BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G47400.1

Length=470
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg923039 jgi|Araly1|923039|scaffold_104320.1                        278    3e-74


> Ahg923039 jgi|Araly1|923039|scaffold_104320.1
Length=193

 Score =  278 bits (150),  Expect = 3e-74
 Identities = 177/190 (93%), Gaps = 2/190 (1%)
 Strand=Plus/Plus

Query  82   ATATCCAACAAAAAATATCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAGATTTG  141
            ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1    ATAACCAACAAAAAAAATCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAG-TTTG  59

Query  142  -ACCATGCTTCCACCGTGTATGTTGAAGATGTGGTAGATAGTTCTCGAGTGGCATATAGT  200
             ||| ||||||| | |||||||||||||||||||| ||||||||||||||||||||| ||
Sbjct  60   GACCGTGCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGTTCTCGAGTGGCATATGGT  119

Query  201  GAGAATGGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTTT  260
            ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct  120  GAGAATGGTGGTGATGACGATGACACTGGCTACGATTATGCTCCTGCTGCGTGATTGTCT  179

Query  261  CCTATTAGTA  270
            || |||||||
Sbjct  180  CCAATTAGTA  189



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17017392694


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5