BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G47400.1 Length=470 Score E Sequences producing significant alignments: (Bits) Value Ahg923039 jgi|Araly1|923039|scaffold_104320.1 278 3e-74 > Ahg923039 jgi|Araly1|923039|scaffold_104320.1 Length=193 Score = 278 bits (150), Expect = 3e-74 Identities = 177/190 (93%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 82 ATATCCAACAAAAAATATCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAGATTTG 141 ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1 ATAACCAACAAAAAAAATCAATGATGTCTTTTGTCGCAAACTTGGCCATCAAGAG-TTTG 59 Query 142 -ACCATGCTTCCACCGTGTATGTTGAAGATGTGGTAGATAGTTCTCGAGTGGCATATAGT 200 ||| ||||||| | |||||||||||||||||||| ||||||||||||||||||||| || Sbjct 60 GACCGTGCTTCCGCGGTGTATGTTGAAGATGTGGTGGATAGTTCTCGAGTGGCATATGGT 119 Query 201 GAGAATGGTGGTGATGACGATGACAGTGGCTATGATTATGCTCCTGCTGCGTGATTGTTT 260 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| | Sbjct 120 GAGAATGGTGGTGATGACGATGACACTGGCTACGATTATGCTCCTGCTGCGTGATTGTCT 179 Query 261 CCTATTAGTA 270 || ||||||| Sbjct 180 CCAATTAGTA 189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 17017392694 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5