BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G47395.1 Length=375 Score E Sequences producing significant alignments: (Bits) Value Ahg923037 jgi|Araly1|923037|scaffold_104318.1 276 9e-74 Ahg923038 jgi|Araly1|923038|scaffold_104319.1 259 9e-69 Ahg923039 jgi|Araly1|923039|scaffold_104320.1 239 1e-62 > Ahg923037 jgi|Araly1|923037|scaffold_104318.1 Length=193 Score = 276 bits (149), Expect = 9e-74 Identities = 176/189 (93%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 63 TCTTCATAACAGaaaaaaaaaaTGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTT 122 |||||||||| || |||||||||||||||| ||||||||||||||||||||| |||||| Sbjct 1 TCTTCATAAC-CAACAAAAAAATGATGTCTTTCGTTGCTAACTTGGTCATCAAAAGTTTT 59 Query 123 GACCGTGCTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTT 182 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 60 TACCGTGCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTT 119 Query 183 GAGAATGGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTCT 242 |||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||| Sbjct 120 GAGAATGGTGGTGACGACGATGACAGTGGCTATGATTACGCTCCTGCTGCATGATTCTCT 179 Query 243 CCTATTAGT 251 | | ||||| Sbjct 180 CATCTTAGT 188 > Ahg923038 jgi|Araly1|923038|scaffold_104319.1 Length=193 Score = 259 bits (140), Expect = 9e-69 Identities = 161/171 (94%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 70 AACAGaaaaaaaaaaTGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTTGACCGTG 129 |||| || ||||||||||||| || | ||||||||||||||| ||||||||||||||||| Sbjct 8 AACA-AACAAAAAAATGATGTATTTCTTTGCTAACTTGGTCAGCAAGAGTTTTGACCGTG 66 Query 130 CTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAATG 189 |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 CTTCTGCGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAATG 126 Query 190 GTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGT 240 ||||||| ||||||||||||||||| ||||||||||||||||||||||||| Sbjct 127 GTGGTGACGACGATGACAGTGGCTACGATTATGCTCCTGCTGCGTGATTGT 177 > Ahg923039 jgi|Araly1|923039|scaffold_104320.1 Length=193 Score = 239 bits (129), Expect = 1e-62 Identities = 166/184 (90%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 70 AACAGaaaaaaa-aaaTGATGTCTTACGTTGCTAACTTGGTCATCAAGAGTTTTGACCGT 128 |||| ||||||| ||||||||||| || || ||||||| |||||||||||| |||||| Sbjct 7 AACA-AAAAAAATCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAGTTTGGACCGT 65 Query 129 GCTTCCGTGGTGTATGTTGAAGATGTGGTGGATAGCTCTCGAGCGACATGTGTTGAGAAT 188 ||||||| ||||||||||||||||||||||||||| ||||||| | ||| || ||||||| Sbjct 66 GCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGTTCTCGAGTGGCATATGGTGAGAAT 125 Query 189 GGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTCTCCTATT 248 ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||| Sbjct 126 GGTGGTGATGACGATGACACTGGCTACGATTATGCTCCTGCTGCGTGATTGTCTCCAATT 185 Query 249 AGTA 252 |||| Sbjct 186 AGTA 189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 13392611739 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5