BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G47410.1
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
Ahg913750 jgi|Araly1|913750|Al_scaffold_0001_4004 773 0.0
Ahg473889 jgi|Araly1|473889|fgenesh2_kg.1__3843__AT1G47420.1 219 3e-56
> Ahg913750 jgi|Araly1|913750|Al_scaffold_0001_4004
Length=585
Score = 773 bits (418), Expect = 0.0
Identities = 532/585 (91%), Gaps = 15/585 (3%)
Strand=Plus/Plus
Query 54 ATGGTATTTTGCGGTGACGACGTTGCCACAGGGGTGAGAGATGCTATCACTTATTGTTAC 113
|||||||| ||||| || ||||| ||||||||||||| ||||||| ||| ||||||||||
Sbjct 1 ATGGTATTCTGCGGCGATGACGTGGCCACAGGGGTGAAAGATGCTTTCATTTATTGTTAC 60
Query 114 AGATGCAAAGGCAGAAAAGTTACACTTTCTGATCACGAAGCCGATGATGATAACAAGCCT 173
|||||||||||||||||||||||| |||| |||||||||| | | ||||| |||||||||
Sbjct 61 AGATGCAAAGGCAGAAAAGTTACAGTTTCCGATCACGAAGACAACGATGACAACAAGCCT 120
Query 174 ATCGGGGATTTTGACTACGACCATGAAGTTGTTGTTTTCGAGATCAGAAGTCGGGCGATG 233
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 ATCGGGGATTTTGACTACGACCATGAAGTTGTTGTTTTCGAGATCAGAAGTCGGGCAATG 180
Query 234 GAAAAACTAAGGAAGAAGCGAAGGACAGGAATGGAGGGGCTAACTTACAAATTCGTAAAA 293
|| || |||||||||||| ||| ||||||||| || |||||||||| ||||||| | |||
Sbjct 181 GAGAAGCTAAGGAAGAAGAGAAAGACAGGAATAGATGGGCTAACTTGCAAATTCATGAAA 240
Query 294 GAATATGACATC------G-A-A----AACGAATTCTGTTCGGTAAGAAGCAGTTTTTCG 341
|||||||||||| | | | |||||||||||||||||||||||||||||||||
Sbjct 241 GAATATGACATCGAAAAGGAAGAGGGTAACGAATTCTGTTCGGTAAGAAGCAGTTTTTCG 300
Query 342 GAATGTTGCATGAGTGATATCAGCATAGAAGGATACATGACAGCGAAAACTGAGTTCTCA 401
|||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||
Sbjct 301 GAATGTTGCATGAGTGATATGAGCATAGAAGGATACATGACGGCGAAAACGGAGTTCTCG 360
Query 402 AGGAGTTCAAGCTTGAAAGGTTTAGAGCTGGAGAATCAATGGAAGATGCATTACGTTAAT 461
|||||||| |||||||| ||||||||||||||||||||||||||||| ||||||| |||
Sbjct 361 AGGAGTTCGAGCTTGAATGGTTTAGAGCTGGAGAATCAATGGAAGATATATTACGTGAAT 420
Query 462 GAAATTAAGAAAGGATCAGTGATTCAAGAGTTCTGTCATTGCCAAGGATGGCCATTTGGA 521
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAATCAGGAAAGGATCAGTGATTCAAGAGTTCTGTCATTGCCAAGGATGGCCATTTGGT 480
Query 522 TTGGGACGAAAAGCTGCGTTGCTTCCACCGCTTCCAAAGTCACCTGCAGAGTCATGGTCT 581
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGGGGCGAAAAGCTGCGTTGCTTCCACCGCTTCCAAAGTCACCTGCAGAGTCATGGTCT 540
Query 582 TGGAGGAAGCCTAC-A-A-GAGTTACTCCAGTTCCTTTTGTTTGA 623
|||||||||||||| | | ||||||||||| |||| |||||||||
Sbjct 541 TGGAGGAAGCCTACTACAAGAGTTACTCCAATTCCATTTGTTTGA 585
> Ahg473889 jgi|Araly1|473889|fgenesh2_kg.1__3843__AT1G47420.1
Length=1050
Score = 219 bits (118), Expect = 3e-56
Identities = 146/159 (92%), Gaps = 3/159 (2%)
Strand=Plus/Minus
Query 633 AGCTCAAAATATTGAATCATTATAAACAAAAGATCTCTCATAAAAGGAAACAGTAACAAA 692
|||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1050 AGCTCAAAATGTTGAATCATTAGAAACAAAAGATCTCTCATGTAAGGAAACAGTAACAAA 991
Query 693 TGAACACAAATTC-A--TGTGAGTTTATTTTTCAATTGGTGTTAAGCTCTAAATTTTAAA 749
|||||||||||| | |||||||||||||||||| |||||||||||||||||||| |||
Sbjct 990 TGAACACAAATTGGAGCTGTGAGTTTATTTTTCAACTGGTGTTAAGCTCTAAATTTGAAA 931
Query 750 GCTTCATTTGGAGGAAACAATGAACAGACTCACCTGATA 788
||||| |||||||||||||||||||| |||||||| |||
Sbjct 930 GCTTCGTTTGGAGGAAACAATGAACAAACTCACCTTATA 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29087785671
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5