BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G47395.1

Length=375
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923037 jgi|Araly1|923037|scaffold_104318.1                        276    9e-74
  Ahg923038 jgi|Araly1|923038|scaffold_104319.1                        259    9e-69
  Ahg923039 jgi|Araly1|923039|scaffold_104320.1                        239    1e-62


> Ahg923037 jgi|Araly1|923037|scaffold_104318.1
Length=193

 Score =  276 bits (149),  Expect = 9e-74
 Identities = 176/189 (93%), Gaps = 1/189 (1%)
 Strand=Plus/Plus

Query  63   TCTTCATAACAGaaaaaaaaaaTGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTT  122
            ||||||||||  || |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  1    TCTTCATAAC-CAACAAAAAAATGATGTCTTTCGTTGCTAACTTGGTCATCAAAAGTTTT  59

Query  123  GACCGTGCTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTT  182
             |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  60   TACCGTGCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTT  119

Query  183  GAGAATGGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTCT  242
            |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||
Sbjct  120  GAGAATGGTGGTGACGACGATGACAGTGGCTATGATTACGCTCCTGCTGCATGATTCTCT  179

Query  243  CCTATTAGT  251
            | | |||||
Sbjct  180  CATCTTAGT  188


> Ahg923038 jgi|Araly1|923038|scaffold_104319.1
Length=193

 Score =  259 bits (140),  Expect = 9e-69
 Identities = 161/171 (94%), Gaps = 1/171 (1%)
 Strand=Plus/Plus

Query  70   AACAGaaaaaaaaaaTGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTTGACCGTG  129
            |||| || ||||||||||||| || | ||||||||||||||| |||||||||||||||||
Sbjct  8    AACA-AACAAAAAAATGATGTATTTCTTTGCTAACTTGGTCAGCAAGAGTTTTGACCGTG  66

Query  130  CTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAATG  189
            |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  67   CTTCTGCGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAATG  126

Query  190  GTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGT  240
            ||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct  127  GTGGTGACGACGATGACAGTGGCTACGATTATGCTCCTGCTGCGTGATTGT  177


> Ahg923039 jgi|Araly1|923039|scaffold_104320.1
Length=193

 Score =  239 bits (129),  Expect = 1e-62
 Identities = 166/184 (90%), Gaps = 2/184 (1%)
 Strand=Plus/Plus

Query  70   AACAGaaaaaaa-aaaTGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTTGACCGT  128
            |||| |||||||  |||||||||||  || || ||||||| |||||||||||| ||||||
Sbjct  7    AACA-AAAAAAATCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAGTTTGGACCGT  65

Query  129  GCTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAAT  188
            ||||||| ||||||||||||||||||||||||||| ||||||| | ||| || |||||||
Sbjct  66   GCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGTTCTCGAGTGGCATATGGTGAGAAT  125

Query  189  GGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTCTCCTATT  248
            ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |||
Sbjct  126  GGTGGTGATGACGATGACACTGGCTACGATTATGCTCCTGCTGCGTGATTGTCTCCAATT  185

Query  249  AGTA  252
            ||||
Sbjct  186  AGTA  189



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13392611739


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5