGAGAAC 731
Query 706 CATCATCA-CGATGTTCTTGTTCTTAGGATTTTTAGGGAAGATCGGCTTTCGTTGTTAAA 764
|||||| | ||||||| ||||||||||| |||||| |||||||||||| |||||||||||
Sbjct 732 CATCAT-AGCGATGTTATTGTTCTTAGGCTTTTTATGGAAGATCGGCTATCGTTGTTAAA 790
Query 765 GCAATGCCATCTAACAAAGAAGATTGAGATTTGGGTGACCAAGAACAAGATTAGAAACTG 824
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 791 GCAATGCCATCTAACAAAGAAGATTGAGATTTGGGTGACCAAGAACAAGATTAAAAACTG 850
Query 825 CTC-TAGTGGAGATGTGGATTCAGCGGAATGGATGAATTTCATGGAAGTGTCAACTCTTA 883
| | ||||||||||||||| | |||||||||||||||||||||||||||| ||
Sbjct 851 C-CGTAGTGGAGATGTGGA---A------TGGATGAATTTCATGGAAGTGTCAACTCCTA 900
Query 884 ACTTGCCGGTTTTAGTACACCCAAGTTACTTCATCGACGATAAAAAGCTCGTTGTGTGTT 943
||||||||| ||||||| | |||||||||||||||||| |||||||||||||||||||||
Sbjct 901 ACTTGCCGGGTTTAGTAAAGCCAAGTTACTTCATCGACCATAAAAAGCTCGTTGTGTGTT 960
Query 944 CTTGCGACCAAACTGGCCAAGCTTGGATCTATGTTGTGGGGGACAATAAGTTGATCAGTA 1003
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 961 CTTGCGACGAAACTGGCCAAGCTTGGATCTATGTTATGGGGGACAATAAGTTGATCAGTA 1020
Query 1004 AAATTCAAATAGATTCTGTGGTTGGTCCCTGGCCTTTGCATTGTAGCT-TTTTCCCCAGT 1062
|||||||||||||||||||||||| || ||||||||||||||||| || ||||||| |||
Sbjct 1021 AAATTCAAATAGATTCTGTGGTTGATCTCTGGCCTTTGCATTGTACCTGTTTTCCC-AGT 1079
Query 1063 TTGGTCTCAATACCTCGAAGTC-AA---A--CTAAAAAAGCAGCATTACAAGTTTGA 1113
|||||| | |||||||||||| || | ||||| ||||||||||||||||||||
Sbjct 1080 TTGGTCCCGGTACCTCGAAGTCGAAGTCAAACTAAAGAAGCAGCATTACAAGTTTGA 1136
> Ahg949400 jgi|Araly1|949400|scaffold_801287.1
Length=1147
Score = 261 bits (141), Expect = 8e-69
Identities = 354/451 (78%), Gaps = 37/451 (8%)
Strand=Plus/Plus
Query 686 ATCTACCATGTG-G-GGA-GAAC-CATCATCACGATGTTCTTGTTCTTAGGATTTTT-AG 740
|||||||||||| | || |||| | | | | |||| |||||| || || ||||| ||
Sbjct 691 ATCTACCATGTGAGAAGACGAACTC-CCTTAAGGATGCTCTTGTCCTCGGGGTTTTTAAG 749
Query 741 GGAAGATCGGCTTTCGTTGTTAAAGCAATGCCATCTAACAAAGAAGATTGAGATTTGGGT 800
|| |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 750 GG-AGATCGGCTTTCATTGTTAAAGCAATGCCATAAAACAAAGAAGATTGAGATTTGGGT 808
Query 801 GACCAAGA-ACAAGATTAGAAACTGCTCTAG-TGGAGATGTGGATTCAGCGGAATGGATG 858
|||||| | ||||| ||| | || ||| | | | || | || | |||||||||
Sbjct 809 GACCAA-ATACAAGGTTA-ATACAAATCTTGCTCGTGAAG---AT---GTGGAATGGATA 860
Query 859 AA-TTTCATGGAAGTGTCAACTCTTAACTTGCCG-GT-T--T-TAGTACAC-C--C-AAG 908
|| ||| ||||||||||||| || |||||||||| || | | || ||| | | | |||
Sbjct 861 AACTTT-ATGGAAGTGTCAAGTCCTAACTTGCCGAGTCTAGTATACTACTCTCAGCCAAG 919
Query 909 TTACTTCATCGACGATAAAAAGCTCGTTGTGTGTTCTTGCGACCAAACTGGCCAAGCTTG 968
||||||||| || ||||||| ||| || || || ||||| ||| ||| ||| | |||||
Sbjct 920 TTACTTCATTGAAGATAAAAGGCTTGTCGTTTGCTCTTGGGACAAAATTGGTCGGGCTTG 979
Query 969 GATCTATGTTGTGGGGGACAATAAGTTGATCAGTAAAATTCAAATAGATTCTGTGGTTGG 1028
||| |||||| | ||||| ||||||||||||||||||| ||| ||||||| ||| ||||
Sbjct 980 GATATATGTTTTAGGGGAAAATAAGTTGATCAGTAAAAGTCATATAGATTATGTAGTTGA 1039
Query 1029 TCCCTGGCCTTTGCATTGTAGCTTT-TTCCCCAGTTTGGT-CTCAATACCTCGAAGTCAA 1086
||| |||||||| || |||| |||| |||| |||||||| | | | ||||||||||||
Sbjct 1040 TCCTTGGCCTTTTCACTGTACCTTTATTCCT-AGTTTGGTAC-CGGTTCCTCGAAGTCAA 1097
Query 1087 AC-TAAA-AA--AGCAGCATTACAAGTTTGA 1113
| | || || ||||| |||||||||||||
Sbjct 1098 -CGTGAAGAACTAGCAGAATTACAAGTTTGA 1127
> Ahg319461 jgi|Araly1|319461|fgenesh1_pm.C_scaffold_3002477
Length=1050
Score = 224 bits (121), Expect = 1e-57
Identities = 255/316 (81%), Gaps = 24/316 (8%)
Strand=Plus/Plus
Query 32 TGATTGAAGAGATACTCTCTCGTGTCCCTCCTGAATCTCTTGTTCGCTTCAGAACCGTTT 91
|||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||| |
Sbjct 32 TGATTGAAGAGATACTCTCTCGTGTCCCACCTAAATGTCTTGTTCGCTTCAGAACCGTAT 91
Query 92 CTAAGA-AATGGAACGCCCTCTTCGACGATAAGATGTTCATTAACAACCACAAGATGACA 150
| || | |||||||| | || |||||||| |||| |||||| |||||||||||||||||
Sbjct 92 CGAA-ACAATGGAACACTCTTTTCGACGACAAGACGTTCATCAACAACCACAAGATGACG 150
Query 151 TTTCGATTCATCTTAGCAACCGAAT-CTAAG-TTCTACTCGGTAAGCAT-GACTCCAA-A 206
|||||||||||| |||||||| ||| | | | || || ||||||||||| || ||| |
Sbjct 151 TTTCGATTCATCCTAGCAACCAAATAC-AGGATT-TATTCGGTAAGCATCGA-TCCCGTA 207
Query 207 GATAGAAGTG---CGTGAGTTAAGTTT-GGATATTCCCGGTTTAGAACTT--AAACCTAA 260
|| | ||| ||||| ||| || || || |||||| |||| ||| |||| |||
Sbjct 208 -ATTGTTGTGGTACGTGACATAACCTTAGG-TACTCCCGGGTTAG--CTTTCAAACTTAA 263
Query 261 AATTTTGATTGATTGCAATGGGTTCTTGCTATGTGGCATGGAAAAA-GAAGGCATCGTGG 319
|| ||| |||||||||||||||| ||||||||||||| | || || | || | ||| |
Sbjct 264 AAACTTGGTTGATTGCAATGGGTTGTTGCTATGTGGCAAG-AATAATGGAG-C--CGTTG 319
Query 320 TTTGGAACCCGTGGTT 335
|||||||||| |||||
Sbjct 320 TTTGGAACCCTTGGTT 335
> Ahg319463 jgi|Araly1|319463|fgenesh1_pm.C_scaffold_3002479
Length=969
Score = 220 bits (119), Expect = 1e-56
Identities = 327/420 (78%), Gaps = 43/420 (10%)
Strand=Plus/Plus
Query 676 AAG-TTTTCTGATCTACCATGTGGGGAG-AACCATCAT--CA-CGATGTTCTTGTTCTTA 730
||| |||| |||||||||||| ||||| |||||| || | ||||| |||||| |||
Sbjct 513 AAGATTTTGTGATCTACCATG-CGGGAGAAACCATAATAGTAGCGATGCTCTTGTCCTTG 571
Query 731 GGATTTTTAGGGAAGATCGGCTTTCGTTGTTAAAGCAATGCCAT-CTAACAAAGAAGATT 789
|| | ||||||| ||||||| |||||||| |||||||||| ||| ||||||||||||||
Sbjct 572 GGGTCTTTAGGGGAGATCGGTTTTCGTTGCTAAAGCAATG-CATGGTAACAAAGAAGATT 630
Query 790 GAGATTTGGGTGACCAAGAACAAGATTAGAA-ACTGCTCTAGTGGAGATGTGGATTCAGC 848
|||||||||||||| ||||||||||| | | || | ||| |||| || |
Sbjct 631 GAGATTTGGGTGACTGTGAACAAGATTA-ACCA-TGAGG-A-TGGTGATG---AT---GT 680
Query 849 GGAATGGATGAATTTCATGGAAGTGT-CAACTCTTAACTTGCCGG-TTT--TAG------ 898
|| ||||||||||||||| | | | ||| || ||||||||||| ||| |||
Sbjct 681 GGTTTGGATGAATTTCATG-ACCTTTTCAAGTCCTAACTTGCCGGATTTAGTAGACACCG 739
Query 899 TA-C--AC-C----C-AAGTTACTTCATCGACGATAAAAAGCTCGTTGTGTGTTCTTGCG 949
|| | || | | ||||||||||||||| ||||| | |||||| ||||| ||||| |
Sbjct 740 TAACCTACACTGATCCAAGTTACTTCATCGAAGATAAGAGGCTCGTGGTGTGCTCTTGGG 799
Query 950 ACCAA-ACTGGCCAAGCTTGGATCTATGT-TGTGGGGGACAATAAGTTGATCAGTAAAAT 1007
|| || ||||| | |||||||||||| | | ||||||| |||||||||||||||||||
Sbjct 800 AC-AACACTGGTTACGCTTGGATCTATATAT-TGGGGGATAATAAGTTGATCAGTAAAAC 857
Query 1008 TCAAATAGATTCTGTGGTTGGTCCCTGGCCTTTGCATTGTAGCTTTTTCCCCAGTTTGGT 1067
|| ||||||| ||| |||| ||| ||||||||||| |||| |||| |||||||||||||
Sbjct 858 TCGTATAGATTGTGTTGTTGATCCTTGGCCTTTGCACTGTACCTTTGTCCCCAGTTTGGT 917
> Ahg929490 jgi|Araly1|929490|scaffold_301947.1
Length=1207
Score = 200 bits (108), Expect = 2e-50
Identities = 292/374 (78%), Gaps = 39/374 (10%)
Strand=Plus/Plus
Query 734 TTTTTAGGGAAGATCGGCTTTCGTTGTTAAAGCAATGCCATCTAACAAAGAAGATTGAGA 793
||||||||| ||| ||| ||||| ||||| | |||||| || |||||||||||||||||
Sbjct 802 TTTTTAGGGGAGACCGGTTTTCGGTGTTAGATCAATGCAATGAAACAAAGAAGATTGAGA 861
Query 794 TTTGGGTGACCAAGAACAAGATTAGAAACTGCTCTAGTGGAGATGTGGATTCAGCGGAAT 853
|||||||||||||||||||||||| || | | ||| || | || | |||||
Sbjct 862 TTTGGGTGACCAAGAACAAGATTA----CT-CGGGA-TGG-GAAA-G-AT---GTGGAAT 909
Query 854 GGATGAA-TTTCATGGAAGTGTCAACTCTTAACTTGCCGG-TTT--TA--GT----AC-- 901
||||||| ||| |||||| ||||| || ||||||||| | ||| || || ||
Sbjct 910 GGATGAAGTTT-ATGGAAATGTCATGTCCTAACTTGCCTGATTTAGTACAGTCCCGACCC 968
Query 902 -AC-C-C----AAGTTACTTCATCGACGATAAAAAGCTCGTTGTGTGTTCTTGCGACCAA 954
|| | | ||||||||||||||| ||||||| |||| | ||||||||||| ||| ||
Sbjct 969 TACTCTCGGCCAAGTTACTTCATCGAAGATAAAACGCTCATCGTGTGTTCTTGTGAC-AA 1027
Query 955 A-CTGGCCAAGCTTGGATCTATGTTGTGGGGGACAATAAGTTGATCAGTAAAATTCAAAT 1013
| |||| || ||||||||||||||||| |||| |||||| ||| ||| ||||| |||
Sbjct 1028 AGCTGGACAGGCTTGGATCTATGTTGTAAGGGAAAATAAGCTGA---GTACAATTCGAAT 1084
Query 1014 AGATTCTGTGGTTGGTCCCTGGCCTTTGCATTGTAGCT-TTTTCCCCAGTTTGGTCTCAA 1072
||||| |||||||| ||| ||||||| |||||||| || ||||||| ||||||||| |
Sbjct 1085 AGATTATGTGGTTGATCCTTGGCCTTCGCATTGTACCTGTTTTCCC-AGTTTGGTCCCGG 1143
Query 1073 TACCTCGAAGTCAA 1086
| |||||| |||||
Sbjct 1144 TTCCTCGAGGTCAA 1157
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41477733696
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5